CF509901

Overview
NameCF509901
Unique NameCF509901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509901 vs. ExPASy Swiss-Prot
Match: RH42_ARATH (DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis thaliana GN=RH42 PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 5.823e-37
Identity = 90/191 (47.12%), Postives = 105/191 (54.97%), Query Frame = 3
Query:    3 KALADSFMAKVNQGLEQAHGTGYGGSGFKFNXXXXXXXXXXXXXXXXXYGFXXXXXXXXXXXXGIRKAGG-DISQQDALXXXXXXXXXXXXXXX---MPTPISAAQLLPNAGLPISLPGVLGLSIPGAAPTVSATGLPVVPNDGXXXXXXXXXXINLQHNLAKIQADAMPEHYEAELEINDFPQNARWKVT 563
            KALAD FM KV QG+EQAHGTGYGGSGFKFN                 YGF             +RKAGG +ISQQ A                   +  P++A QLL N G   ++PGVL +++P             +P++G          +NLQHNLAKIQADAMPEHYEAELEINDFPQNARWKVT
Sbjct:  907 KALADGFMVKVKQGIEQAHGTGYGGSGFKFNEEEEEVRKAAKKAQAKEYGFEEDKSDSEDENDVVRKAGGGEISQQQATFAQIAAIAAAAKAAAAAPVSAPVTANQLLANGGGLAAMPGVLPVTVP------------TLPSEGAGRAAAMVAAMNLQHNLAKIQADAMPEHYEAELEINDFPQNARWKVT 1085          
BLAST of CF509901 vs. ExPASy Swiss-Prot
Match: RH45_ARATH (DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis thaliana GN=RH45 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.662e-33
Identity = 84/187 (44.92%), Postives = 94/187 (50.27%), Query Frame = 3
Query:    3 KALADSFMAKVNQGLEQAHGTGYGGSGFKFNXXXXXXXXXXXXXXXXXYGFXXXXXXXXXXXXGIRKAGGDISQQDALXXXXXXXXXXXXXXXMPTPISAAQLLPNAGLPISLPGVLGLSIPGAAPTVSATGLPVVPNDGXXXXXXXXXXINLQHNLAKIQADAMPEHYEAELEINDFPQNARWKVT 563
            KA+A+ FMAKV QG+EQAHGTGYGGSGFKFN                 YGF             +RKAGGDISQQ                     P++A QLLPN G   + PG+                    P DG           N+Q  LAKIQADA+PEHYEAELEINDFPQNARWKVT
Sbjct:  745 KAVAEGFMAKVKQGIEQAHGTGYGGSGFKFNEEEDEVRKAAKKAQAKEYGFEEEKSDSEDENDVVRKAGGDISQQQITLAQIAAIASAASK----APVTANQLLPNGGGLATEPGI-------------------PPTDGAGRVAAMIAAANVQQYLAKIQADAIPEHYEAELEINDFPQNARWKVT 908          
BLAST of CF509901 vs. ExPASy Swiss-Prot
Match: RH45_ORYSJ (DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sativa subsp. japonica GN=Os08g0154200 PE=3 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 7.888e-26
Identity = 73/191 (38.22%), Postives = 92/191 (48.17%), Query Frame = 3
Query:    3 KALADSFMAKVNQGLEQAHGTGYGGSGFKFNXXXXXXXXXXXXXXXXXYGFXXXXXXXXXXXXG-IRKAGGDISQQDALXXXXXXXXXXXXXXXMPTPISAAQLLPNAGLPI---SLPGVLGLSIPGAAPTVSATGLPVVPNDGXXXXXXXXXXINLQHNLAKIQADAMPEHYEAELEINDFPQNARWKVT 563
            K LAD FMAKV QG EQAHGTGYGGSGFKFN                 YG+            G +RKAGGD++ Q                      ++AA+   NA   +   +   +L + +   AP   AT   +               +N+Q NLA+IQA  +PEHYE EL+INDFPQNARWK+T
Sbjct:  644 KGLADRFMAKVKQGTEQAHGTGYGGSGFKFNEEEDEARRSAKKAQAREYGYEEDKSDSDSDEEGGVRKAGGDLAAQ------------AIAAAQAAATLAAAKAASNANQQVQSTNAGSLLSIPVVANAPNNEATARAL------------QAALNIQQNLARIQAHVVPEHYEVELDINDFPQNARWKIT 810          
BLAST of CF509901 vs. ExPASy Swiss-Prot
Match: RH42_ORYSJ (DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sativa subsp. japonica GN=Os08g0159900 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.757e-25
Identity = 75/188 (39.89%), Postives = 88/188 (46.81%), Query Frame = 3
Query:    3 KALADSFMAKVNQGLEQAHGTGYGGSGFKFNXXXXXXXXXXXXXXXXXYGFXXXXXXXXXXXXG-IRKAGGDISQQDALXXXXXXXXXXXXXXXMPTPISAAQLLPNAGLPISLPGVLGLSIPGAAPTVSATGLPVVPNDGXXXXXXXXXXINLQHNLAKIQADAMPEHYEAELEINDFPQNARWKVT 563
            K LAD FMAKV QG EQAHGTGYGGSGFKFN                 YG+            G +RKAGGD++ Q                      + AA+   NA          G S+    P   A+       +            N+Q NLA+IQA A+PEHYEAELEINDFPQNARWK+T
Sbjct:  802 KGLADRFMAKVKQGTEQAHGTGYGGSGFKFNEEEDEARKSAKKAQAREYGYEEDKSDSDSDEEGGVRKAGGDLAAQ------------AIAAAQAAAAMVAAKAASNANQQTQ-----GTSVGPLLPLAIASNT----QNNEATARALQAAFNIQQNLARIQAHAVPEHYEAELEINDFPQNARWKIT 968          
The following BLAST results are available for this feature:
BLAST of CF509901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RH42_ARATH5.823e-3747.12DEAD-box ATP-dependent RNA helicase 42 OS=Arabidop... [more]
RH45_ARATH6.662e-3344.92DEAD-box ATP-dependent RNA helicase 45 OS=Arabidop... [more]
RH45_ORYSJ7.888e-2638.22DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sa... [more]
RH42_ORYSJ1.757e-2539.89DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sa... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-411 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509901 ID=CF509901; Name=CF509901; organism=Citrus sinensis; type=EST; length=565bp
TGAAAGCTCTTGCTGATAGTTTCATGGCTAAAGTGAATCAGGGGCTTGAG
CAAGCCCATGGAACTGGTTATGGTGGAAGTGGTTTTAAATTTAATGAAGA
GGAAGATGAGAAGAGGAAAGCAGCGAAGAAAGCTCAGGCAAAAGAATATG
GCTTTGAGGAAGACAAGTCAGATTCTGATGATGAAGATGAAGGAATCAGG
AAGGCAGGTGGTGACATCTCACAGCAAGATGCCCTTGCTAAGATCTCAGC
TATTGCTGCTGCCTCCAAGGCGTCAGCTTCAATGCCAACTCCTATTTCTG
CCGCTCAACTGCTTCCAAATGCTGGACTACCTATTTCTCTGCCTGGTGTA
CTTGGCCTATCAATTCCTGGAGCAGCACCAACTGTCTCTGCAACCGGGCT
GCCTGTGGTACCAAATGATGGGGCAGCTCGGGCGGCAGCATTAGCAGCTG
CCATTAACTTGCAGCATAATCTGGCAAAGATTCAAGCTGATGCAATGCCC
GAACATTATGAAGCAGAATTGGAGATTAATGATTTTCCACAGAATGCTCG
ATGGAAGGTTACGCA
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