CF509927 | Citrus Genome Database

Overview


Name	CF509927
Unique Name	CF509927
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	686

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig11200	contig	Csv1_Contig11200:83..768.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF509927 vs. ExPASy Swiss-Prot
Match: RBH1B_ARATH (Ras-related protein RABH1B OS=Arabidopsis thaliana GN=RABH1B PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 5.018e-49
Identity = 98/109 (89.91%), Postives = 105/109 (96.33%), Query Frame = -2

Query:  326 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEMVDVNLRSTTGNA 652
            VYDVASRQSFLNT+KWIDEVRTERGSDVI+VLVGNKTDLV+KRQVSIEE EAK+RELNVMFIETSAKAGFNIK LFRKIAAALPGMETLSSTKQE+MVDVNL+S+  NA
Sbjct:   88 VYDVASRQSFLNTTKWIDEVRTERGSDVIVVLVGNKTDLVDKRQVSIEEAEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDMVDVNLKSSNANA 196

HSP 2 Score: 22.7126 bits (47), Expect = 5.018e-49
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = -1

Query:  648 PSYIRDSSVLLCI 686
            PSYIRDSSV + +
Sbjct:   76 PSYIRDSSVAVIV 88

[Close]

BLAST of CF509927 vs. ExPASy Swiss-Prot
Match: RBH1C_ARATH (Ras-related protein RABH1C OS=Arabidopsis thaliana GN=RABH1C PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 3.774e-36
Identity = 78/111 (70.27%), Postives = 96/111 (86.49%), Query Frame = -2

Query:  326 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLS-STKQEEMVDVNLRSTTGNA 652
            VYDV++RQ+FLNTSKWI++V  ERG S+VIIVLVGNKTDLVEKRQVSI EGE K +E  VMFIETSAK  FNIK LFRKIAAALPG+++ S +TK ++MVDVNL++T+ ++
Sbjct:   88 VYDVSNRQTFLNTSKWIEDVHRERGQSNVIIVLVGNKTDLVEKRQVSISEGEDKGKEYGVMFIETSAKENFNIKALFRKIAAALPGVDSYSLATKSDDMVDVNLKTTSNSS 198

HSP 2 Score: 23.0978 bits (48), Expect = 3.774e-36
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = -1

Query:  648 PSYIRDSSVLLCI 686
            PSYIRDSSV + +
Sbjct:   76 PSYIRDSSVAIVV 88

[Close]

BLAST of CF509927 vs. ExPASy Swiss-Prot
Match: RAB6A_PONAB (Ras-related protein Rab-6A OS=Pongo abelii GN=RAB6A PE=2 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 3.776e-36
Identity = 71/102 (69.61%), Postives = 88/102 (86.27%), Query Frame = -2

Query:  347 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEMVDVNL 652
            VYD+ +  SF  T+KWID+VRTERGSDVII+LVGNKTDL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K LFR++AAALPGME+     +E+M+D+ L
Sbjct:   92 VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKL 193

HSP 2 Score: 21.557 bits (44), Expect = 3.776e-36
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = -1

Query:  648 PSYIRDSSVLLCI 686
            PSYIRDS+V + +
Sbjct:   80 PSYIRDSTVAVVV 92

[Close]

BLAST of CF509927 vs. ExPASy Swiss-Prot
Match: RAB6A_MOUSE (Ras-related protein Rab-6A OS=Mus musculus GN=Rab6a PE=1 SV=4)

HSP 1 Score: 150.984 bits (380), Expect = 3.776e-36
Identity = 71/102 (69.61%), Postives = 88/102 (86.27%), Query Frame = -2

Query:  347 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEMVDVNL 652
            VYD+ +  SF  T+KWID+VRTERGSDVII+LVGNKTDL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K LFR++AAALPGME+     +E+M+D+ L
Sbjct:   92 VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKL 193

HSP 2 Score: 21.557 bits (44), Expect = 3.776e-36
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = -1

