CF509906 | Citrus Genome Database

Overview


Name	CF509906
Unique Name	CF509906
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	600

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CF509906_ssr8	microsatellite	CF509906_ssr8:8..19.	BLAST: Citrus ESTs to Populus V2 proteins
Csv1_Contig12078	contig	Csv1_Contig12078:47..647.	BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins

Homology

[Close]

BLAST of CF509906 vs. ExPASy Swiss-Prot
Match: AB6I_ARATH (ABC transporter I family member 6, chloroplastic OS=Arabidopsis thaliana GN=ABCI6 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.585e-41
Identity = 83/136 (61.03%), Postives = 101/136 (74.26%), Query Frame = 2

Query:  140 TLPALPLLCR-RSNYHRHHL---SLNRVTAALSAVDSPLKSSS--EGQDEKSQ-PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 526
            T P+  LLC  R+N     +   +   V  + S+V S + S S  E +D+  + PLL+V  L AVIAES+QEILKGVNL+V EGEVHA+MGKNGSGKST SKVLVGHPDYEVT GS+VFKG+NLL+MEPE+RSLAG
Sbjct:   36 TSPSRVLLCNLRANSAAAPILRTTRRSVIVSASSVSSAVDSDSLVEDRDDVGRIPLLEVRDLRAVIAESRQEILKGVNLVVYEGEVHAVMGKNGSGKSTFSKVLVGHPDYEVTGGSIVFKGQNLLDMEPEDRSLAG 171

HSP 2 Score: 46.9802 bits (110), Expect = 1.585e-41
Identity = 20/24 (83.33%), Postives = 24/24 (100.00%), Query Frame = 1

Query:  529 FMSFQSPVEIPGVNNIDFLHMAYN 600
            FMSFQSPVEIPGV+N+DFL+MA+N
Sbjct:  173 FMSFQSPVEIPGVSNMDFLNMAFN 196

[Close]

BLAST of CF509906 vs. ExPASy Swiss-Prot
Match: Y075_SYNY3 (Probable ATP-dependent transporter slr0075 OS=Synechocystis sp. (strain PCC 6803) GN=slr0075 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.285e-28
Identity = 49/84 (58.33%), Postives = 65/84 (77.38%), Query Frame = 2

Query:  275 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 526
            SQ +L +  LTA +     +ILKGVNL +  GEVHAIMG+NGSGKSTLSKV+ GHPDYE+T G ++++G++L  +EP ER+LAG
Sbjct:    2 SQTILSIKNLTASV--DGNQILKGVNLEIKAGEVHAIMGRNGSGKSTLSKVITGHPDYEITGGEIIYQGQDLSALEPHERALAG 83

HSP 2 Score: 41.2022 bits (95), Expect = 3.285e-28
Identity = 16/24 (66.67%), Postives = 22/24 (91.67%), Query Frame = 1

Query:  529 FMSFQSPVEIPGVNNIDFLHMAYN 600
            F++FQ P+EIPGV+N+DFL +AYN
Sbjct:   85 FLAFQYPLEIPGVSNLDFLRIAYN 108

[Close]

BLAST of CF509906 vs. ExPASy Swiss-Prot
Match: ABCX_CYAPA (Probable ATP-dependent transporter ycf16 OS=Cyanophora paradoxa GN=ycf16 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.599e-27
Identity = 50/81 (61.73%), Postives = 63/81 (77.78%), Query Frame = 2

Query:  284 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 526
            +L+V  L A +  +  EILKGVNL +N GE+HAIMG NGSGKST SK+L GHP Y+VT G ++FK +NLLE+EPEER+ AG
Sbjct:    8 ILEVKNLKAQVDGT--EILKGVNLTINSGEIHAIMGPNGSGKSTFSKILAGHPAYQVTGGEILFKNKNLLELEPEERARAG 86

HSP 2 Score: 40.0466 bits (92), Expect = 1.599e-27
Identity = 16/24 (66.67%), Postives = 21/24 (87.50%), Query Frame = 1

Query:  529 FMSFQSPVEIPGVNNIDFLHMAYN 600
            F++FQ P+EI GV+NIDFL +AYN
Sbjct:   88 FLAFQYPIEIAGVSNIDFLRLAYN 111

[Close]

BLAST of CF509906 vs. ExPASy Swiss-Prot
Match: ABCX_ODOSI (Probable ATP-dependent transporter ycf16 OS=Odontella sinensis GN=ycf16 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.842e-25
Identity = 45/82 (54.88%), Postives = 61/82 (74.39%), Query Frame = 2

Query:  281 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 526
            P+L++  L A I E+  EILK +NL +++GE+HAIMG NGSGKST SKVL GHP Y +  G ++FKG ++L ++PEERS  G
Sbjct:    6 PILEIKNLKACINEN--EILKDLNLKIHKGEIHAIMGPNGSGKSTFSKVLAGHPAYNILSGDILFKGSSILNLDPEERSHMG 85

