CF509936

Overview
NameCF509936
Unique NameCF509936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12634 contig Csv1_Contig12634:13..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509936 vs. ExPASy Swiss-Prot
Match: PSBS_SPIOL (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.344e-37
Identity = 80/156 (51.28%), Postives = 94/156 (60.26%), Query Frame = 2
Query:   71 MAQTMLLMS-GVSTSHAGNLKRDSLVTFQTQMLRPKPF-SHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFIL 532
            MAQ MLLM  GVST++  +LKR++L+  Q Q ++PK   S+L F+PL +                                  + K KVED            K+NELFVGRVAMIGFAASLLGEGITGKGIL+QLNLETGIPIYEAEPLLLFFIL
Sbjct:    1 MAQAMLLMMPGVSTTNTIDLKRNALLKLQIQKIKPKSSTSNLFFSPLPSSSSSSSTVFKTLALFKSKAKAPKKVE--------KPKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFIL 148          

HSP 2 Score: 51.9878 bits (123), Expect = 1.344e-37
Identity = 28/36 (77.78%), Postives = 29/36 (80.56%), Query Frame = 1
Query:  523 FHLVTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPP 630
            F L TLLGAIGALGDRG+FVDEP   TGL  AVIPP
Sbjct:  146 FILFTLLGAIGALGDRGRFVDEP--TTGLEKAVIPP 179          

HSP 3 Score: 75.0998 bits (183), Expect = 3.322e-13
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = 2
Query:  374 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFIL 532
            K NELFVGR+A +GFA SL+GE ITGKG LAQLN+ETG+PI E EPL+L  ++
Sbjct:  200 KSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVV 252          
BLAST of CF509936 vs. ExPASy Swiss-Prot
Match: PSBS_TOBAC (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.299e-34
Identity = 74/154 (48.05%), Postives = 81/154 (52.60%), Query Frame = 2
Query:   71 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFIL 532
            MAQTMLL +           ++SLV    + L+PKP S      L  +                   F             + K KVED            KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFIL
Sbjct:    1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSFFLPSLPLKYPSASASASSHFTSTTVALFKSKAKAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFIL 147          

HSP 2 Score: 53.9138 bits (128), Expect = 1.299e-34
Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 1
Query:  523 FHLVTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPP 630
            F L  LLGAIGAL DRGKF+D+P  PTGL  AVIPP
Sbjct:  145 FILFNLLGAIGALEDRGKFIDDPAPPTGLDKAVIPP 180          

HSP 3 Score: 74.7146 bits (182), Expect = 4.339e-13
Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 2
Query:  374 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFIL 532
            K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EPLLLF I+
Sbjct:  201 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIV 253          
BLAST of CF509936 vs. ExPASy Swiss-Prot
Match: PSBS_SOLLC (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum GN=PSBS PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.693e-34
Identity = 75/156 (48.08%), Postives = 81/156 (51.92%), Query Frame = 2
Query:   71 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFN--PLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFIL 532
            MAQTMLL +           ++SLV    + L+PKP S L     PL                                    + K KVED            KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFIL
Sbjct:    1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSLFLPSLPLRFSSSSTNASSSKFTSTTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFIL 149          

HSP 2 Score: 57.3806 bits (137), Expect = 1.693e-34
Identity = 28/36 (77.78%), Postives = 29/36 (80.56%), Query Frame = 1
Query:  523 FHLVTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPP 630
            F L  LLGAIGALGDRGKFVD+P  PTGL  AVIPP
Sbjct:  147 FILFNLLGAIGALGDRGKFVDDPTPPTGLEKAVIPP 182          

HSP 3 Score: 74.3294 bits (181), Expect = 5.666e-13
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 2
Query:  374 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFI 529
            K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EPLLLF I
Sbjct:  203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNI 254          
BLAST of CF509936 vs. ExPASy Swiss-Prot
Match: PSBS_SOLSG (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum GN=PSBS PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 5.253e-33
Identity = 75/156 (48.08%), Postives = 81/156 (51.92%), Query Frame = 2
Query:   71 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFN--PLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFIL 532
            MAQTMLL +           ++SLV    + L+PKP S L     PL                                    + K KVED            KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFIL
Sbjct:    1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSLFLPSLPLRFSSSTTNFSSSKFTSTTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFIL 149          

