CF509908

Overview
NameCF509908
Unique NameCF509908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2262 contig Csv1_Contig2262:163..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509908 vs. ExPASy Swiss-Prot
Match: NUD17_ARATH (Nudix hydrolase 17, mitochondrial OS=Arabidopsis thaliana GN=NUDT17 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.329e-51
Identity = 101/173 (58.38%), Postives = 129/173 (74.57%), Query Frame = 3
Query:  102 LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKEDSVGTCSL 620
            L SRTGR  QRY KGRRQVVGC+PYR+K       I++E +EVLVISSQKG  ++FPKGGWE+DES++EAA RE +EEAGV G VE +L G+W+F S++  T Y+G MFP+LV +QL  WPE++VR R WM+V EAR+ C+ WWMKEALD LV RL+S     KE+   + S+
Sbjct:    9 LASRTGRQFQRYNKGRRQVVGCVPYRFKLSNDG-KISDE-VEVLVISSQKGHALMFPKGGWELDESVEEAASRECLEEAGVLGNVEHQL-GKWDFLSKSRGTYYEGLMFPMLVTEQLELWPEQHVRQRIWMNVTEAREACRDWWMKEALDVLVERLSSPMNQPKEEKTMSISI 178          
BLAST of CF509908 vs. ExPASy Swiss-Prot
Match: NUD18_ARATH (Nudix hydrolase 18, mitochondrial OS=Arabidopsis thaliana GN=NUDT18 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.393e-50
Identity = 99/166 (59.64%), Postives = 126/166 (75.90%), Query Frame = 3
Query:  102 LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKED 599
            LVSRTGR  QRY KGRRQVVGCIPYR K +     I++E  EVLVISSQKG  ++FPKGGWE+DES++EAA RE++EEAGV G VE +L G+W+F S++  T Y+G+MFP+LV+++L  WPE+++R R WM V EAR  C+ WWMKEALD LV RL+   L   E+
Sbjct:    4 LVSRTGRQSQRYNKGRRQVVGCIPYRLK-ISSDGTISDE-FEVLVISSQKGHALMFPKGGWELDESVEEAASRESLEEAGVVGNVERQL-GKWDFLSKSKGTFYEGFMFPMLVKEELELWPEQHLRQRIWMKVDEARDACRDWWMKEALDVLVQRLSLLSLKPMEE 166          
BLAST of CF509908 vs. ExPASy Swiss-Prot
Match: NUDT4_ARATH (Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.847e-49
Identity = 95/158 (60.13%), Postives = 124/158 (78.48%), Query Frame = 3
Query:   93 VGNLVSRTGRHLQRYQK-GRRQVVGCIPYRYKCVKQSLD-INEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV 560
            V +LVSRTGR LQRY   G RQVVGC+PYRYK  KQ ++ +  + ++VL++S+QKGKGMLFPKGGWE DES++EAALRETIEEAGVTG +E E LG+W +KS+ H+  + GYMF LLV  +   WPE  +R R+W+S+ EAR+VCQ+WWM+EAL+  +
Sbjct:   40 VVSLVSRTGRDLQRYDHAGYRQVVGCVPYRYK--KQEVNGVETQVIQVLLVSAQKGKGMLFPKGGWETDESMEEAALRETIEEAGVTGELE-EKLGKWQYKSKRHSIIHDGYMFALLVSQEFERWPEAEMRQRRWVSLDEAREVCQNWWMREALEAFI 194          
BLAST of CF509908 vs. ExPASy Swiss-Prot
Match: NUD21_ARATH (Nudix hydrolase 21, chloroplastic OS=Arabidopsis thaliana GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 9.159e-48
Identity = 101/180 (56.11%), Postives = 126/180 (70.00%), Query Frame = 3
Query:   48 VAQETIVSLVTPENVVGNLVSRTGRHLQRYQK-GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQ 581
            +  + IV + TP   V +LVSRTGR LQRY   G RQVVGC+PYRYK           ++EVL+IS+QK GKGML PKGGWEIDESI+EAALRETIEEAGVTG +E E LG+W +KS+ H   + G+MFPLLV  Q   WPE   R RKW+S++EA ++CQ+ WM+EAL+  + R    Q
Sbjct:   26 IPSKKIVPVPTPSEKVVSLVSRTGRDLQRYNTAGYRQVVGCVPYRYK------KHGGGEIEVLLISAQKKGKGMLLPKGGWEIDESIEEAALRETIEEAGVTGQLE-ESLGKWQYKSKRHTMIHDGHMFPLLVSQQFEIWPESEFRQRKWVSLSEAIELCQNSWMREALEAFINRKCQTQ 198          
BLAST of CF509908 vs. ExPASy Swiss-Prot
Match: NUD16_ARATH (Nudix hydrolase 16, mitochondrial OS=Arabidopsis thaliana GN=NUDT16 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.570e-37
Identity = 78/159 (49.06%), Postives = 109/159 (68.55%), Query Frame = 3
Query:   99 NLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEED---LEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDY------QGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEAL 548
            +LV+RTGR  QRY+ G R V GCIP+RY  V    D N E    ++VL+ISS  G G+LFPKGGWE DE+++EAA RE +EEAGV GI+  + LG + FKS++H  ++      +  M+ L V+++LA WPE   R+RKW+++ EA + C+H WMK+AL