HSP 2 Score: 40.4318 bits (93), Expect = 1.842e-25
Identity = 16/24 (66.67%), Postives = 21/24 (87.50%), Query Frame = 1

Query:  529 FMSFQSPVEIPGVNNIDFLHMAYN 600
            F++FQ P+EIPGV+N DFL +AYN
Sbjct:   87 FLAFQYPIEIPGVSNEDFLRLAYN 110

[Close]

BLAST of CF509906 vs. ExPASy Swiss-Prot
Match: ABCX_GUITH (Probable ATP-dependent transporter ycf16 OS=Guillardia theta GN=ycf16 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 6.879e-25
Identity = 43/81 (53.09%), Postives = 62/81 (76.54%), Query Frame = 2

Query:  284 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 526
            +L+VT L A + E K  I+KG+NL+VN GE+HAIMGKNGSGKST +K++ GHPDY +T G + ++  ++LE+ PE+R+  G
Sbjct:    5 ILEVTNLHAAVNEIK--IVKGLNLVVNAGEIHAIMGKNGSGKSTFAKIIAGHPDYTITNGDITYQHTSILELTPEDRAKRG 83

HSP 2 Score: 38.5058 bits (88), Expect = 6.879e-25
Identity = 16/24 (66.67%), Postives = 19/24 (79.17%), Query Frame = 1

Query:  529 FMSFQSPVEIPGVNNIDFLHMAYN 600
            F+SFQ P+EIPGV N DFL +A N
Sbjct:   85 FLSFQYPIEIPGVTNADFLRLACN 108

[Close]

BLAST of CF509906 vs. ExPASy Swiss-Prot
Match: ABCX_PORYE (Probable ATP-dependent transporter ycf16 OS=Porphyra yezoensis GN=ycf16 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 8.955e-25
Identity = 46/84 (54.76%), Postives = 63/84 (75.00%), Query Frame = 2

Query:  275 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 526
            SQ +L++  L A + E+   ILKGVNL +  GE+HAIMG NGSGKSTLSKV+ GHP Y +  G ++F G+++LE+EP+ER+ AG
Sbjct:    2 SQTILEIKDLYASVGETT--ILKGVNLSIRAGEIHAIMGPNGSGKSTLSKVIAGHPAYSLISGDILFFGQSILEIEPDERAKAG 83

HSP 2 Score: 37.7354 bits (86), Expect = 8.955e-25
Identity = 16/24 (66.67%), Postives = 20/24 (83.33%), Query Frame = 1

Query:  529 FMSFQSPVEIPGVNNIDFLHMAYN 600
            F++FQ PVEIPGV+N DFL +A N
Sbjct:   85 FLAFQYPVEIPGVSNSDFLRIALN 108

[Close]

BLAST of CF509906 vs. ExPASy Swiss-Prot
Match: ABCX_GALSU (Probable ATP-dependent transporter ycf16 OS=Galdieria sulphuraria GN=ycf16 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.568e-24
Identity = 43/85 (50.59%), Postives = 61/85 (71.76%), Query Frame = 2

Query:  272 KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 526
            K + LLQ+  L   +A +++ IL G+NL VN+GE+HAIMG NGSGKSTLSKV+ GH  Y+V +G ++F+ +NLL    E+R+  G
Sbjct:    2 KHKSLLQIKNLHVKLANTEEYILNGINLNVNQGEIHAIMGPNGSGKSTLSKVIAGHSLYKVVKGEIIFQDQNLLNYTIEDRANLG 86

HSP 2 Score: 41.2022 bits (95), Expect = 2.568e-24
Identity = 17/24 (70.83%), Postives = 21/24 (87.50%), Query Frame = 1

Query:  529 FMSFQSPVEIPGVNNIDFLHMAYN 600
            F++FQ P+EI GVNNIDFL +AYN
Sbjct:   88 FLAFQYPLEIAGVNNIDFLRLAYN 111

[Close]

BLAST of CF509906 vs. ExPASy Swiss-Prot
Match: ABCX_ANTSP (Probable ATP-dependent transporter ycf16 OS=Antithamnion sp. GN=ycf16 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.662e-24
Identity = 41/81 (50.62%), Postives = 59/81 (72.84%), Query Frame = 2

Query:  284 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 526
            LL +  L   I E+  +IL  +NL +  GE+HAIMGKNGSGKSTL+KV+ GHP Y++T G ++F+ +++ E+EPE+RS  G
Sbjct:    6 LLNIKNLDVTIGET--QILNSLNLSIKPGEIHAIMGKNGSGKSTLAKVIAGHPSYKITNGQILFENQDVTEIEPEDRSHLG 84

HSP 2 Score: 40.817 bits (94), Expect = 5.662e-24
Identity = 17/24 (70.83%), Postives = 20/24 (83.33%), Query Frame = 1

Query:  529 FMSFQSPVEIPGVNNIDFLHMAYN 600
            F++FQ PVEIPGV N DFL +AYN
Sbjct:   86 FLAFQYPVEIPGVTNADFLRIAYN 109

[Close]