Query:  648 PSYIRDSSVLLCI 686
            PSYIRDS+V + +
Sbjct:   80 PSYIRDSTVAVVV 92

[Close]

BLAST of CF509927 vs. ExPASy Swiss-Prot
Match: RAB6A_HUMAN (Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=1 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 3.776e-36
Identity = 71/102 (69.61%), Postives = 88/102 (86.27%), Query Frame = -2

Query:  347 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEMVDVNL 652
            VYD+ +  SF  T+KWID+VRTERGSDVII+LVGNKTDL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K LFR++AAALPGME+     +E+M+D+ L
Sbjct:   92 VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKL 193

HSP 2 Score: 21.557 bits (44), Expect = 3.776e-36
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = -1

Query:  648 PSYIRDSSVLLCI 686
            PSYIRDS+V + +
Sbjct:   80 PSYIRDSTVAVVV 92

[Close]

BLAST of CF509927 vs. ExPASy Swiss-Prot
Match: RAB6A_RAT (Ras-related protein Rab-6A (Fragment) OS=Rattus norvegicus GN=Rab6a PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.822e-36
Identity = 71/102 (69.61%), Postives = 88/102 (86.27%), Query Frame = -2

Query:  347 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEMVDVNL 652
            VYD+ +  SF  T+KWID+VRTERGSDVII+LVGNKTDL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K LFR++AAALPGME+     +E+M+D+ L
Sbjct:   24 VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKL 125

HSP 2 Score: 21.557 bits (44), Expect = 3.822e-36
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = -1

Query:  648 PSYIRDSSVLLCI 686
            PSYIRDS+V + +
Sbjct:   12 PSYIRDSTVAVVV 24

[Close]

BLAST of CF509927 vs. ExPASy Swiss-Prot
Match: RAB6A_CHICK (Ras-related protein Rab-6A OS=Gallus gallus GN=RAB6A PE=2 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 5.567e-36
Identity = 71/102 (69.61%), Postives = 88/102 (86.27%), Query Frame = -2

Query:  347 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEMVDVNL 652
            VYD+ +  SF  T+KWID+VRTERGSDVII+LVGNKTDL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K LFR++AAALPGME+     +E+M+D+ L
Sbjct:   92 VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDKSREDMIDIKL 193

[Close]

BLAST of CF509927 vs. ExPASy Swiss-Prot
Match: RAB6B_MOUSE (Ras-related protein Rab-6B OS=Mus musculus GN=Rab6b PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.400e-34
Identity = 66/102 (64.71%), Postives = 86/102 (84.31%), Query Frame = -2

Query:  347 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEMVDVNL 652
            VYD+ +  SF  TSKWID+VRTERGSDVII+LVGNKTDL +KRQ++IEEGE +++EL+VMFIETSAK G+N+K LFR++A+ALPGME +    +E M+D+ L
Sbjct:   92 VYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGMIDIKL 193

HSP 2 Score: 21.557 bits (44), Expect = 4.400e-34
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = -1

Query:  648 PSYIRDSSVLLCI 686
            PSYIRDS+V + +
Sbjct:   80 PSYIRDSTVAVVV 92

[Close]

BLAST of CF509927 vs. ExPASy Swiss-Prot
Match: RAB6B_HUMAN (Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6B PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.400e-34
Identity = 66/102 (64.71%), Postives = 86/102 (84.31%), Query Frame = -2

Query:  347 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEMVDVNL 652
            VYD+ +  SF  TSKWID+VRTERGSDVII+LVGNKTDL +KRQ++IEEGE +++EL+VMFIETSAK G+N+K LFR++A+ALPGME +    +E M+D+ L
Sbjct:   92 VYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGMIDIKL 193

HSP 2 Score: 21.557 bits (44), Expect = 4.400e-34
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = -1

Query:  648 PSYIRDSSVLLCI 686
            PSYIRDS+V + +
Sbjct:   80 PSYIRDSTVAVVV 92

[Close]