Sbjct:    3 DLVARTGRLQQRYEDGSRLVAGCIPFRY--VNSDKDGNSESGKVIQVLMISSSSGPGLLFPKGGWENDETVREAAAREAVEEAGVRGIL-MDFLGNYEFKSKSHQDEFSPEGLCKAAMYALYVKEELATWPEHETRTRKWLTIEEAVESCRHPWMKDAL 158          
BLAST of CF509908 vs. ExPASy Swiss-Prot
Match: NUD13_ARATH (Nudix hydrolase 13, mitochondrial OS=Arabidopsis thaliana GN=NUDT13 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.809e-35
Identity = 81/189 (42.86%), Postives = 122/189 (64.55%), Query Frame = 3
Query:   93 VGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQ----SLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTD--------YQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKEDSVGTCSLS 623
            + NL +RTGR  QRY    R V GCIPYR    ++    S+D  E  L+VL+ISS     ++FPKGGWE DE++ EAA RE +EEAGV GI+  + LG W F+S++ + +         +GYMF L V+++LA WPE++ R R+W++V EA ++C++ WM+ AL+   +R+ +++   KEDS+   S+S
Sbjct:    1 MSNLSARTGRDHQRYDNNFRLVSGCIPYRLVKDEEEDSTSVDF-ENKLQVLMISSPNRHDLVFPKGGWEDDETVLEAASREAMEEAGVKGILREDPLGVWEFRSKSSSVEADCCLGGGCKGYMFALEVKEELAIWPEQDDRERRWLNVKEALELCRYEWMQSALEEF-LRVMAEEGSTKEDSLAISSIS 187          
BLAST of CF509908 vs. ExPASy Swiss-Prot
Match: NUD12_ARATH (Nudix hydrolase 12, mitochondrial OS=Arabidopsis thaliana GN=NUDT12 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.420e-32
Identity = 78/183 (42.62%), Postives = 110/183 (60.11%), Query Frame = 3
Query:  102 LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEED--------LEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTD------YQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQ-QLHGKEDSV 605
            L SRTGR  QRY    R V GCIPYR        D  EED        LEVL++SS     ++FPKGGWE DE++ EAA RE IEEAGV GI+    LG W F+S++   +       +GYMF L V ++L +WPE+  R R+W++V EA ++C++ WM+ AL+  +  +  + +L  +E++V
Sbjct:    4 LSSRTGRDRQRYDNNFRLVSGCIPYRL----MKADETEEDSGVDFVNKLEVLMVSSPNRHDLVFPKGGWEDDETVLEAASREAIEEAGVKGILRELPLGVWEFRSKSSTVEDECLGGCKGYMFALKVTEELEDWPERKNRERRWLTVKEALELCRYEWMQRALEEFLRVMEDERRLRTEEETV 182          
The following BLAST results are available for this feature:
BLAST of CF509908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
NUD17_ARATH2.329e-5158.38Nudix hydrolase 17, mitochondrial OS=Arabidopsis t... [more]
NUD18_ARATH4.393e-5059.64Nudix hydrolase 18, mitochondrial OS=Arabidopsis t... [more]
NUDT4_ARATH2.847e-4960.13Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4... [more]
NUD21_ARATH9.159e-4856.11Nudix hydrolase 21, chloroplastic OS=Arabidopsis t... [more]
NUD16_ARATH5.570e-3749.06Nudix hydrolase 16, mitochondrial OS=Arabidopsis t... [more]
NUD13_ARATH6.809e-3542.86Nudix hydrolase 13, mitochondrial OS=Arabidopsis t... [more]
NUD12_ARATH1.420e-3242.62Nudix hydrolase 12, mitochondrial OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-418 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509908 ID=CF509908; Name=CF509908; organism=Citrus sinensis; type=EST; length=629bp
CTGCTGCGAATATTCCGTAACTAGAGAAGAAAACTATGGTGGCTTTGGTA
GCTCAAGAAACTATTGTATCTCTTGTAACTCCTGAAAATGTTGTGGGCAA
TTTGGTTTCTCGCACCGGCAGGCATTTGCAGCGTTACCAAAAAGGCCGTC
GCCAAGTTGTTGGATGCATACCATATAGATATAAATGCGTAAAACAAAGC
TTGGATATTAATGAGGAGGATCTTGAAGTTCTCGTCATCAGTTCACAGAA
AGGCAAAGGGATGTTGTTCCCAAAGGGAGGCTGGGAAATTGATGAATCCA
TACAAGAAGCAGCTTTACGAGAAACCATCGAGGAAGCCGGGGTAACTGGC
ATCGTTGAGTGTGAATTATTGGGTGAATGGAATTTCAAGAGCAGAGCACA
CAACACTGACTATCAAGGATACATGTTCCCATTACTTGTTCAGGATCAAT
TAGCGGAGTGGCCAGAGAAGAATGTGCGAAGCAGAAAATGGATGAGCGTG
GCAGAAGCTAGAAAAGTTTGTCAGCATTGGTGGATGAAGGAAGCATTGGA
TAGACTAGTAATGCGTCTAACTTCTCAACAACTACATGGCAAGGAAGATT
CTGTAGGAACCTGTTCTTTGAGCTAGAAT
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