CF509876

Overview
NameCF509876
Unique NameCF509876
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length531
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig923 contig Csv1_Contig923:1..531. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509876 vs. ExPASy Swiss-Prot
Match: RAE1L_ARATH (Rae1-like protein At1g80670 OS=Arabidopsis thaliana GN=At1g80670 PE=2 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 2.132e-43
Identity = 83/103 (80.58%), Postives = 89/103 (86.41%), Query Frame = 3
Query:  222 MATFGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQVRCWEISRSGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLL 530
            MATFGA A A N NPNKS EV+  P+DS+SSL FSP+A+ILVATSWDNQVRCWEISRSG  +AS PKASISHD PVLCS WKDDGTTVFSGGCDKQ KMWPLL
Sbjct:    1 MATFGAPATA-NSNPNKSYEVTPSPADSISSLSFSPRADILVATSWDNQVRCWEISRSGASLASAPKASISHDQPVLCSAWKDDGTTVFSGGCDKQAKMWPLL 102          
BLAST of CF509876 vs. ExPASy Swiss-Prot
Match: RAE1L_XENTR (mRNA export factor OS=Xenopus tropicalis GN=rae1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.111e-21
Identity = 51/102 (50.00%), Postives = 61/102 (59.80%), Query Frame = 3
Query:  231 FGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDNQVRCWEISRSGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPL 527
            FG+ A   N NP K IEV+ PP DS+S L FSP     N L+A SW N VRCWE+  +G    ++PKA   H  PVL   W DDG+ VF+  CDK  KMW L
Sbjct:   18 FGSTAT-DNHNPMKDIEVTSPPDDSISCLSFSPPTLPGNFLIAGSWANDVRCWEVQDNGQ---TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115          
BLAST of CF509876 vs. ExPASy Swiss-Prot
Match: RAEL1_PONAB (mRNA export factor OS=Pongo abelii GN=RAE1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.651e-20
Identity = 48/99 (48.48%), Postives = 57/99 (57.58%), Query Frame = 3
Query:  240 AAVATNQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDNQVRCWEISRSGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPL 527
            +A   N NP K IEV+  P DS+  L FSP     N L+A SW N VRCWE+  SG    ++PKA   H  PVL   W DDG+ VF+  CDK  KMW L
Sbjct:   20 SATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115          
BLAST of CF509876 vs. ExPASy Swiss-Prot
Match: RAE1L_MACFA (mRNA export factor OS=Macaca fascicularis GN=RAE1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.651e-20
Identity = 48/99 (48.48%), Postives = 57/99 (57.58%), Query Frame = 3
Query:  240 AAVATNQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDNQVRCWEISRSGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPL 527
            +A   N NP K IEV+  P DS+  L FSP     N L+A SW N VRCWE+  SG    ++PKA   H  PVL   W DDG+ VF+  CDK  KMW L
Sbjct:   20 SATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115          
BLAST of CF509876 vs. ExPASy Swiss-Prot
Match: RAE1L_HUMAN (mRNA export factor OS=Homo sapiens GN=RAE1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.651e-20
Identity = 48/99 (48.48%), Postives = 57/99 (57.58%), Query Frame = 3
Query:  240 AAVATNQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDNQVRCWEISRSGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPL 527
            +A   N NP K IEV+  P DS+  L FSP     N L+A SW N VRCWE+  SG    ++PKA   H  PVL   W DDG+ VF+  CDK  KMW L
Sbjct:   20 SATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115          
BLAST of CF509876 vs. ExPASy Swiss-Prot
Match: RAE1L_DANRE (mRNA export factor OS=Danio rerio GN=rae1 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.259e-19
Identity = 46/94 (48.94%), Postives = 56/94 (59.57%), Query Frame = 3
Query:  255 NQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDNQVRCWEISRSGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPL 527
            + NP K +EV+ PP DS+S L FSP     N L+  SW N VRCWE+  +G    +VPKA   H  PVL   W DDG+ VF+  CDK  KMW L
Sbjct:   25 SHNPMKDVEVTSPPDDSISCLAFSPPTMPGNFLIGGSWANDVRCWEVQDNGQ---TVPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115          
BLAST of CF509876 vs. ExPASy Swiss-Prot
