CF509883

Overview
NameCF509883
Unique NameCF509883
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7698 contig Csv1_Contig7698:323..810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509883 vs. ExPASy Swiss-Prot
Match: DCOR_DATST (Ornithine decarboxylase OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.237e-41
Identity = 89/161 (55.28%), Postives = 111/161 (68.94%), Query Frame = 2
Query:    5 LAALGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXXXXXXDTAARTSNNKMRVLDIGG 487
            L+A+GSNFDC SR+EIE VL LG+SPDRI++ANPCKP S I +AA VGVNLTT DS +E+ KIR  HPK +LL+RIK  DD  A+ P+  KYGA   P+E+ PLL+ A+A+ L+V GVSFH+GS                   +TAAR   +KM VLDIGG
Sbjct:  105 LSAMGSNFDCASRAEIEYVLSLGISPDRIVFANPCKPESDIIFAAKVGVNLTTFDSEDEVYKIRKHHPKCELLLRIKPMDDGNARCPMGPKYGA--LPEEVEPLLRTAQAARLTVSGVSFHIGSGDADSKAYLGAIAAAKGVFETAARFGMSKMTVLDIGG 263          
BLAST of CF509883 vs. ExPASy Swiss-Prot
Match: DCOR_CAPAN (Ornithine decarboxylase OS=Capsicum annuum GN=ODC PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 4.399e-39
Identity = 86/161 (53.42%), Postives = 109/161 (67.70%), Query Frame = 2
Query:    5 LAALGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXXXXXXDTAARTSNNKMRVLDIGG 487
            LAA+GSNF C SR+EIE VL LG+SP+RI++ANPCKP S I +A  VGVNLTT DS +E+ KI+  HPK +LL+RIK  +D  A+ P+  KYGA   P+EI PLL+ A+AS L+V GVSFH+GS                   +TAA+   +KM VLDIGG
Sbjct:  109 LAAMGSNFVCASRAEIEYVLSLGISPERIVFANPCKPESDIIFAEKVGVNLTTYDSEDEVYKIKKHHPKCELLLRIKPMNDGNARCPMGPKYGA--LPEEIEPLLRIAQASRLTVSGVSFHIGSGDADSNAYLGAIAAAKQVFETAAKFGMSKMNVLDIGG 267          
BLAST of CF509883 vs. ExPASy Swiss-Prot
Match: DCOR_SOLLC (Ornithine decarboxylase OS=Solanum lycopersicum GN=ODC PE=2 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 9.799e-39
Identity = 85/161 (52.80%), Postives = 107/161 (66.46%), Query Frame = 2
Query:    5 LAALGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXXXXXXDTAARTSNNKMRVLDIGG 487
            L+A+GSNFDC SR+EIE VL  G+SPDRI++ANPCKP S I +A  +GVNLTT DS +E+ KIR  HPK +LL+RIK   D  A+ P+  KYGA   P+EI PLL+ A+A+ L+V GVSFH+GS                   +TAA+    KM VLDIGG
Sbjct:  105 LSAMGSNFDCASRAEIEYVLSHGISPDRIVFANPCKPESDIIFAEKIGVNLTTYDSEDEVYKIRKHHPKCELLLRIKPMTDGNARCPMGPKYGA--LPEEIEPLLRTAQAARLTVSGVSFHIGSGDADSNAYLGAIAAAKQVFETAAQLGMPKMTVLDIGG 263          
BLAST of CF509883 vs. ExPASy Swiss-Prot
Match: DCOR_YEAST (Ornithine decarboxylase OS=Saccharomyces cerevisiae GN=SPE1 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 8.315e-30
Identity = 75/162 (46.30%), Postives = 99/162 (61.11%), Query Frame = 2
Query:    5 LAALGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXXXXXXDTAARTSN-NKMRVLDIGG 487
            LA LG NFDC S+ EI+ VL + +SPDRI+YANPCK  S I+YAAS  V  +T D+VEEL KI+ +HP+S LL+RI + DDS A+  L +KYG     + +  LLKA +  GL++ GVSFHVGS                   D AA       +++LD+GG
Sbjct:  127 LAELGVNFDCASKVEIDRVLSMNISPDRIVYANPCKVASFIRYAASKNVMKSTFDNVEELHKIKKFHPESQLLLRI-ATDDSTAQCRLSTKYGC--EMENVDVLLKAIKELGLNLAGVSFHVGSGASDFTSLYKAVRDARTVFDKAANEYGLPPLKILDVGG 285          
