CF509916

Overview
NameCF509916
Unique NameCF509916
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10712 contig Csv1_Contig10712:145..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF509916 vs. ExPASy Swiss-Prot
Match: IAA9_ARATH (Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19
Identity = 59/132 (44.70%), Postives = 75/132 (56.82%), Query Frame = 3 
Query:  195 EKRGPGNVNLLASPASMGSVCQKS-SVIKERNYMGLXXXXXXXXXXXXXXXXXXXXXXLNLKATELRLGLPGSQSPERGSELCLLGPAQLGEKPLFPLHPTNDS-HYPSQKNVVSGNKRGFSDAMDGFSEGK 584
            E+    NV++ +S  +   + + +   +KE NY+GL                      ++LKATEL LGLPGSQSP R +EL LL PA+L EKP FPL P+ D     SQKN  SGNKRGFSD MD F+E K
Sbjct:    4 EEELQSNVSVASSSPTSNCISRNTLGGLKEHNYLGLSDCSSVGSSTLSPLAEDDKAT-ISLKATELTLGLPGSQSPARDTELNLLSPAKLDEKPFFPLLPSKDEICSSSQKNNASGNKRGFSDTMDQFAEAK 134
[Close]
BLAST of CF509916 vs. ExPASy Swiss-Prot
Match: IAA8_ARATH (Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.196e-16
Identity = 53/106 (50.00%), Postives = 59/106 (55.66%), Query Frame = 3 
Query:  264 SSVIKERNYMGLXXXXXXXXXXXXXXXXXXXXXXLNLKATELRLGLPGSQSPERGSELCLLGPAQLGEKPLFPLHPTND--SHYPSQKNVVSGNKRGFSDAMDGFS 575
            S  +KERNY+GL                      LN KATELRLGLP SQSPER ++  LL P    EK LFPL P+ D  S     KNVVSGNKRGF+D  D FS
Sbjct:   16 SPCLKERNYLGLSDCSSVDSSTIPNVVGKSN---LNFKATELRLGLPESQSPERETDFGLLSPRTPDEKLLFPLLPSKDNGSATTGHKNVVSGNKRGFADTWDEFS 118
The following BLAST results are available for this feature:
BLAST of CF509916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
IAA9_ARATH3.845e-1944.70Auxin-responsive protein IAA9 OS=Arabidopsis thali... [more]
IAA8_ARATH5.196e-1650.00Auxin-responsive protein IAA8 OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-426 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509916 ID=CF509916; Name=CF509916; organism=Citrus sinensis; type=EST; length=618bp
CTTTTGTTGCTCTGTGCCAAATGGAGGGTCCTTAGCTCTTTCTCTCTCTT
TCTCTTCTCTCTCAAGTCTGAAGTCTCAGCTTTGCAAATCTTCTACTTCT
TCTCCGGCAAGTGATCAACAAAACCAACCAGGTTGTACGGAATTAAAGTA
TCAGATTTTAGATTTTGATGTCTCCACCACCTGCTGTTGGTGAGGAGAAG
AGGGGTCCTGGCAATGTCAATTTACTGGCTTCTCCAGCCTCCATGGGCAG
CGTATGCCAAAAAAGCTCGGTAATAAAAGAGCGTAACTACATGGGATTAT
CAGACTCTTCTTCAATGGACAGCTCAGTGGTCTCCAGTGTCTCTGGTGAG
AGTAGCAAGAGCAGTCTGAATCTCAAGGCTACAGAGCTGAGGCTCGGACT
TCCTGGGTCCCAGTCTCCAGAGAGAGGTTCGGAACTCTGCCTCCTAGGTC
CTGCGCAACTGGGTGAGAAGCCATTGTTCCCTTTGCATCCAACAAATGAT
AGCCACTACCCATCACAGAAGAATGTTGTTTCTGGAAACAAAAGGGGGTT
CTCTGATGCTATGGATGGGTTCTCAGAGGGGAAATATCTTTCTAGTTCTG
AGCTATTGTCACCCAAGG
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