CF509878

Overview
NameCF509878
Unique NameCF509878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length408
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig557 contig Csv1_Contig557:122..529. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509878 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 6.545e-47
Identity = 87/142 (61.27%), Postives = 99/142 (69.72%), Query Frame = 2
Query:    2 CPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGE-----CDPDDGTAGDG--GELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNK 406
            CPGG CCS +GWCG T DYC  GCQS C+    G+     CD  D   GDG  G L  II +  F+ LL++RND RCPA  FYTY+AFI AAK FP FGN+G++ MRKREIAAF  QT HETTGGWPDAP G YAWGYC+ K
Sbjct:   34 CPGGLCCSSYGWCGTTVDYCGIGCQSQCDGGGGGDGGDDGCDGGDDGGGDGDDGYLSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLK 175          
BLAST of CF509878 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.690e-45
Identity = 78/133 (58.65%), Postives = 93/133 (69.92%), Query Frame = 2
Query:    2 CPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCF 400
            CPGG CCS+FGWCG T DYC  GCQS C+                 G++G++I+R MF D+L++RN+  CP + FYTYDAFI AAKAFP FG +G+ T RKREIAAF AQT HETTGGW  AP G YAWGYC+
Sbjct:   32 CPGGACCSKFGWCGNTADYCGSGCQSQCSST---------------GDIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCY 149          
BLAST of CF509878 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 3.970e-44
Identity = 79/133 (59.40%), Postives = 92/133 (69.17%), Query Frame = 2
Query:    2 CPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCF 400
            CPGG CCS+FGWCG TTDYC  GCQS C            G +    +L  +ISR  F+ +L++RND  CPA+ FYTYDAFI AAKA+P+FGN+G+   RKREIAAF  QT HETTGGW  AP G YAWGYCF
Sbjct:   39 CPGGNCCSQFGWCGSTTDYCGPGCQSQCG-----------GPSPAPTDLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCF 160          
BLAST of CF509878 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.971e-43
Identity = 78/133 (58.65%), Postives = 92/133 (69.17%), Query Frame = 2
Query:    2 CPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCF 400
            CPGG CCS+FGWCG TTDYC + CQS C            G +    +L  +ISR  F+ +L++RND  CPA+ FYTYDAFI AAKA+P+FGN+G+   RKREIAAF  QT HETTGGW  AP G YAWGYCF
Sbjct:   38 CPGGNCCSQFGWCGSTTDYCGKDCQSQCG-----------GPSPAPTDLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCF 159          
BLAST of CF509878 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 4.390e-43
Identity = 80/134 (59.70%), Postives = 93/134 (69.40%), Query Frame = 2
Query:    2 CPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCF 400
            CP G CCS+FGWCG T DYC  G CQS C     G   P   T   GG+LG IIS  MF+ +L++RND  C  + FY+Y+AFI AA++FP FG SG+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC+
Sbjct:   35 CPSGLCCSKFGWCGNTNDYCGPGNCQSQCP----GGPTPTPPTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCW 164          
BLAST of CF509878 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 1.668e-42
Identity = 79/136 (58.09%), Postives = 91/136 (66.91%), Query Frame = 2
Query:    2 CPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGE----LGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYC 397
            CPGG CCS +GWCG T DYC +GCQS C+    G      G  G GG     L  II   MF+D+L+YRND +CPA  FYTY+AFI AAK FP FGN+G++ MRKREIAAF  QT HET G WP A G +Y WGYC
Sbjct:   33 CPGGLCCSSYGWCGTTADYCGDGCQSQCDGGGGGGGGGGGGGGGGGGGGDGYLSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETNGWWPAAQGDQYDWGYC 168          
BLAST of CF509878 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 1.668e-42
Identity = 76/133 (57.14%), Postives = 92/133 (69.17%), Query Frame = 2
Query:    2 CPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCF 400
            CPGG CCS+FGWCG T++YC +GCQS C+           G++G GG L  +IS   F ++L++RND  C  + FYTYDAF+ AAKAFP F N G+   +KREIAAF  QT HETTGGWP AP G YAWGYCF
Sbjct:   32 CPGGLCCSKFGWCGSTSEYCGDGCQSQCS-----------GSSG-GGTLSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCF 152          
BLAST of CF509878 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.845e-42
Identity = 78/136 (57.35%), Postives = 95/136 (69.85%), Query Frame = 2
Query:    2 CPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECD-PDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNK 406
            CP   CCSR+GWCG T+D+C +GCQS C+   CG    P   +  DG  +G I+ R +FE LL +RND  CPAR FYTY+AF+ AA AFPAFG +GN   RKRE+AAF  QT HETTGGWP AP G ++WGYCF +
Sbjct:   44 CPNCLCCSRWGWCGTTSDFCGDGCQSQCSG--CGPTPTPTPPSPSDG--VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQ 175          
BLAST of CF509878 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.716e-42
Identity = 80/136 (58.82%), Postives = 92/136 (67.65%), Query Frame = 2
Query:    2 CPGGECCSRFGWCGLTTDYCCE-GCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNK 406
            CP G CCS FGWCG T  YC + GCQS C     G   P     G  G+L  IISR  F+D+L++RND  CPAR FYTYDAFI AAK+FP FG +G+   RK+EIAAFF QT HETTGGW  AP G Y+WGYCF +
Sbjct:   32 CPNGLCCSEFGWCGDTEAYCKQPGCQSQC-----GGTPP-----GPTGDLSGIISRSQFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQ 157          
BLAST of CF509878 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.854e-42
Identity = 73/135 (54.07%), Postives = 92/135 (68.15%), Query Frame = 2
Query:    2 CPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNK 406
            CP   CCS++GWCG T+ YC  GCQS C+   CG   P   + G G  +  I+SR +F+ +L +RND  CPA+ FYTYDAF+ AA AFP+F  +G+   RKRE+AAF AQT HETTGGW  AP G Y+WGYCF +
Sbjct:   32 CPNCLCCSQYGWCGSTSAYCGSGCQSQCSGS-CGGGGPTPPSGGGGSGVASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKE 165          
The following BLAST results are available for this feature:
BLAST of CF509878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI6_POPTR6.545e-4761.27Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHIB_VITVI4.690e-4558.65Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHIT_PHAVU3.970e-4459.40Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI5_PHAVU1.971e-4358.65Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI1_TOBAC4.390e-4359.70Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHIB_POPTR1.668e-4258.09Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHI2_PEA1.668e-4257.14Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI2_ORYSJ2.845e-4257.35Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_BRANA3.716e-4258.82Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHI1_ORYSJ4.854e-4254.07Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-386 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509878 ID=CF509878; Name=CF509878; organism=Citrus sinensis; type=EST; length=408bp
GTGCCCAGGAGGGGAGTGTTGTAGTCGATTTGGTTGGTGTGGCCTAACAA
CAGACTACTGTTGTGAAGGCTGCCAAAGTAACTGTAATCAGGTTGTTTGC
GGTGAATGTGATCCCGACGACGGGACGGCTGGTGATGGCGGTGAACTGGG
CAAGATCATCTCAAGGAAGATGTTTGAAGACTTGCTTGAGTATAGAAATG
ATAAACGATGCCCTGCCAGATGCTTCTACACTTATGATGCTTTTATAGAG
GCAGCCAAAGCTTTTCCAGCCTTTGGTAATTCTGGAAATGAAACCATGCG
TAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGGCCATGAAACTACTG
GGGGATGGCCCGATGCACCTGGTGGCGAATATGCTTGGGGATATTGCTTT
AATAAGGA
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