CF509923

Overview
NameCF509923
Unique NameCF509923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7180 contig Csv1_Contig7180:43..615. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509923 vs. ExPASy Swiss-Prot
Match: PUB9_ARATH (U-box domain-containing protein 9 OS=Arabidopsis thaliana GN=PUB9 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.068e-33
Identity = 71/122 (58.20%), Postives = 88/122 (72.13%), Query Frame = 2
Query:  209 MAKTGIFDSDPTVMPKATELKKELQKLVRLIVDDVDYRTETIDQARDTLCAXXXXXXXXXXXXXXXH--ETVSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVL 568
            MAKTG+FDSDPT + KA ELK+E++KL+  I D+ D   +TIDQ +D L A                  ETVSCPEEF+CPLS ELMRDPV+LASGQT+D+ +IQ+WL +GNRTCP+TQQVL
Sbjct:    1 MAKTGVFDSDPTAIAKAKELKREMKKLLIKIDDEDDLGVQTIDQLQDALSALREATMRKMAKSSSLEMLETVSCPEEFRCPLSNELMRDPVVLASGQTYDKLFIQKWLSSGNRTCPKTQQVL 122          
BLAST of CF509923 vs. ExPASy Swiss-Prot
Match: PUB11_ARATH (U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.734e-13
Identity = 31/53 (58.49%), Postives = 43/53 (81.13%), Query Frame = 2
Query:  410 ETVSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVL 568
            + ++ P +F CP+S ELM+DPVI+A+GQT++R YIQRW+  GN TCP+TQQ L
Sbjct:  237 DKLTIPVDFLCPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTCPKTQQKL 289          
BLAST of CF509923 vs. ExPASy Swiss-Prot
Match: PUB14_ARATH (U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12
Identity = 29/54 (53.70%), Postives = 44/54 (81.48%), Query Frame = 2
Query:  407 HETVSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVL 568
            H +   PE F+CP+S ELM+DPVI+++GQT++R  IQ+WL AG++TCP++Q+ L
Sbjct:  243 HRSPVIPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETL 296          
BLAST of CF509923 vs. ExPASy Swiss-Prot
Match: PUB13_ARATH (U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 27/49 (55.10%), Postives = 43/49 (87.76%), Query Frame = 2
Query:  425 PEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLS 571
            P++F+CP+S E+MRDPVI++SGQT++R  I++W++ G+ TCP+TQQ L+
Sbjct:  257 PDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQALT 305          
BLAST of CF509923 vs. ExPASy Swiss-Prot
Match: PUB10_ARATH (U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 28/53 (52.83%), Postives = 43/53 (81.13%), Query Frame = 2
Query:  410 ETVSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVL 568
            + ++ PE+F CP+S ELM+DP I+++GQT++R +IQRW+  GN +CP+TQQ L
Sbjct:  239 DNLTIPEDFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKTQQKL 291          
BLAST of CF509923 vs. ExPASy Swiss-Prot
Match: PUB12_ARATH (U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.772e-12
Identity = 29/49 (59.18%), Postives = 42/49 (85.71%), Query Frame = 2
Query:  425 PEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLS 571
            PEEF+CP+S ELM DPVI++SGQT++R  I++WL+ G+ TCP+TQ+ L+
Sbjct:  257 PEEFRCPISLELMTDPVIVSSGQTYERECIKKWLEGGHLTCPKTQETLT 305          
BLAST of CF509923 vs. ExPASy Swiss-Prot
Match: SL11_ORYSJ (Protein spotted leaf 11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.315e-12
Identity = 27/52 (51.92%), Postives = 44/52 (84.62%), Query Frame = 2
Query:  416 VSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLS 571
            ++ P+EF+CP+S ELM+DPVI+++GQT++R  I++W+ +G+ TCP TQQ +S