BLAST of CF509883 vs. ExPASy Swiss-Prot
Match: DCOR_DICDI (Probable ornithine decarboxylase OS=Dictyostelium discoideum GN=odc PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 5.959e-28
Identity = 70/161 (43.48%), Postives = 99/161 (61.49%), Query Frame = 2
Query:    5 LAALGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXXXXXXDTAARTSNNKMRVLDIGG 487
            L ALG+N+DC SR+EIE+VL LGV P RIIYANPCK +S +K+A +  V L T D++ EL+KI  + P+++L++RI +PDDS +     SK+G   H  +   LL+ A+   L VVGVSFHVGS                   D A +  N ++ ++D+GG
Sbjct:  127 LDALGTNYDCASRTEIESVLNLGVDPSRIIYANPCKQISALKFARAHNVKLMTFDNLSELEKIEKFFPEAELVLRI-APDDSKSVMRFGSKFGV--HIDDCNDLLEMAKEMNLKVVGVSFHVGSGCQSGDSYADALIMVKSVFDMAKKL-NMELTLVDVGG 283          
BLAST of CF509883 vs. ExPASy Swiss-Prot
Match: DCOR_SCHPO (Ornithine decarboxylase OS=Schizosaccharomyces pombe GN=spe1 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.734e-27
Identity = 64/124 (51.61%), Postives = 86/124 (69.35%), Query Frame = 2
Query:    5 LAALGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGS 376
            L   G+ FDC S+ E+E +L LGVSPDRI+YANPCK +++++YAAS G+NL T D+ +EL K++  HP S LL+RI S DDS +   L  K+GA     +   LL  A++  L+VVGVSFHVGS
Sbjct:  109 LNKFGTGFDCASKGELEQILGLGVSPDRIVYANPCKAITYVRYAASKGINLMTFDNADELYKVKQHHPNSRLLLRI-STDDSNSLCRLSLKFGAS--LDDTGKLLDIAKSLELNVVGVSFHVGS 229          
BLAST of CF509883 vs. ExPASy Swiss-Prot
Match: DCOR_TRYBB (Ornithine decarboxylase OS=Trypanosoma brucei brucei PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 3.862e-27
Identity = 69/161 (42.86%), Postives = 95/161 (59.01%), Query Frame = 2
Query:    5 LAALGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXXXXXXDTAARTSNNKMRVLDIGG 487
            LAALG+ FDC S +EI+ V  +GV P++IIYANPCK +SHI+YA   GV++ T D V+EL+K+   HPK+ +++RI S DDS A+  L  K+GA    ++   +L+ A+   + V GVSFHVGS                   D       N M +LDIGG
Sbjct:   78 LAALGTGFDCASNTEIQRVRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRI-STDDSLARCRLSVKFGA--KVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDSRFVFDMGTELGFN-MHILDIGG 234          
BLAST of CF509883 vs. ExPASy Swiss-Prot
Match: DCOR_BOVIN (Ornithine decarboxylase OS=Bos taurus GN=ODC1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.045e-27
Identity = 74/161 (45.96%), Postives = 94/161 (58.39%), Query Frame = 2
Query:    5 LAALGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXXXXXXDTAARTSNNKMRVLDIGG 487
            LAA+G+ FDC S++EI+ V  LGV P+RIIYANPCK VS IKYAA+ GV + T DS  EL K+   HPK+ L++RI + DDS A   L  K+GA      +  LL+ A+   + V+GVSFHVGS                   D  A    N M +LDIGG
Sbjct:   80 LAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRI-ATDDSKAVCRLSVKFGATLKTSRL--LLERAKELDIDVIGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFN-MYLLDIGG 236          
BLAST of CF509883 vs. ExPASy Swiss-Prot
Match: DCOR_HUMAN (Ornithine decarboxylase OS=Homo sapiens GN=ODC1 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.917e-26
