CF509874

Overview
NameCF509874
Unique NameCF509874
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF509874_ssr1 microsatellite CF509874_ssr1:1..12. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig131 contig Csv1_Contig131:645..1322. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509874 vs. ExPASy Swiss-Prot
Match: CO058_XENTR (UPF0580 protein C15orf58 homolog OS=Xenopus tropicalis PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.177e-27
Identity = 33/76 (43.42%), Postives = 51/76 (67.11%), Query Frame = 1
Query:  451 SAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLH 678
            S  ++ ++S ++V INVSP+E+GHVL +P    CLPQ +  +  L  +     + +P FR+G+NSLG FA++NHLH
Sbjct:  161 SCTLECKSSCTLVVINVSPLEFGHVLFMPDPSLCLPQILTENLMLFGMESVFLSSHPGFRVGFNSLGGFASVNHLH 236          

HSP 2 Score: 68.9366 bits (167), Expect = 5.177e-27
Identity = 38/123 (30.89%), Postives = 64/123 (52.03%), Query Frame = 3
Query:   75 LPLYAFKRVNKFKTEMGVHG------HEVREPEPPVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASE 425
            LP    +  N F+ +    G       E  E    ++  D  +  +WE+++  GLFRY +   +T+++PG   ++AQLN  R + +R  E  +  V Q F+ N+FN+ K+  EE++FQ   SE
Sbjct:    8 LPNATVEEYNYFEEDFVFQGLSWKKRQEFAEDTSFLSPFDKALQSKWEEKMNEGLFRYPLRNVQTKILPGSVSYVAQLNIQRSINRRKPE-DIWSVQQKFNPNQFNYNKIKSEEIVFQMIRSE 129          
BLAST of CF509874 vs. ExPASy Swiss-Prot
Match: CO058_XENLA (UPF0580 protein C15orf58 homolog OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.772e-27
Identity = 33/73 (45.21%), Postives = 48/73 (65.75%), Query Frame = 1
Query:  460 IDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLH 678
            ++ +   ++V INVSP+E+GHVL +P    CLPQ +  D  L  L     + +P FR+G+NSLG FA++NHLH
Sbjct:  165 LECKGGCTLVVINVSPLEFGHVLFMPDPSLCLPQILTEDLMLFGLESVLLSAHPGFRVGFNSLGGFASVNHLH 237          

HSP 2 Score: 68.1662 bits (165), Expect = 8.772e-27
Identity = 35/104 (33.65%), Postives = 59/104 (56.73%), Query Frame = 3
Query:  123 GVHGHEVREPEPPVAFL---DSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASE 425
            G+   E R+     +FL   D  +  +WE ++  GLFRY +   +T+++PG   ++AQLN  R + +R  E  +  + Q F+ N+FN+ K+  EE++FQ   SE
Sbjct:   28 GLSWKERRQYAEDTSFLSPFDKALQSKWEQKMNEGLFRYPLRNLQTKILPGSLSYVAQLNIQRSINRRKPE-DIWSIQQKFNPNQFNYNKIKPEEIVFQMIRSE 130          
BLAST of CF509874 vs. ExPASy Swiss-Prot
Match: CO058_DANRE (UPF0580 protein C15orf58 homolog OS=Danio rerio GN=zgc:153343 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 6.836e-23
Identity = 29/64 (45.31%), Postives = 42/64 (65.62%), Query Frame = 1
Query:  487 VAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLH 678
            V INVSP+E+GH LL+P   +C PQ +   +    +     + +P FR+G+NSLG FA++NHLH
Sbjct:  120 VIINVSPLEFGHCLLVPEPEKCFPQVLTHLAVQTGIETVLLSADPGFRVGFNSLGGFASVNHLH 183          

