CF509864

Overview
NameCF509864
Unique NameCF509864
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length481
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5824 contig Csv1_Contig5824:475..955. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF509864 vs. ExPASy Swiss-Prot
Match: RING3_ARATH (E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.170e-22
Identity = 46/99 (46.46%), Postives = 66/99 (66.67%), Query Frame = 3 
Query:   72 NSQETSSKCDDLKEPESKTVANVELESTKELEVELSKSVHHVVAVIEEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFD 368
            N++ T S  D  +E  SK+   +    +K +  +      ++  + E+EDVCPTCLEEY +ENP+I+TKC HHFHL+CI+EWMERS+ CPVC + M F+
Sbjct:  134 NNKSTLSDKDSKEEYSSKSSLRILRSRSKSIMADSE----NMYILSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFN 228
The following BLAST results are available for this feature:
BLAST of CF509864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RING3_ARATH6.170e-2246.46E3 ubiquitin-protein ligase At3g02290 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-372 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509864 ID=CF509864; Name=CF509864; organism=Citrus sinensis; type=EST; length=481bp
AATTTGCAGCAATAAGAGTGATCCTTCAGTGCAAACAACTCCTGTTCCTG
TGCAAGATACACCTTGGTGGCAATTCTCAAGAAACTTCATCTAAGTGTGA
TGACCTAAAGGAACCAGAATCTAAAACAGTAGCCAATGTTGAACTTGAAT
CAACTAAGGAGCTAGAAGTTGAGCTCTCAAAGTCTGTTCATCATGTTGTT
GCAGTGATAGAGGAGGAGGATGTTTGCCCAACATGTCTGGAAGAGTATGA
TGCAGAGAATCCGAGAATTATCACAAAATGTGAGCATCATTTTCATCTTG
CGTGCATTTTTGAATGGATGGAAAGAAGTGACACCTGTCCAGTTTGCAAT
CAGGAAATGATATTTGACCTTCCTGTGGATTATTAGCTGTCCAGTGATTT
CTGCAGAGTTCAGCTTCTTAGTTATTTGACGTTGGGTTTTGGAGTTCAAG
TTTATAAATGCTTTGGAAGTTGTTCCTCTTT
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