BLAST of CF509906 vs. ExPASy Swiss-Prot
Match: ABCX_PORPU (Probable ATP-dependent transporter ycf16 OS=Porphyra purpurea GN=ycf16 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.656e-23
Identity = 44/84 (52.38%), Postives = 60/84 (71.43%), Query Frame = 2

Query:  275 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 526
            S  +L++  L A + +    ILKGVNL +  GE+HAIMG NGSGKSTLSKV+ GHP Y +  G ++F G ++L+MEP+ER+ AG
Sbjct:    2 SDYILEIKDLHASVNDVP--ILKGVNLSIKPGEIHAIMGPNGSGKSTLSKVIAGHPAYSLLNGDILFYGRSILKMEPDERARAG 83

HSP 2 Score: 38.1206 bits (87), Expect = 4.656e-23
Identity = 16/24 (66.67%), Postives = 20/24 (83.33%), Query Frame = 1

Query:  529 FMSFQSPVEIPGVNNIDFLHMAYN 600
            F++FQ PVEIPGV+N DFL +A N
Sbjct:   85 FLAFQYPVEIPGVSNADFLRIALN 108

[Close]

BLAST of CF509906 vs. ExPASy Swiss-Prot
Match: SUFC_ECOLI (Probable ATP-dependent transporter sufC OS=Escherichia coli (strain K12) GN=sufC PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.109e-19
Identity = 40/71 (56.34%), Postives = 53/71 (74.65%), Query Frame = 2

Query:  314 IAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 526
            ++   + IL+G++L V+ GEVHAIMG NGSGKSTLS  L G  DYEVT G+V FKG++LL + PE+R+  G
Sbjct:    9 VSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEG 79

HSP 2 Score: 34.2686 bits (77), Expect = 2.109e-19
Identity = 16/24 (66.67%), Postives = 18/24 (75.00%), Query Frame = 1

Query:  529 FMSFQSPVEIPGVNNIDFLHMAYN 600
            FM+FQ PVEIPGV+N  FL  A N
Sbjct:   81 FMAFQYPVEIPGVSNQFFLQTALN 104

The following BLAST results are available for this feature:

BLAST of CF509906 vs. ExPASy Swiss-Prot

BLAST of CF509906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17


Match Name	E-value	Identity	Description
AB6I_ARATH	1.585e-41	61.03	ABC transporter I family member 6, chloroplastic O...	[more]
Y075_SYNY3	3.285e-28	58.33	Probable ATP-dependent transporter slr0075 OS=Syne...	[more]
ABCX_CYAPA	1.599e-27	61.73	Probable ATP-dependent transporter ycf16 OS=Cyanop...	[more]
ABCX_ODOSI	1.842e-25	54.88	Probable ATP-dependent transporter ycf16 OS=Odonte...	[more]
ABCX_GUITH	6.879e-25	53.09	Probable ATP-dependent transporter ycf16 OS=Guilla...	[more]
ABCX_PORYE	8.955e-25	54.76	Probable ATP-dependent transporter ycf16 OS=Porphy...	[more]
ABCX_GALSU	2.568e-24	50.59	Probable ATP-dependent transporter ycf16 OS=Galdie...	[more]
ABCX_ANTSP	5.662e-24	50.62	Probable ATP-dependent transporter ycf16 OS=Antith...	[more]
ABCX_PORPU	4.656e-23	52.38	Probable ATP-dependent transporter ycf16 OS=Porphy...	[more]
SUFC_ECOLI	2.109e-19	56.34	Probable ATP-dependent transporter sufC OS=Escheri...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_125000-416 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_G12 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF509906 ID=CF509906; Name=CF509906; organism=Citrus sinensis; type=EST; length=600bp
CTATATATGTGTGTGTGTGTATGCGAGCGCAGCAAACTGTTGACTGCCTA
ACTGCCGTGCTGTGATGGCTGCATTTCTACCCAGCACCTCTTGTTGTTCA
TTCAAATTCTCAAATTTACCCTCTAAATCTCACGTGTTTACTCTTCCCGC
CCTTCCCCTTCTCTGTCGCCGGTCAAACTACCATCGTCACCATCTATCTC
TCAACCGCGTAACAGCCGCCCTCTCCGCCGTCGATTCCCCTTTGAAATCT
TCCTCCGAGGGTCAGGATGAGAAAAGCCAGCCTCTGCTTCAAGTCACAGG
CTTAACGGCCGTGATCGCAGAGTCCAAGCAGGAAATTCTCAAGGGCGTCA
ATCTCTTGGTCAACGAAGGAGAGGTTCATGCGATCATGGGAAAGAACGGT
TCTGGGAAGAGTACTCTTTCAAAGGTTCTGGTTGGGCATCCGGATTATGA
AGTGACAGAAGGGAGTGTCGTGTTTAAAGGGGAGAATCTTCTAGAAATGG
AGCCAGAAGAACGCTCACTTGCTGGCCTTTTATGAGTTTCCAGTCTCCAG
TTGAGATCCCGGGAGTCAACAATATTGACTTCCTTCACATGGCTTATAAT