HSP 2 Score: 62.3882 bits (150), Expect = 6.836e-23
Identity = 30/78 (38.46%), Postives = 47/78 (60.26%), Query Frame = 3
Query:  195 WEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASED 428
            W ++   GLFRY +   ETR++PG  G+IAQLN  R  ++R  +  +  V Q FD  +FNF K+  +E+LF+ +   +
Sbjct:   39 WTEKRNTGLFRYRLDELETRILPGSRGYIAQLNIMRGTERRKPQ-EILSVRQNFDPKQFNFNKINPKELLFELKRESE 115          
BLAST of CF509874 vs. ExPASy Swiss-Prot
Match: CO058_MOUSE (UPF0580 protein C15orf58 homolog OS=Mus musculus PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.437e-12
Identity = 37/98 (37.76%), Postives = 58/98 (59.18%), Query Frame = 3
Query:  159 PVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDG*SPVSPK 452
            P++  DS +   W  R++ GLFRY +   +T+++PG  GF+AQLN  R +++R  +  +  V Q FD  +FNF K+   EVLF+ +    G  P +PK
Sbjct:   55 PLSRFDSALRSAWRQRLELGLFRYRLEDLQTQILPGSVGFVAQLNIERGIQRRRPQ-NIRSVRQEFDPEQFNFNKIRPGEVLFRMQREPKG--PATPK 149          

HSP 2 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 38/95 (40.00%), Postives = 54/95 (56.84%), Query Frame = 1
Query:  409 SLRQAKMGEVQFH----PSAPIDVENSPSV-VAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLH 678
            +  + + GEV F     P  P   +    V V INVSP+E+GHVLL+P   + LPQR+      + L     + +P FR+G+NSLG  A++NHLH
Sbjct:  125 NFNKIRPGEVLFRMQREPKGPATPKQEDDVLVVINVSPLEWGHVLLVPAPAQGLPQRLLPGVLRVGLEAVLLSLHPGFRVGFNSLGGLASVNHLH 219          
BLAST of CF509874 vs. ExPASy Swiss-Prot
Match: CO058_HUMAN (UPF0580 protein C15orf58 OS=Homo sapiens GN=C15orf58 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.180e-12
Identity = 35/90 (38.89%), Postives = 54/90 (60.00%), Query Frame = 3
Query:  159 PVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASED 428
            P +  D+ +   W+ RV+ GLFRY +   +T+++PG  GF+AQLN  R +++RP +  +  V Q FD  +FNF K+   EVLF+     D
Sbjct:   55 PQSPFDAALCSAWKQRVELGLFRYRLRELQTQILPGAVGFVAQLNVERGVQRRPPQ-TIKSVRQAFDPVQFNFNKIRPGEVLFRLHREPD 143          

HSP 2 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 1
Query:  409 SLRQAKMGEVQFH----PSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLH 678
            +  + + GEV F     P  P  +     +V INVSP+E+GHVLL+P     LPQR+   +    +     + +P FR+G+NSLG  A++NHLH
Sbjct:  125 NFNKIRPGEVLFRLHREPDLPGTLLQEDILVVINVSPLEWGHVLLVPEPARQLPQRLLPGALRAGIEAVLLSLHPGFRVGFNSLGGLASVNHLH 218          
BLAST of CF509874 vs. ExPASy Swiss-Prot
Match: CO058_BOVIN (UPF0580 protein C15orf58 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.459e-12
Identity = 34/91 (37.36%), Postives = 53/91 (58.24%), Query Frame = 3
Query:  156 PPVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASED 428
            PP++  DS +   W  R++ GLFRY +    T+ +PG  GF+AQLN  R +++R  +  +  V Q FD  +FNF ++   EVLF+    +D
Sbjct:   54 PPLSHFDSALCSAWRQRMELGLFRYPLGELPTQTLPGTVGFVAQLNVERGVQRRCPQ-NIKSVRQEFDPEQFNFNQIRPGEVLFRLHRKQD 143          