BLAST of CF509927 vs. ExPASy Swiss-Prot
Match: RAB6B_BOVIN (Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.400e-34
Identity = 66/102 (64.71%), Postives = 86/102 (84.31%), Query Frame = -2

Query:  347 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEMVDVNL 652
            VYD+ +  SF  TSKWID+VRTERGSDVII+LVGNKTDL +KRQ++IEEGE +++EL+VMFIETSAK G+N+K LFR++A+ALPGME +    +E M+D+ L
Sbjct:   92 VYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGMIDIKL 193

HSP 2 Score: 21.557 bits (44), Expect = 4.400e-34
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = -1

Query:  648 PSYIRDSSVLLCI 686
            PSYIRDS+V + +
Sbjct:   80 PSYIRDSTVAVVV 92

The following BLAST results are available for this feature:

BLAST of CF509927 vs. ExPASy Swiss-Prot

BLAST of CF509927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93


Match Name	E-value	Identity	Description
RBH1B_ARATH	5.018e-49	89.91	Ras-related protein RABH1B OS=Arabidopsis thaliana...	[more]
RBH1C_ARATH	3.774e-36	70.27	Ras-related protein RABH1C OS=Arabidopsis thaliana...	[more]
RAB6A_PONAB	3.776e-36	69.61	Ras-related protein Rab-6A OS=Pongo abelii GN=RAB6...	[more]
RAB6A_MOUSE	3.776e-36	69.61	Ras-related protein Rab-6A OS=Mus musculus GN=Rab6...	[more]
RAB6A_HUMAN	3.776e-36	69.61	Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6...	[more]
RAB6A_RAT	3.822e-36	69.61	Ras-related protein Rab-6A (Fragment) OS=Rattus no...	[more]
RAB6A_CHICK	5.567e-36	69.61	Ras-related protein Rab-6A OS=Gallus gallus GN=RAB...	[more]
RAB6B_MOUSE	4.400e-34	64.71	Ras-related protein Rab-6B OS=Mus musculus GN=Rab6...	[more]
RAB6B_HUMAN	4.400e-34	64.71	Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6...	[more]
RAB6B_BOVIN	4.400e-34	64.71	Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B ...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_125000-437 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_A11 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF509927 ID=CF509927; Name=CF509927; organism=Citrus sinensis; type=EST; length=686bp
TTTTTTTTCCAAGAATCCGAATCTTATAAATGTATCATTTCTTTGTTTGC
AACCCTGAGGACTATGAATTGTACCGGGAAAACTCAGTAAATATTACCAC
ACATATAATGCCTTAGGACTAACTAGACAACAGCAGTAAAATACTTCCAA
ACAGCAATGGGGAAAAATATAAAAGAAGAAAAATACTCAGAGGCTGTGGT
AACCTTTACAGATCTGGAGTTTAAAAAGGTCGAAAGAACCTAATAGCATG
AGAGAGACAATAGGCACCAAGACGTCCAGGATTGCATCAACAAGAGCATC
CACTTGACTGAGACTGGGACTGTGATGCATTGCCAGTTGTAGACCTCAGA
TTCACGTCAACCATTTCTTCTTGCTTTGTTGAAGAAAGTGTTTCCATCCC
TGGCAATGCTGCAGCAATTTTCCGAAACAAAGGCTTTATATTAAAACCAG
CTTTAGCACTCGTTTCAATGAACATGACGTTGAGTTCCCGAGATTTGGCT
TCTCCTTCCTCTATGGAGACTTGCCTTTTTTCCACAAGGTCAGTTTTGTT
CCCAACAAGGACAATGATGACATCACTACCCCTCTCGGTTCGAACCTCAT
CAATCCATTTTGAAGTGTTCAAGAAAGATTGCCGGCTTGCAACATCATAT
ACACAACAGCACAGAAGAATCCCTGATGTAGCTTGG