CF509876
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF509876 vs. ExPASy Swiss-Prot
Match: RAE1L_ARATH (Rae1-like protein At1g80670 OS=Arabidopsis thaliana GN=At1g80670 PE=2 SV=2) HSP 1 Score: 174.866 bits (442), Expect = 2.132e-43 Identity = 83/103 (80.58%), Postives = 89/103 (86.41%), Query Frame = 3 Query: 222 MATFGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQVRCWEISRSGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLL 530 MATFGA A A N NPNKS EV+ P+DS+SSL FSP+A+ILVATSWDNQVRCWEISRSG +AS PKASISHD PVLCS WKDDGTTVFSGGCDKQ KMWPLL Sbjct: 1 MATFGAPATA-NSNPNKSYEVTPSPADSISSLSFSPRADILVATSWDNQVRCWEISRSGASLASAPKASISHDQPVLCSAWKDDGTTVFSGGCDKQAKMWPLL 102
BLAST of CF509876 vs. ExPASy Swiss-Prot
Match: RAE1L_XENTR (mRNA export factor OS=Xenopus tropicalis GN=rae1 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 5.111e-21 Identity = 51/102 (50.00%), Postives = 61/102 (59.80%), Query Frame = 3 Query: 231 FGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDNQVRCWEISRSGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPL 527 FG+ A N NP K IEV+ PP DS+S L FSP N L+A SW N VRCWE+ +G ++PKA H PVL W DDG+ VF+ CDK KMW L Sbjct: 18 FGSTAT-DNHNPMKDIEVTSPPDDSISCLSFSPPTLPGNFLIAGSWANDVRCWEVQDNGQ---TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115
BLAST of CF509876 vs. ExPASy Swiss-Prot
Match: RAEL1_PONAB (mRNA export factor OS=Pongo abelii GN=RAE1 PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 5.651e-20 Identity = 48/99 (48.48%), Postives = 57/99 (57.58%), Query Frame = 3 Query: 240 AAVATNQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDNQVRCWEISRSGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPL 527 +A N NP K IEV+ P DS+ L FSP N L+A SW N VRCWE+ SG ++PKA H PVL W DDG+ VF+ CDK KMW L Sbjct: 20 SATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115
BLAST of CF509876 vs. ExPASy Swiss-Prot
Match: RAE1L_MACFA (mRNA export factor OS=Macaca fascicularis GN=RAE1 PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 5.651e-20 Identity = 48/99 (48.48%), Postives = 57/99 (57.58%), Query Frame = 3 Query: 240 AAVATNQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDNQVRCWEISRSGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPL 527 +A N NP K IEV+ P DS+ L FSP N L+A SW N VRCWE+ SG ++PKA H PVL W DDG+ VF+ CDK KMW L Sbjct: 20 SATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115
BLAST of CF509876 vs. ExPASy Swiss-Prot
Match: RAE1L_HUMAN (mRNA export factor OS=Homo sapiens GN=RAE1 PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 5.651e-20 Identity = 48/99 (48.48%), Postives = 57/99 (57.58%), Query Frame = 3 Query: 240 AAVATNQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDNQVRCWEISRSGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPL 527 +A N NP K IEV+ P DS+ L FSP N L+A SW N VRCWE+ SG ++PKA H PVL W DDG+ VF+ CDK KMW L Sbjct: 20 SATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115
BLAST of CF509876 vs. ExPASy Swiss-Prot
Match: RAE1L_DANRE (mRNA export factor OS=Danio rerio GN=rae1 PE=2 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 1.259e-19 Identity = 46/94 (48.94%), Postives = 56/94 (59.57%), Query Frame = 3 Query: 255 NQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDNQVRCWEISRSGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPL 527 + NP K +EV+ PP DS+S L FSP N L+ SW N VRCWE+ +G +VPKA H PVL W DDG+ VF+ CDK KMW L Sbjct: 25 SHNPMKDVEVTSPPDDSISCLAFSPPTMPGNFLIGGSWANDVRCWEVQDNGQ---TVPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115
BLAST of CF509876 vs. ExPASy Swiss-Prot
Match: RAEL1_PIG (mRNA export factor OS=Sus scrofa GN=RAE1 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.644e-19 Identity = 47/94 (50.00%), Postives = 55/94 (58.51%), Query Frame = 3 Query: 255 NQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDNQVRCWEISRSGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPL 527 N NP K IEV+ P DS+ L FSP N L+A SW N VRCWE+ SG ++PKA H PVL W DDG+ VF+ CDK KMW L Sbjct: 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115
BLAST of CF509876 vs. ExPASy Swiss-Prot
Match: RAE1L_RAT (mRNA export factor OS=Rattus norvegicus GN=Rae1 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.644e-19 Identity = 47/94 (50.00%), Postives = 55/94 (58.51%), Query Frame = 3 Query: 255 NQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDNQVRCWEISRSGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPL 527 N NP K IEV+ P DS+ L FSP N L+A SW N VRCWE+ SG ++PKA H PVL W DDG+ VF+ CDK KMW L Sbjct: 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115
BLAST of CF509876 vs. ExPASy Swiss-Prot
Match: RAE1L_MOUSE (mRNA export factor OS=Mus musculus GN=Rae1 PE=1 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.644e-19 Identity = 47/94 (50.00%), Postives = 55/94 (58.51%), Query Frame = 3 Query: 255 NQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDNQVRCWEISRSGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPL 527 N NP K IEV+ P DS+ L FSP N L+A SW N VRCWE+ SG ++PKA H PVL W DDG+ VF+ CDK KMW L Sbjct: 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115
BLAST of CF509876 vs. ExPASy Swiss-Prot
Match: RAE1L_BOVIN (mRNA export factor OS=Bos taurus GN=RAE1 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.644e-19 Identity = 47/94 (50.00%), Postives = 55/94 (58.51%), Query Frame = 3 Query: 255 NQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDNQVRCWEISRSGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPL 527 N NP K IEV+ P DS+ L FSP N L+A SW N VRCWE+ SG ++PKA H PVL W DDG+ VF+ CDK KMW L Sbjct: 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115 The following BLAST results are available for this feature:
BLAST of CF509876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
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Sequences
The
following sequences are available for this feature:
EST sequence >CF509876 ID=CF509876; Name=CF509876; organism=Citrus sinensis; type=EST; length=531bpback to top |