Match: RAEL1_PIG (mRNA export factor OS=Sus scrofa GN=RAE1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.644e-19
Identity = 47/94 (50.00%), Postives = 55/94 (58.51%), Query Frame = 3
Query:  255 NQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDNQVRCWEISRSGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPL 527
            N NP K IEV+  P DS+  L FSP     N L+A SW N VRCWE+  SG    ++PKA   H  PVL   W DDG+ VF+  CDK  KMW L
Sbjct:   25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115          
BLAST of CF509876 vs. ExPASy Swiss-Prot
Match: RAE1L_RAT (mRNA export factor OS=Rattus norvegicus GN=Rae1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.644e-19
Identity = 47/94 (50.00%), Postives = 55/94 (58.51%), Query Frame = 3
Query:  255 NQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDNQVRCWEISRSGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPL 527
            N NP K IEV+  P DS+  L FSP     N L+A SW N VRCWE+  SG    ++PKA   H  PVL   W DDG+ VF+  CDK  KMW L
Sbjct:   25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115          
BLAST of CF509876 vs. ExPASy Swiss-Prot
Match: RAE1L_MOUSE (mRNA export factor OS=Mus musculus GN=Rae1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.644e-19
Identity = 47/94 (50.00%), Postives = 55/94 (58.51%), Query Frame = 3
Query:  255 NQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDNQVRCWEISRSGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPL 527
            N NP K IEV+  P DS+  L FSP     N L+A SW N VRCWE+  SG    ++PKA   H  PVL   W DDG+ VF+  CDK  KMW L
Sbjct:   25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115          
BLAST of CF509876 vs. ExPASy Swiss-Prot
Match: RAE1L_BOVIN (mRNA export factor OS=Bos taurus GN=RAE1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.644e-19
Identity = 47/94 (50.00%), Postives = 55/94 (58.51%), Query Frame = 3
Query:  255 NQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDNQVRCWEISRSGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPL 527
            N NP K IEV+  P DS+  L FSP     N L+A SW N VRCWE+  SG    ++PKA   H  PVL   W DDG+ VF+  CDK  KMW L
Sbjct:   25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115          
The following BLAST results are available for this feature:
BLAST of CF509876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RAE1L_ARATH2.132e-4380.58Rae1-like protein At1g80670 OS=Arabidopsis thalian... [more]
RAE1L_XENTR5.111e-2150.00mRNA export factor OS=Xenopus tropicalis GN=rae1 P... [more]
RAEL1_PONAB5.651e-2048.48mRNA export factor OS=Pongo abelii GN=RAE1 PE=2 SV... [more]
RAE1L_MACFA5.651e-2048.48mRNA export factor OS=Macaca fascicularis GN=RAE1 ... [more]
RAE1L_HUMAN5.651e-2048.48mRNA export factor OS=Homo sapiens GN=RAE1 PE=1 SV... [more]
RAE1L_DANRE1.259e-1948.94mRNA export factor OS=Danio rerio GN=rae1 PE=2 SV=... [more]
RAEL1_PIG1.644e-1950.00mRNA export factor OS=Sus scrofa GN=RAE1 PE=3 SV=1[more]
RAE1L_RAT1.644e-1950.00mRNA export factor OS=Rattus norvegicus GN=Rae1 PE... [more]
RAE1L_MOUSE1.644e-1950.00mRNA export factor OS=Mus musculus GN=Rae1 PE=1 SV... [more]
RAE1L_BOVIN1.644e-1950.00mRNA export factor OS=Bos taurus GN=RAE1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-384 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509876 ID=CF509876; Name=CF509876; organism=Citrus sinensis; type=EST; length=531bp
CGTGGATACAACGCTAGGCCGGGTATGCGCAGAGTCTTAACCTACACCCA
CTACATTTCTCCTCTGTCCTCTCTATAAATAGCTTTTCGTTTCCCTCTTC
TTTCAAAATCATCACCGAATCAACAAAGAACCTGTCGCTCTGTCACTCAC
TAACAAAATATCACGAAACGATCAATAATTAGCAAGTTATTAGCAAATTA
ACTGAACTGCTTCAAGCAATAATGGCTACTTTCGGTGCTGCTGCCGTTGC
CACCAATCAAAACCCTAATAAGTCCATCGAGGTGTCTCAACCTCCCAGTG
ATTCTGTTTCAAGCCTTTGTTTCAGTCCCAAGGCCAATATCTTGGTTGCA
ACCTCATGGGATAATCAGGTAAGGTGTTGGGAAATTTCACGCAGTGGAAC
TGGTGTGGCCAGTGTGCCCAAGGCATCAATTTCACATGACCATCCGGTCC
TATGCTCAACATGGAAGGATGATGGAACTACTGTCTTCTCTGGAGGATGT
GACAAGCAGGTTAAGATGTGGCCTTTACTCT
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