CF509936
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF509936 vs. ExPASy Swiss-Prot
Match: PSBS_SPIOL (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 1.344e-37 Identity = 80/156 (51.28%), Postives = 94/156 (60.26%), Query Frame = 2 Query: 71 MAQTMLLMS-GVSTSHAGNLKRDSLVTFQTQMLRPKPF-SHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFIL 532 MAQ MLLM GVST++ +LKR++L+ Q Q ++PK S+L F+PL + + K KVED K+NELFVGRVAMIGFAASLLGEGITGKGIL+QLNLETGIPIYEAEPLLLFFIL Sbjct: 1 MAQAMLLMMPGVSTTNTIDLKRNALLKLQIQKIKPKSSTSNLFFSPLPSSSSSSSTVFKTLALFKSKAKAPKKVE--------KPKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFIL 148 HSP 2 Score: 51.9878 bits (123), Expect = 1.344e-37 Identity = 28/36 (77.78%), Postives = 29/36 (80.56%), Query Frame = 1 Query: 523 FHLVTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPP 630 F L TLLGAIGALGDRG+FVDEP TGL AVIPP Sbjct: 146 FILFTLLGAIGALGDRGRFVDEP--TTGLEKAVIPP 179 HSP 3 Score: 75.0998 bits (183), Expect = 3.322e-13 Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = 2 Query: 374 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFIL 532 K NELFVGR+A +GFA SL+GE ITGKG LAQLN+ETG+PI E EPL+L ++ Sbjct: 200 KSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVV 252
BLAST of CF509936 vs. ExPASy Swiss-Prot
Match: PSBS_TOBAC (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.299e-34 Identity = 74/154 (48.05%), Postives = 81/154 (52.60%), Query Frame = 2 Query: 71 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFIL 532 MAQTMLL + ++SLV + L+PKP S L + F + K KVED KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFIL Sbjct: 1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSFFLPSLPLKYPSASASASSHFTSTTVALFKSKAKAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFIL 147 HSP 2 Score: 53.9138 bits (128), Expect = 1.299e-34 Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 1 Query: 523 FHLVTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPP 630 F L LLGAIGAL DRGKF+D+P PTGL AVIPP Sbjct: 145 FILFNLLGAIGALEDRGKFIDDPAPPTGLDKAVIPP 180 HSP 3 Score: 74.7146 bits (182), Expect = 4.339e-13 Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 2 Query: 374 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFIL 532 K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EPLLLF I+ Sbjct: 201 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIV 253
BLAST of CF509936 vs. ExPASy Swiss-Prot
Match: PSBS_SOLLC (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum GN=PSBS PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.693e-34 Identity = 75/156 (48.08%), Postives = 81/156 (51.92%), Query Frame = 2 Query: 71 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFN--PLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFIL 532 MAQTMLL + ++SLV + L+PKP S L PL + K KVED KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFIL Sbjct: 1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSLFLPSLPLRFSSSSTNASSSKFTSTTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFIL 149 HSP 2 Score: 57.3806 bits (137), Expect = 1.693e-34 Identity = 28/36 (77.78%), Postives = 29/36 (80.56%), Query Frame = 1 Query: 523 FHLVTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPP 630 F L LLGAIGALGDRGKFVD+P PTGL AVIPP Sbjct: 147 FILFNLLGAIGALGDRGKFVDDPTPPTGLEKAVIPP 182 HSP 3 Score: 74.3294 bits (181), Expect = 5.666e-13 Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 2 Query: 374 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFI 529 K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EPLLLF I Sbjct: 203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNI 254
BLAST of CF509936 vs. ExPASy Swiss-Prot
Match: PSBS_SOLSG (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum GN=PSBS PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 5.253e-33 Identity = 75/156 (48.08%), Postives = 81/156 (51.92%), Query Frame = 2 Query: 71 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFN--PLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFIL 532 MAQTMLL + ++SLV + L+PKP S L PL + K KVED KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFIL Sbjct: 1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSLFLPSLPLRFSSSTTNFSSSKFTSTTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFIL 149 HSP 2 Score: 52.373 bits (124), Expect = 5.253e-33 Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 1 Query: 523 FHLVTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPP 630 F L LLGAIGALGDRG+F+D+P TGL AVIPP Sbjct: 147 FILFNLLGAIGALGDRGRFIDDPAPATGLEKAVIPP 182 HSP 3 Score: 74.3294 bits (181), Expect = 5.666e-13 Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 2 Query: 374 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFI 529 K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EPLLLF I Sbjct: 203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNI 254
BLAST of CF509936 vs. ExPASy Swiss-Prot
Match: PSBS_ARATH (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBS PE=1 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 2.565e-32 Identity = 55/71 (77.46%), Postives = 56/71 (78.87%), Query Frame = 2 Query: 320 KPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFIL 532 K KVED K NELFVGRVAMIGFAASLLGE +TGKGILAQLNLETGIPIYEAEPLLLFFIL Sbjct: 69 KSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEPLLLFFIL 139 HSP 2 Score: 55.0694 bits (131), Expect = 2.565e-32 Identity = 29/36 (80.56%), Postives = 30/36 (83.33%), Query Frame = 1 Query: 523 FHLVTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPP 630 F L TLLGAIGALGDRGKFVD+P PTGL AVIPP Sbjct: 137 FILFTLLGAIGALGDRGKFVDDP--PTGLEKAVIPP 170 HSP 3 Score: 71.633 bits (174), Expect = 3.673e-12 Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 2 Query: 374 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLL 520 K NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI + EPL+L Sbjct: 191 KANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEPLVL 239 The following BLAST results are available for this feature:
BLAST of CF509936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF509936 ID=CF509936; Name=CF509936; organism=Citrus sinensis; type=EST; length=632bpback to top |