HSP 2 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 37/94 (39.36%), Postives = 53/94 (56.38%), Query Frame = 1
Query:  409 SLRQAKMGEVQFHPSAPID----VENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLH 678
            +  Q + GEV F      D    V+    +V INVSP+E+GHVLL+P     LPQR+   +    +     + +P FR+G+NSLG  A++NHLH
Sbjct:  125 NFNQIRPGEVLFRLHRKQDCSGTVQQEDILVVINVSPLEWGHVLLVPEPARGLPQRLLPGALRAGVEAVLLSSHPGFRVGFNSLGGLASVNHLH 218          
BLAST of CF509874 vs. ExPASy Swiss-Prot
Match: CO058_MACFA (UPF0580 protein C15orf58 homolog OS=Macaca fascicularis GN=QflA-20034 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.036e-11
Identity = 33/90 (36.67%), Postives = 53/90 (58.89%), Query Frame = 3
Query:  159 PVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASED 428
            P +  D+ +   W+ RV+ GLFRY +   +T+++PG  GF+AQLN  R +++R  +  +  V Q FD  +FNF K+   EVL++     D
Sbjct:   55 PQSPFDAALCSAWKQRVELGLFRYRLRELQTQILPGVVGFVAQLNVERGVQRRRPQ-TIKSVRQAFDPEQFNFNKIQPGEVLYRLHREPD 143          
The following BLAST results are available for this feature:
BLAST of CF509874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CO058_XENTR5.177e-2743.42UPF0580 protein C15orf58 homolog OS=Xenopus tropic... [more]
CO058_XENLA8.772e-2745.21UPF0580 protein C15orf58 homolog OS=Xenopus laevis... [more]
CO058_DANRE6.836e-2345.31UPF0580 protein C15orf58 homolog OS=Danio rerio GN... [more]
CO058_MOUSE1.437e-1237.76UPF0580 protein C15orf58 homolog OS=Mus musculus P... [more]
CO058_HUMAN4.180e-1238.89UPF0580 protein C15orf58 OS=Homo sapiens GN=C15orf... [more]
CO058_BOVIN5.459e-1237.36UPF0580 protein C15orf58 homolog OS=Bos taurus PE=... [more]
CO058_MACFA6.036e-1136.67UPF0580 protein C15orf58 homolog OS=Macaca fascicu... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-382 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509874 ID=CF509874; Name=CF509874; organism=Citrus sinensis; type=EST; length=679bp
CTGCTGCTGCTGCTCGTCGTGTAAGCGGGTGCGGGAGGAATTGCTTGAAC
AAATGTTGCATTCAAGGTGCAAAGCTTCCTTTATATGCTTTCAAGAGGGT
GAACAAGTTTAAAACTGAAATGGGTGTGCATGGACACGAGGTTAGAGAGC
CCGAGCCTCCCGTTGCATTTCTGGACTCGCTCGTTCTTGGGGAGTGGGAG
GACCGCGTACAGAGAGGACTATTTCGCTATGATGTTACTGCCTGTGAAAC
CAGGGTCATTCCTGGTCAGTATGGTTTCATTGCTCAACTGAACGAGGGCC
GCCACCTGAAGAAAAGGCCTACTGAGTTCCGTGTTGATAAGGTCCTCCAG
CCTTTTGATGGGAACAAGTTCAACTTTACCAAAGTGGGGCAAGAAGAGGT
GCTCTTCCAGTTTGAGGCAAGCGAAGATGGGTGAAGTCCAGTTTCACCCA
AGTGCCCCCATTGATGTTGAGAATTCTCCAAGTGTTGTTGCCATCAATGT
GAGTCCTATTGAGTACGGGCATGTGCTGTTGATCCCACGAGTTCTTGAGT
GCTTGCCACAGAGGATTGACCGTGATAGCTTCTTGCTCGCACTTTACATG
GCTGCAGAAGCTGGGAATCCATACTTCAGGTTGGGTTACAACAGCTTGGG
TGCATTTGCTACCATCAACCACCTTCACT
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