CF509900

Overview
NameCF509900
Unique NameCF509900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2262 contig Csv1_Contig2262:116..552. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509900 vs. ExPASy Swiss-Prot
Match: NUD21_ARATH (Nudix hydrolase 21, chloroplastic OS=Arabidopsis thaliana GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.033e-29
Identity = 73/115 (63.48%), Postives = 85/115 (73.91%), Query Frame = 3
Query:   99 PQETIVSLVTPENVVGNLVSRTGRHLQRYQK-GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK 437
            P + IV + TP   V +LVSRTGR LQRY   G RQVVGC+PYRYK           ++EVL+IS+QK GKGML PKGGWEIDESI+EAALRETIEEAGVTG +E E LG+W +K
Sbjct:   27 PSKKIVPVPTPSEKVVSLVSRTGRDLQRYNTAGYRQVVGCVPYRYK------KHGGGEIEVLLISAQKKGKGMLLPKGGWEIDESIEEAALRETIEEAGVTGQLE-ESLGKWQYK 134          
BLAST of CF509900 vs. ExPASy Swiss-Prot
Match: NUDT4_ARATH (Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 5.125e-29
Identity = 67/101 (66.34%), Postives = 83/101 (82.18%), Query Frame = 3
Query:  141 VGNLVSRTGRHLQRYQK-GRRQVVGCIPYRYKCVKQSLD-INEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK 437
            V +LVSRTGR LQRY   G RQVVGC+PYRYK  KQ ++ +  + ++VL++S+QKGKGMLFPKGGWE DES++EAALRETIEEAGVTG +E E LG+W +K
Sbjct:   40 VVSLVSRTGRDLQRYDHAGYRQVVGCVPYRYK--KQEVNGVETQVIQVLLVSAQKGKGMLFPKGGWETDESMEEAALRETIEEAGVTGELE-EKLGKWQYK 137          
BLAST of CF509900 vs. ExPASy Swiss-Prot
Match: NUD18_ARATH (Nudix hydrolase 18, mitochondrial OS=Arabidopsis thaliana GN=NUDT18 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.153e-27
Identity = 63/95 (66.32%), Postives = 76/95 (80.00%), Query Frame = 3
Query:  150 LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF 434
            LVSRTGR  QRY KGRRQVVGCIPYR K +     I++E  EVLVISSQKG  ++FPKGGWE+DES++EAA RE++EEAGV G VE + LG+W+F
Sbjct:    4 LVSRTGRQSQRYNKGRRQVVGCIPYRLK-ISSDGTISDE-FEVLVISSQKGHALMFPKGGWELDESVEEAASRESLEEAGVVGNVERQ-LGKWDF 95          
BLAST of CF509900 vs. ExPASy Swiss-Prot
Match: NUD17_ARATH (Nudix hydrolase 17, mitochondrial OS=Arabidopsis thaliana GN=NUDT17 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.797e-27
Identity = 61/95 (64.21%), Postives = 75/95 (78.95%), Query Frame = 3
Query:  150 LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF 434
            L SRTGR  QRY KGRRQVVGC+PYR+K       I++E +EVLVISSQKG  ++FPKGGWE+DES++EAA RE +EEAGV G VE + LG+W+F
Sbjct:    9 LASRTGRQFQRYNKGRRQVVGCVPYRFKLSNDG-KISDE-VEVLVISSQKGHALMFPKGGWELDESVEEAASRECLEEAGVLGNVEHQ-LGKWDF 100          
BLAST of CF509900 vs. ExPASy Swiss-Prot
Match: NUD16_ARATH (Nudix hydrolase 16, mitochondrial OS=Arabidopsis thaliana GN=NUDT16 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.558e-22
Identity = 55/100 (55.00%), Postives = 70/100 (70.00%), Query Frame = 3
Query:  147 NLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEED---LEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK 437
