CF509890

Overview
NameCF509890
Unique NameCF509890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length520
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF509890_ssr1 microsatellite CF509890_ssr1:1..16. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig926 contig Csv1_Contig926:1..523. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509890 vs. ExPASy Swiss-Prot
Match: URED_ANADF (Urease accessory protein ureD OS=Anaeromyxobacter sp. (strain Fw109-5) GN=ureD PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.573e-25
Identity = 56/138 (40.58%), Postives = 89/138 (64.49%), Query Frame = 1
Query:   91 CFSKYPLKFIIPNKVGSSETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQILEAKIGSDALLAVIPDPVTCFSTARYSQKQIFRVVLDSSLVIVDWITSGRHESGEKWDFELYRS 504
            C +  PL+ + P+  G       W+ + ++GGG+++GD +S E+ V     A+L+TQA TK+Y+S G  +S Q L A++G+ ALLA +P PV+CFS AR+ Q+Q F +   +SL+ +D + +GR   GE+W F+ YRS
Sbjct:   50 CVASSPLQLLAPSPRGR----CAWIISASHGGGLLAGDEVSLEVDVGAGAVALLSTQAGTKIYRSRGEVAS-QGLSARVGAGALLAALPHPVSCFSGARFRQEQRFELARGASLLWLDALVAGRIARGERWAFDEYRS 182          
BLAST of CF509890 vs. ExPASy Swiss-Prot
Match: URED_SORC5 (Urease accessory protein ureD OS=Sorangium cellulosum (strain So ce56) GN=ureD PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 8.047e-24
Identity = 58/139 (41.73%), Postives = 83/139 (59.71%), Query Frame = 1
Query:   88 RCFSKYPLKFIIPNKVGSSETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQILEAKIGSDALLAVIPDPVTCFSTARYSQKQIFRVVLDSSLVIVDWITSGRHESGEKWDFELYRS 504
            +  ++ PLK + P   G     A WV+  ++GGG+V GD ++    V     A+L+TQASTKVY+S     S Q LEA++ +  LL  IPDPV CF+ +RY Q     +  D+SLV+VD ++SGR   GE+W F+ Y S
Sbjct:   67 KALARSPLKLLAPKNHGQ----AAWVFVASFGGGLVGGDELNLHARVGRGAAALLSTQASTKVYRS--PLVSRQRLEAEVQAGGLLVAIPDPVVCFAGSRYEQDIDVALADDASLVLVDALSSGRSARGERWAFDRYAS 199          
BLAST of CF509890 vs. ExPASy Swiss-Prot
Match: URED_SCHPO (Uncharacterized urease accessory protein ureD-like OS=Schizosaccharomyces pombe GN=SPAC3A12.09c PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.050e-20
Identity = 55/145 (37.93%), Postives = 84/145 (57.93%), Query Frame = 1
Query:   94 FSKYPLKFIIPNKVGSSETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSL-GSKSSEQILEAKIGSDALLAVIPDPVTCFSTARYSQKQIFRVVLD---SSLVIVDWITSGRHESGEKWDFELYRSTNHI 516
            F KYPLK I P     ++ D   +Y ++YGGG+VSGD ++ +I V    T  + +Q +TK+YK + G  +++Q L+ ++G++AL  ++ DPV  F  + Y Q Q F  VL+   SSL ++DW   GR    E+W    Y S N I
Sbjct:   23 FCKYPLKLIAPK----TKLDFSILYIMSYGGGLVSGDRVALDIIVGKNATLCIQSQGNTKLYKQIPGKPATQQKLDVEVGTNALCLLLQDPVQPFGDSNYIQTQNF--VLEDETSSLALLDWTLHGRSHINEQWSMRSYVSKNCI 161          
BLAST of CF509890 vs. ExPASy Swiss-Prot
Match: URED_CYTH3 (Urease accessory protein ureD OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=ureD PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.410e-12
Identity = 32/107 (29.91%), Postives = 62/107 (57.94%), Query Frame = 1
Query:  178 YGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQILEAKIGSDALLAVIPDPVTCFSTARYSQKQIFRVVLDSSLVIVDWITSGRHESGEKWDFELY 498
            YGGG V GDSI   I       +  ++QA+T++Y+S   K+ +Q +   +G +AL+  + DPV     + + Q   +++  ++ L+++DW  +GR  +GE++ F+ +
Sbjct:   48 YGGGFVEGDSIDLTIDCKADTVSAFSSQANTRIYRSEHGKTCKQTITGTVGENALVVFMGDPVVPHQKSIFEQHLFWKLEKNAVLLVIDWFEAGRILNGERFAFDSF 154          
BLAST of CF509890 vs. ExPASy Swiss-Prot
Match: URED_BACC1 (Urease accessory protein ureD OS=Bacillus cereus (strain ATCC 10987) GN=ureD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.056e-11
Identity = 37/120 (30.83%), Postives = 65/120 (54.17%), Query Frame = 1
Query:  160 WVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQILEAKIGSDALLAVIPDPVTCFSTARYSQKQIFRVVLDSSLVIVDWITSGRHESGEKWDFELYRSTNHIF 519
            + Y +  GGG + GD  S  I V       +T+Q++TKVYK+  S + ++ L   IG +A +  +PDP+  +  A Y QK    +  +S+L++ D +T G   + EK+ ++ + S   I+
Sbjct:   45 YYYIMNSGGGYLKGDFYSININVGKDAKTYITSQSATKVYKTPNSYALQE-LNFYIGQNAAMEYLPDPLIMYKDAAYKQKTNIYMQNNSTLILCDSVTPGWSPNMEKFTYQYFDSLTKIY 163          
The following BLAST results are available for this feature:
BLAST of CF509890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
URED_ANADF5.573e-2540.58Urease accessory protein ureD OS=Anaeromyxobacter ... [more]
URED_SORC58.047e-2441.73Urease accessory protein ureD OS=Sorangium cellulo... [more]
URED_SCHPO7.050e-2037.93Uncharacterized urease accessory protein ureD-like... [more]
URED_CYTH35.410e-1229.91Urease accessory protein ureD OS=Cytophaga hutchin... [more]
URED_BACC12.056e-1130.83Urease accessory protein ureD OS=Bacillus cereus (... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-398 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509890 ID=CF509890; Name=CF509890; organism=Citrus sinensis; type=EST; length=520bp
GAGAGAGAGAGAGAGATGGAATCAAAAATAGAAGCAGCAACAGGAAAGTT
GGTGGTGAAGAAAGTAGGGGGGAAATCAACAGTGACCAGATGTTTTTCTA
AATATCCTCTCAAATTCATCATTCCCAATAAGGTGGGTTCCTCAGAAACT
GATGCTGTTTGGGTTTACACTCTTACTTATGGTGGTGGGATTGTATCTGG
AGATTCAATTTCATGTGAAATTACCGTAGCAGATGCTTGCACTGCAGTTC
TAACCACCCAAGCTTCCACTAAGGTCTACAAGTCCCTGGGGTCCAAGTCT
TCTGAGCAAATCTTGGAGGCTAAAATTGGGAGTGATGCCCTTTTAGCTGT
GATTCCAGATCCAGTGACCTGTTTTTCCACTGCAAGGTATTCTCAGAAAC
AAATCTTCAGAGTGGTTTTGGACTCAAGTTTGGTAATAGTTGATTGGATT
ACCAGTGGGCGCCATGAAAGTGGAGAGAAATGGGATTTTGAACTTTATAG
GAGCACCAACCACATCTTCT
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