CF509921

Overview
NameCF509921
Unique NameCF509921
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length538
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3221 contig Csv1_Contig3221:165..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509921 vs. ExPASy Swiss-Prot
Match: RL261_ARATH (60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.016e-40
Identity = 85/124 (68.55%), Postives = 93/124 (75.00%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXXTKFTPEDIMQS 372
            A SS RR++MS+PLSTDLRQKYNVRSMP+RKDDEVQ+VRGTYKGREGKVVQVYRRKWVIHIERITREKVNG+TVNVGI PSKVVIT                           TKFT ED+MQ+
Sbjct:   21 ASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLERKAKGRAAADKEKGTKFTSEDVMQN 144          
BLAST of CF509921 vs. ExPASy Swiss-Prot
Match: RL262_ARATH (60S ribosomal protein L26-2 OS=Arabidopsis thaliana GN=RPL26B PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.767e-38
Identity = 80/124 (64.52%), Postives = 92/124 (74.19%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXXTKFTPEDIMQS 372
            APSSVRR+LMS+PLS DLR K+NVRSMP+RKDDEVQVVRGT+KGREGKV+QVYRRKWVIHIERITREKVNGSTVNVG+N S V+IT                           TKF+ ED+M++
Sbjct:   21 APSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRGTFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLERKANGRAAADKEKGTKFSAEDVMEN 144          
BLAST of CF509921 vs. ExPASy Swiss-Prot
Match: RL26_BRARA (60S ribosomal protein L26 OS=Brassica rapa GN=RPL26 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.769e-36
Identity = 77/124 (62.10%), Postives = 88/124 (70.97%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXXTKFTPEDIMQS 372
            A SS RR+ MS+PLSTDLRQKYNVRSMP+RKDDE Q+VRGTYKGREGK+ QVYRRK VIHIER+TREKVNG+TVNVG+ P+KVVIT                           TKFT  D+MQ+
Sbjct:   21 ASSSERRVXMSSPLSTDLRQKYNVRSMPIRKDDEXQIVRGTYKGREGKLXQVYRRKXVIHIERLTREKVNGTTVNVGVQPTKVVITKLRLDKDRKSLLERKAKGRAAADKDKGTKFTAVDVMQN 144          
BLAST of CF509921 vs. ExPASy Swiss-Prot
Match: RL26L_HUMAN (60S ribosomal protein L26-like 1 OS=Homo sapiens GN=RPL26L1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.278e-31
Identity = 67/87 (77.01%), Postives = 80/87 (91.95%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            APS VRR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:   21 APSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of CF509921 vs. ExPASy Swiss-Prot
Match: RL26_MOUSE (60S ribosomal protein L26 OS=Mus musculus GN=Rpl26 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.588e-31
Identity = 66/87 (75.86%), Postives = 80/87 (91.95%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:   21 APSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of CF509921 vs. ExPASy Swiss-Prot
Match: RL26_MACFA (60S ribosomal protein L26 OS=Macaca fascicularis GN=RPL26 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.588e-31
Identity = 66/87 (75.86%), Postives = 80/87 (91.95%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:   21 APSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of CF509921 vs. ExPASy Swiss-Prot
Match: RL26_HUMAN (60S ribosomal protein L26 OS=Homo sapiens GN=RPL26 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.588e-31
Identity = 66/87 (75.86%), Postives = 80/87 (91.95%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:   21 APSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of CF509921 vs. ExPASy Swiss-Prot
Match: RL26_CHICK (60S ribosomal protein L26 (Fragment) OS=Gallus gallus GN=RPL26 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.588e-31
Identity = 66/87 (75.86%), Postives = 80/87 (91.95%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:    4 APSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 90          
BLAST of CF509921 vs. ExPASy Swiss-Prot
Match: RL26_BOVIN (60S ribosomal protein L26 OS=Bos taurus GN=RPL26 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.588e-31
Identity = 66/87 (75.86%), Postives = 80/87 (91.95%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:   21 APSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of CF509921 vs. ExPASy Swiss-Prot
Match: RL26_RAT (60S ribosomal protein L26 OS=Rattus norvegicus GN=Rpl26 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 7.298e-31
Identity = 66/87 (75.86%), Postives = 79/87 (90.80%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI PSKVVIT
Sbjct:   21 APSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIRPSKVVIT 107          
The following BLAST results are available for this feature:
BLAST of CF509921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RL261_ARATH1.016e-4068.5560S ribosomal protein L26-1 OS=Arabidopsis thalian... [more]
RL262_ARATH2.767e-3864.5260S ribosomal protein L26-2 OS=Arabidopsis thalian... [more]
RL26_BRARA5.769e-3662.1060S ribosomal protein L26 OS=Brassica rapa GN=RPL2... [more]
RL26L_HUMAN4.278e-3177.0160S ribosomal protein L26-like 1 OS=Homo sapiens G... [more]
RL26_MOUSE5.588e-3175.8660S ribosomal protein L26 OS=Mus musculus GN=Rpl26... [more]
RL26_MACFA5.588e-3175.8660S ribosomal protein L26 OS=Macaca fascicularis G... [more]
RL26_HUMAN5.588e-3175.8660S ribosomal protein L26 OS=Homo sapiens GN=RPL26... [more]
RL26_CHICK5.588e-3175.8660S ribosomal protein L26 (Fragment) OS=Gallus gal... [more]
RL26_BOVIN5.588e-3175.8660S ribosomal protein L26 OS=Bos taurus GN=RPL26 P... [more]
RL26_RAT7.298e-3175.8660S ribosomal protein L26 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-431 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509921 ID=CF509921; Name=CF509921; organism=Citrus sinensis; type=EST; length=538bp
GCCCCTTCCAGCGTGCGCCGCATCTTGATGAGCGCGCCGCTGTCCACTGA
CCTCCGTCAGAAGTACAACGTAAGGTCGATGCCTGTGCGCAAGGACGACG
AGGTCCAGGTTGTCCGTGGGACCTACAAGGGGCGCGAGGGCAAAGTCGTT
CAAGTGTATCGCCGGAAGTGGGTCATTCACATCGAGCGCATCACTCGCGA
GAAGGTTAATGGATCCACTGTGAATGTGGGAATCAACCCATCAAAGGTCG
TGATCACCAAGCTCCGTCTGGACAAGGACAGGAAGTCTTTGCTCGATCGC
AAGGCCAAGGGACGTGCCGCCGCTGACAAGGAGAAGGGTACCAAGTTCAC
CCCAGAGGATATTATGCAGAGTGTTGACTAATTTTTATAAGAGGTTGTTT
TTAAAGTTTTTGTTTAATCATAGATTTTATGGATTTAGGATGTTTTGTTT
TGGCAATGTCACTAAGATATTTCTATTGTTATTGTGTTATGCCATGAGGA
TCCGATTATGGGCTTATGTTGGAGATTTAAGATACTTC
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