            +LV+RTGR  QRY+ G R V GCIP+RY  V    D N E    ++VL+ISS  G G+LFPKGGWE DE+++EAA RE +EEAGV GI+  + LG + FK
Sbjct:    3 DLVARTGRLQQRYEDGSRLVAGCIPFRY--VNSDKDGNSESGKVIQVLMISSSSGPGLLFPKGGWENDETVREAAAREAVEEAGVRGIL-MDFLGNYEFK 99          
BLAST of CF509900 vs. ExPASy Swiss-Prot
Match: NUD13_ARATH (Nudix hydrolase 13, mitochondrial OS=Arabidopsis thaliana GN=NUDT13 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.827e-18
Identity = 51/103 (49.51%), Postives = 66/103 (64.08%), Query Frame = 3
Query:  141 VGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQ----SLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK 437
            + NL +RTGR  QRY    R V GCIPYR    ++    S+D  E  L+VL+ISS     ++FPKGGWE DE++ EAA RE +EEAGV GI+  + LG W F+
Sbjct:    1 MSNLSARTGRDHQRYDNNFRLVSGCIPYRLVKDEEEDSTSVDF-ENKLQVLMISSPNRHDLVFPKGGWEDDETVLEAASREAMEEAGVKGILREDPLGVWEFR 102          
BLAST of CF509900 vs. ExPASy Swiss-Prot
Match: NUD12_ARATH (Nudix hydrolase 12, mitochondrial OS=Arabidopsis thaliana GN=NUDT12 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.117e-18
Identity = 53/104 (50.96%), Postives = 61/104 (58.65%), Query Frame = 3
Query:  150 LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEED--------LEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK 437
            L SRTGR  QRY    R V GCIPYR        D  EED        LEVL++SS     ++FPKGGWE DE++ EAA RE IEEAGV GI+    LG W F+
Sbjct:    4 LSSRTGRDRQRYDNNFRLVSGCIPYRL----MKADETEEDSGVDFVNKLEVLMVSSPNRHDLVFPKGGWEDDETVLEAASREAIEEAGVKGILRELPLGVWEFR 103          
The following BLAST results are available for this feature:
BLAST of CF509900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
NUD21_ARATH1.033e-2963.48Nudix hydrolase 21, chloroplastic OS=Arabidopsis t... [more]
NUDT4_ARATH5.125e-2966.34Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4... [more]
NUD18_ARATH2.153e-2766.32Nudix hydrolase 18, mitochondrial OS=Arabidopsis t... [more]
NUD17_ARATH4.797e-2764.21Nudix hydrolase 17, mitochondrial OS=Arabidopsis t... [more]
NUD16_ARATH3.558e-2255.00Nudix hydrolase 16, mitochondrial OS=Arabidopsis t... [more]
NUD13_ARATH1.827e-1849.51Nudix hydrolase 13, mitochondrial OS=Arabidopsis t... [more]
NUD12_ARATH3.117e-1850.96Nudix hydrolase 12, mitochondrial OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-410 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509900 ID=CF509900; Name=CF509900; organism=Citrus sinensis; type=EST; length=438bp
ATTGTTTTTCATCTGAAAGATTGTCTTTCAGCTCCTTTTGTTTTTTGCTG
CTGCGAATATTCCGTAACTAGAGAAGAAAACTATGGTGGCTTTGGTAGCC
TCAAGAAACTATTGTATCTCTTGTAACTCCTGAAAATGTTGTGGGCAATT
TGGTTTCTCGCACCGGCAGGCATTTGCAGCGTTACCAAAAAGGCCGTCGC
CAAGTTGTTGGATGCATACCATATAGATATAAATGCGTAAAACAAAGCTT
GGATATTAATGAGGAGGATCTTGAAGTTCTCGTCATCAGTTCACAGAAAG
GCAAAGGGATGTTGTTCCCAAAGGGAGGCTGGGAAATTGATGAATCCATA
CAAGAAGCAGCTTTACGAGAAACCATCGAGGAAGCCGGGGTAACTGGCAT
CGTTGAGTGTGAATTATTGGGTGAATGGAATTTCAAGA
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