Identity = 74/161 (45.96%), Postives = 93/161 (57.76%), Query Frame = 2
Query:    5 LAALGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXXXXXXDTAARTSNNKMRVLDIGG 487
            LAA G+ FDC S++EI+ V  LGV P+RIIYANPCK VS IKYAA+ GV + T DS  EL K+   HPK+ L++RI + DDS A   L  K+GA      +  LL+ A+   + VVGVSFHVGS                   D  A    + M +LDIGG
Sbjct:   80 LAATGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRI-ATDDSKAVCRLSVKFGATLRTSRL--LLERAKELNIDVVGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFS-MYLLDIGG 236          
BLAST of CF509883 vs. ExPASy Swiss-Prot
Match: DCOR_CHICK (Ornithine decarboxylase (Fragment) OS=Gallus gallus GN=ODC1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.504e-26
Identity = 74/161 (45.96%), Postives = 94/161 (58.39%), Query Frame = 2
Query:    5 LAALGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXXXXXXDTAARTSNNKMRVLDIGG 487
            LA LG+ FDC S++EI+ V  +GV P+RIIYANPCK +S IK+AA+ GV + T DS  EL KI   HPK+ LL+RI + DDS A   L  K+GA      +  LL+ A+   L++VGVSFHVGS                   D  A    N M +LDIGG
Sbjct:   70 LAVLGAGFDCASKTEIQLVQSIGVPPERIIYANPCKQLSQIKHAANSGVRMMTFDSEVELMKIARPHPKAKLLLRI-TTDDSKAVCRLSVKFGATLKTSRL--LLERAKELDLAIVGVSFHVGSGCTDPETFVQAISDARCVFDMGAELGFN-MYLLDIGG 226          
The following BLAST results are available for this feature:
BLAST of CF509883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
DCOR_DATST1.237e-4155.28Ornithine decarboxylase OS=Datura stramonium PE=2 ... [more]
DCOR_CAPAN4.399e-3953.42Ornithine decarboxylase OS=Capsicum annuum GN=ODC ... [more]
DCOR_SOLLC9.799e-3952.80Ornithine decarboxylase OS=Solanum lycopersicum GN... [more]
DCOR_YEAST8.315e-3046.30Ornithine decarboxylase OS=Saccharomyces cerevisia... [more]
DCOR_DICDI5.959e-2843.48Probable ornithine decarboxylase OS=Dictyostelium ... [more]
DCOR_SCHPO1.734e-2751.61Ornithine decarboxylase OS=Schizosaccharomyces pom... [more]
DCOR_TRYBB3.862e-2742.86Ornithine decarboxylase OS=Trypanosoma brucei bruc... [more]
DCOR_BOVIN5.045e-2745.96Ornithine decarboxylase OS=Bos taurus GN=ODC1 PE=2... [more]
DCOR_HUMAN1.917e-2645.96Ornithine decarboxylase OS=Homo sapiens GN=ODC1 PE... [more]
DCOR_CHICK2.504e-2645.96Ornithine decarboxylase (Fragment) OS=Gallus gallu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-391 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509883 ID=CF509883; Name=CF509883; organism=Citrus sinensis; type=EST; length=488bp
GGCACTTGCAGCTCTTGGCTCAAACTTTGACTGTGGAAGCCGATCCGAGA
TTGAAGCTGTTTTGTTACTAGGTGTTTCACCGGATCGTATCATTTACGCA
AACCCGTGTAAGCCTGTATCTCACATCAAGTATGCTGCGAGTGTTGGCGT
CAACTTGACAACCGTTGACTCAGTAGAGGAGCTCGACAAGATTCGGAACT
GGCATCCGAAATCTGATTTATTGATCAGGATCAAATCCCCGGATGATAGC
GGAGCGAAGTATCCGTTGGATTCCAAATATGGCGCTGGTCATCATCCTCA
GGAAATTATGCCTCTTCTCAAAGCCGCTGAAGCTTCAGGGCTCTCTGTAG
TTGGTGTATCATTCCACGTTGGAAGCGAAGCTACAAACTTTGCTGCATTT
CGCGGAGCCATAGCAGCGGCTAAAGCAGTCTTTGACACAGCCGCTCGCAC
GAGTAACAACAAAATGCGTGTACTAGATATCGGCGGCG
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