HSP 2 Score: 52.373 bits (124), Expect = 5.253e-33
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 1
Query:  523 FHLVTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPP 630
            F L  LLGAIGALGDRG+F+D+P   TGL  AVIPP
Sbjct:  147 FILFNLLGAIGALGDRGRFIDDPAPATGLEKAVIPP 182          

HSP 3 Score: 74.3294 bits (181), Expect = 5.666e-13
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 2
Query:  374 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFI 529
            K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EPLLLF I
Sbjct:  203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNI 254          
BLAST of CF509936 vs. ExPASy Swiss-Prot
Match: PSBS_ARATH (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBS PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.565e-32
Identity = 55/71 (77.46%), Postives = 56/71 (78.87%), Query Frame = 2
Query:  320 KPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFIL 532
            K KVED            K NELFVGRVAMIGFAASLLGE +TGKGILAQLNLETGIPIYEAEPLLLFFIL
Sbjct:   69 KSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEPLLLFFIL 139          

HSP 2 Score: 55.0694 bits (131), Expect = 2.565e-32
Identity = 29/36 (80.56%), Postives = 30/36 (83.33%), Query Frame = 1
Query:  523 FHLVTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPP 630
            F L TLLGAIGALGDRGKFVD+P  PTGL  AVIPP
Sbjct:  137 FILFTLLGAIGALGDRGKFVDDP--PTGLEKAVIPP 170          

HSP 3 Score: 71.633 bits (174), Expect = 3.673e-12
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 2
Query:  374 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLL 520
            K NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI + EPL+L
Sbjct:  191 KANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEPLVL 239          
The following BLAST results are available for this feature:
BLAST of CF509936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSBS_SPIOL1.344e-3751.28Photosystem II 22 kDa protein, chloroplastic OS=Sp... [more]
PSBS_TOBAC1.299e-3448.05Photosystem II 22 kDa protein, chloroplastic OS=Ni... [more]
PSBS_SOLLC1.693e-3448.08Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_SOLSG5.253e-3348.08Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_ARATH2.565e-3277.46Photosystem II 22 kDa protein, chloroplastic OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-448 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509936 ID=CF509936; Name=CF509936; organism=Citrus sinensis; type=EST; length=632bp
CTGAAACAGTGAAACTAGCTTTGCTGGCTTGAGAAATCTAGCAGAGTGAC
AACATATTCATTCAATATTAATGGCTCAAACTATGCTGCTCATGTCTGGG
GTTTCCACTAGCCACGCAGGAAACTTGAAAAGAGACTCTTTAGTCACATT
TCAAACGCAGATGCTGAGACCTAAGCCATTCTCTCATCTTATGTTCAACC
CACTCTCTAATGAATCTTTAACTGCTGCTGCGGCTTCTTCATCATCTAAA
GCTTTTTCTACTGTTGCCCTCTTCAAATCTAAAACCAAAGCTCCACCCAA
GACCAAGAAGGTTGAATCAAAGCCAAAAGTTGAGGATGGTATCTTTGGGA
CCTCTGGAGGATTTGGTTTTACAAAGCAAAATGAGCTCTTTGTTGGTCGT
GTTGCCATGATTGGCTTTGCTGCTTCCTTGTTGGGTGAGGGAATAACTGG
GAAGGGGATTCTAGCTCAGTTGAATTTAGAGACCGGAATTCCAATCTATG
AAGCAGAGCCACTGCTTTTATTTTTCATCTTGTCACCTTGCTTGGAGCAA
TTGGAGCTTTGGGTGACCGTGGTAAGTTCGTTGATGAGCCAGATGAGCCC
ACTGGGCTCGGAGGAGCTGTCATTCCTCCAGG
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