CF509901
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF509901 vs. ExPASy Swiss-Prot
Match: RH42_ARATH (DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis thaliana GN=RH42 PE=1 SV=2) HSP 1 Score: 153.68 bits (387), Expect = 5.823e-37 Identity = 90/191 (47.12%), Postives = 105/191 (54.97%), Query Frame = 3 Query: 3 KALADSFMAKVNQGLEQAHGTGYGGSGFKFNXXXXXXXXXXXXXXXXXYGFXXXXXXXXXXXXGIRKAGG-DISQQDALXXXXXXXXXXXXXXX---MPTPISAAQLLPNAGLPISLPGVLGLSIPGAAPTVSATGLPVVPNDGXXXXXXXXXXINLQHNLAKIQADAMPEHYEAELEINDFPQNARWKVT 563 KALAD FM KV QG+EQAHGTGYGGSGFKFN YGF +RKAGG +ISQQ A + P++A QLL N G ++PGVL +++P +P++G +NLQHNLAKIQADAMPEHYEAELEINDFPQNARWKVT Sbjct: 907 KALADGFMVKVKQGIEQAHGTGYGGSGFKFNEEEEEVRKAAKKAQAKEYGFEEDKSDSEDENDVVRKAGGGEISQQQATFAQIAAIAAAAKAAAAAPVSAPVTANQLLANGGGLAAMPGVLPVTVP------------TLPSEGAGRAAAMVAAMNLQHNLAKIQADAMPEHYEAELEINDFPQNARWKVT 1085
BLAST of CF509901 vs. ExPASy Swiss-Prot
Match: RH45_ARATH (DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis thaliana GN=RH45 PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 6.662e-33 Identity = 84/187 (44.92%), Postives = 94/187 (50.27%), Query Frame = 3 Query: 3 KALADSFMAKVNQGLEQAHGTGYGGSGFKFNXXXXXXXXXXXXXXXXXYGFXXXXXXXXXXXXGIRKAGGDISQQDALXXXXXXXXXXXXXXXMPTPISAAQLLPNAGLPISLPGVLGLSIPGAAPTVSATGLPVVPNDGXXXXXXXXXXINLQHNLAKIQADAMPEHYEAELEINDFPQNARWKVT 563 KA+A+ FMAKV QG+EQAHGTGYGGSGFKFN YGF +RKAGGDISQQ P++A QLLPN G + PG+ P DG N+Q LAKIQADA+PEHYEAELEINDFPQNARWKVT Sbjct: 745 KAVAEGFMAKVKQGIEQAHGTGYGGSGFKFNEEEDEVRKAAKKAQAKEYGFEEEKSDSEDENDVVRKAGGDISQQQITLAQIAAIASAASK----APVTANQLLPNGGGLATEPGI-------------------PPTDGAGRVAAMIAAANVQQYLAKIQADAIPEHYEAELEINDFPQNARWKVT 908
BLAST of CF509901 vs. ExPASy Swiss-Prot
Match: RH45_ORYSJ (DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sativa subsp. japonica GN=Os08g0154200 PE=3 SV=2) HSP 1 Score: 116.701 bits (291), Expect = 7.888e-26 Identity = 73/191 (38.22%), Postives = 92/191 (48.17%), Query Frame = 3 Query: 3 KALADSFMAKVNQGLEQAHGTGYGGSGFKFNXXXXXXXXXXXXXXXXXYGFXXXXXXXXXXXXG-IRKAGGDISQQDALXXXXXXXXXXXXXXXMPTPISAAQLLPNAGLPI---SLPGVLGLSIPGAAPTVSATGLPVVPNDGXXXXXXXXXXINLQHNLAKIQADAMPEHYEAELEINDFPQNARWKVT 563 K LAD FMAKV QG EQAHGTGYGGSGFKFN YG+ G +RKAGGD++ Q ++AA+ NA + + +L + + AP AT + +N+Q NLA+IQA +PEHYE EL+INDFPQNARWK+T Sbjct: 644 KGLADRFMAKVKQGTEQAHGTGYGGSGFKFNEEEDEARRSAKKAQAREYGYEEDKSDSDSDEEGGVRKAGGDLAAQ------------AIAAAQAAATLAAAKAASNANQQVQSTNAGSLLSIPVVANAPNNEATARAL------------QAALNIQQNLARIQAHVVPEHYEVELDINDFPQNARWKIT 810
BLAST of CF509901 vs. ExPASy Swiss-Prot
Match: RH42_ORYSJ (DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sativa subsp. japonica GN=Os08g0159900 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 1.757e-25 Identity = 75/188 (39.89%), Postives = 88/188 (46.81%), Query Frame = 3 Query: 3 KALADSFMAKVNQGLEQAHGTGYGGSGFKFNXXXXXXXXXXXXXXXXXYGFXXXXXXXXXXXXG-IRKAGGDISQQDALXXXXXXXXXXXXXXXMPTPISAAQLLPNAGLPISLPGVLGLSIPGAAPTVSATGLPVVPNDGXXXXXXXXXXINLQHNLAKIQADAMPEHYEAELEINDFPQNARWKVT 563 K LAD FMAKV QG EQAHGTGYGGSGFKFN YG+ G +RKAGGD++ Q + AA+ NA G S+ P A+ + N+Q NLA+IQA A+PEHYEAELEINDFPQNARWK+T Sbjct: 802 KGLADRFMAKVKQGTEQAHGTGYGGSGFKFNEEEDEARKSAKKAQAREYGYEEDKSDSDSDEEGGVRKAGGDLAAQ------------AIAAAQAAAAMVAAKAASNANQQTQ-----GTSVGPLLPLAIASNT----QNNEATARALQAAFNIQQNLARIQAHAVPEHYEAELEINDFPQNARWKIT 968 The following BLAST results are available for this feature:
BLAST of CF509901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF509901 ID=CF509901; Name=CF509901; organism=Citrus sinensis; type=EST; length=565bpback to top |