Sbjct:  271 ITIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMS 322          
BLAST of CF509923 vs. ExPASy Swiss-Prot
Match: SL11_ORYSI (Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.315e-12
Identity = 27/52 (51.92%), Postives = 44/52 (84.62%), Query Frame = 2
Query:  416 VSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLS 571
            ++ P+EF+CP+S ELM+DPVI+++GQT++R  I++W+ +G+ TCP TQQ +S
Sbjct:  271 ITIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMS 322          
BLAST of CF509923 vs. ExPASy Swiss-Prot
Match: PUB3_ARATH (U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.315e-12
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 2
Query:  416 VSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLS 571
            +S P  F+CPLS ELM DPVI+ASGQTFDR  I++WL  G   CPRT+QVL+
Sbjct:  236 ISIPPYFRCPLSTELMLDPVIVASGQTFDRTSIKKWLDNGLAVCPRTRQVLT 287          
BLAST of CF509923 vs. ExPASy Swiss-Prot
Match: PUB16_ARATH (U-box domain-containing protein 16 OS=Arabidopsis thaliana GN=PUB16 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.023e-12
Identity = 40/112 (35.71%), Postives = 64/112 (57.14%), Query Frame = 2
Query:  257 ATELKKELQKLVRLIVDDVDYRTET-----IDQARDTLCAXXXXXXXXXXXXXXXHETVS---CPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVL 568
            +  L  E+Q+L   I D +D R+++     I   R + C                H+++S    P +F+CP++ ELMRDPV++A+GQT+DR  I  W+++G+ TCP+T QVL
Sbjct:  213 SASLTDEIQRLEDEIQDQIDDRSKSAAASLIGLVRYSKCVLYGPSTPAPDFRR--HQSLSDANIPADFRCPITLELMRDPVVVATGQTYDRESIDLWIQSGHNTCPKTGQVL 322          
The following BLAST results are available for this feature:
BLAST of CF509923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PUB9_ARATH1.068e-3358.20U-box domain-containing protein 9 OS=Arabidopsis t... [more]
PUB11_ARATH2.734e-1358.49U-box domain-containing protein 11 OS=Arabidopsis ... [more]
PUB14_ARATH1.039e-1253.70U-box domain-containing protein 14 OS=Arabidopsis ... [more]
PUB13_ARATH1.357e-1255.10U-box domain-containing protein 13 OS=Arabidopsis ... [more]
PUB10_ARATH1.357e-1252.83U-box domain-containing protein 10 OS=Arabidopsis ... [more]
PUB12_ARATH1.772e-1259.18U-box domain-containing protein 12 OS=Arabidopsis ... [more]
SL11_ORYSJ2.315e-1251.92Protein spotted leaf 11 OS=Oryza sativa subsp. jap... [more]
SL11_ORYSI2.315e-1251.92Protein spotted leaf 11 OS=Oryza sativa subsp. ind... [more]
PUB3_ARATH2.315e-1263.46U-box domain-containing protein 3 OS=Arabidopsis t... [more]
PUB16_ARATH3.023e-1235.71U-box domain-containing protein 16 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-433 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509923 ID=CF509923; Name=CF509923; organism=Citrus sinensis; type=EST; length=573bp
GTTCATAGAATTAGAAGCAGAAGAGAGAGAAAGAGAGCAGGAAAAAAAAA
CTAAAATTGAAAATATAATGAGACTGAGCATTCTCATTCTGATTCTAATT
CTCTGTTTCGCCATTATTGGCAACAATTAGATTGAATTTGTTTATTTATC
TATTTATTAAATTTATATTGCTATCGAATCGACGGCGCTGATTTGATCCA
TTTTGTTTATGGCCAAGACCGGGATATTCGATTCCGATCCGACGGTGATG
CCGAAAGCGACGGAGTTAAAGAAAGAGCTGCAGAAATTAGTGAGGCTTAT
TGTGGATGACGTGGATTATCGTACGGAAACGATCGACCAAGCCAGGGACA
CGCTTTGTGCTTTAAAAGAACTGAAGACGAAGAAGAGATCGCTGTCGCTG
AAGTTGCACGAAACGGTGTCGTGTCCTGAAGAGTTTAAGTGCCCGCTTTC
GAAGGAGTTGATGAGAGATCCCGTTATTTTGGCTTCTGGTCAGACTTTTG
ACAGGCCATATATACAGAGATGGCTGAAAGCAGGAAACCGGACATGCCCA
CGAACCCAACAAGTTCTATCTCA
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