CF509938

Overview
NameCF509938
Unique NameCF509938
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509938 vs. ExPASy Swiss-Prot
Match: SYT_SYNS9 (Threonyl-tRNA synthetase OS=Synechococcus sp. (strain CC9902) GN=thrS PE=3 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 2.423e-87
Identity = 150/231 (64.94%), Postives = 186/231 (80.52%), Query Frame = 3
Query:    3 LHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGNDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKE 692
            +HGL RVRGFTQDDAH+FCL DQI DEI  +LDLTE IL  F FN YE+NLST+PEK++G   +WE AT  L +AL+ KGW+++IDEGGGAFYGPKIDLKIEDA+GR WQCSTIQ+DFNLP+RF + YV ++  K++PIMIHRA+ GSLERFFG++ E+YAGDFP WL+P Q R+LPVTD    Y  +V+ +LKT GIRA I   G+RL K+IR  E+ KIP++AV+GAKE
Sbjct:  338 MHGLMRVRGFTQDDAHVFCLPDQISDEILRILDLTERILSTFDFNHYEINLSTRPEKSIGSEAVWELATKGLTEALERKGWNFKIDEGGGAFYGPKIDLKIEDAIGRMWQCSTIQLDFNLPERFGLDYVAADGSKQQPIMIHRAIFGSLERFFGIMTENYAGDFPFWLAPEQIRLLPVTDDVQPYAEQVLNQLKTAGIRATIDQSGDRLGKIIRTGEQMKIPVLAVIGAKE 568          
BLAST of CF509938 vs. ExPASy Swiss-Prot
Match: SYT_SYNS3 (Threonyl-tRNA synthetase OS=Synechococcus sp. (strain CC9311) GN=thrS PE=3 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 4.569e-86
Identity = 151/231 (65.37%), Postives = 184/231 (79.65%), Query Frame = 3
Query:    3 LHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGNDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKE 692
            +HGL RVRGFTQDDAH+FCL +QI DEI  +L+LTE IL  F F+ YE+NLSTKP+KA+G + +WE AT  L +AL  KGW Y+IDEGGGAFYGPKIDLKIEDA+GR WQCSTIQ+DFNLP+RF++ Y+ ++  K+RPIMIHRA+ GSLERFFG++ E+YAGDFP WL+P Q R+LPVTD  L Y  E   +LK  GIRA I   G+RL KLIR  EK KIP++AV+GAKE
Sbjct:  338 MHGLMRVRGFTQDDAHVFCLPEQISDEILRILNLTERILSTFDFSNYEINLSTKPDKAIGDDAVWELATKGLIEALKRKGWAYKIDEGGGAFYGPKIDLKIEDAIGRMWQCSTIQLDFNLPERFELDYIAADGSKQRPIMIHRAIFGSLERFFGIMTENYAGDFPFWLAPEQIRLLPVTDEVLGYAEEFQNQLKAAGIRASIDRSGDRLGKLIRIGEKMKIPVLAVIGAKE 568          
BLAST of CF509938 vs. ExPASy Swiss-Prot
Match: SYT_SYNPW (Threonyl-tRNA synthetase OS=Synechococcus sp. (strain WH7803) GN=thrS PE=3 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 5.052e-85
Identity = 146/231 (63.20%), Postives = 184/231 (79.65%), Query Frame = 3
Query:    3 LHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGNDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKE 692
            +HGL RVRGFTQDDAH+FCL +QI DEI  +LDLTE IL  F FN YE+NLST+PEK++G + +W+ AT  L +AL+ KGW Y+IDEGGGAFYGPKIDLKIEDA+GR WQCSTIQ+DFNLP+RF + Y+ ++  K+RPIMIHRA+ GSLERFFG++ E+YAGD+PLWL+P Q R+LPVTD    Y   ++ +L   G+RA I   G+RL KLIR  E+ KIP++AV+GAKE
Sbjct:  338 MHGLMRVRGFTQDDAHVFCLPEQISDEILKILDLTERILSTFDFNTYEINLSTRPEKSIGDDAVWDLATKGLIEALERKGWAYKIDEGGGAFYGPKIDLKIEDAIGRMWQCSTIQLDFNLPERFKLDYIAADGSKQRPIMIHRAIFGSLERFFGIMTENYAGDYPLWLAPEQVRLLPVTDEVQPYAESLLDQLTQAGVRATIDRSGDRLGKLIRTGEQMKIPVLAVIGAKE 568          
BLAST of CF509938 vs. ExPASy Swiss-Prot
Match: SYT_SYNPX (Threonyl-tRNA synthetase OS=Synechococcus sp. (strain WH8102) GN=thrS PE=3 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 8.617e-85
Identity = 146/231 (63.20%), Postives = 183/231 (79.22%), Query Frame = 3
Query:    3 LHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGNDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKE 692
            +HGL RVRGFTQDDAH+FCL +QI DEI  +LDLTE IL  F FN YE+NLST+PEK++G + +W+ AT  L +AL+ KGW Y+IDEGGGAFYGPKIDLKIEDA+GR WQCSTIQ+DFNLP+RF + YV ++  K+RPIMIHRA+ GSLERFFG++ E+YAGD+P WL+P Q R+LPVTD    Y   ++ +L   G+RA I   G+RL KLIR  E+ KIP++AV+GAKE
Sbjct:  338 MHGLMRVRGFTQDDAHVFCLPEQISDEILKILDLTERILSTFDFNTYEINLSTRPEKSIGDDAVWDLATKGLIEALERKGWKYKIDEGGGAFYGPKIDLKIEDAIGRMWQCSTIQLDFNLPERFKLDYVAADGSKQRPIMIHRAIFGSLERFFGIMTENYAGDYPFWLAPEQVRLLPVTDEVQPYAESLLDQLTQAGVRATIDRSGDRLGKLIRTGEQMKIPVLAVIGAKE 568          
BLAST of CF509938 vs. ExPASy Swiss-Prot
Match: SYT_SYNSC (Threonyl-tRNA synthetase OS=Synechococcus sp. (strain CC9605) GN=thrS PE=3 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 1.920e-84
Identity = 143/231 (61.90%), Postives = 185/231 (80.09%), Query Frame = 3
Query:    3 LHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGNDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKE 692
            +HGL RVRGFTQDDAH+FCL +QI DEI  +LDLTE IL  F F+ YE+NLST+PEK++G + +W+ AT  L +AL+ KGW Y+IDEGGGAFYGPKIDLKIEDA+GR WQCSTIQ+DFNLP+RF++ Y+ ++  K+RPIMIHRA+ GSLERFFG++ E+YAGD+P WL+P Q R+LPVTD    Y  +++ +L   G+RA +   G+RL KLIR  E+ KIP++AV+GAKE
Sbjct:  338 MHGLMRVRGFTQDDAHVFCLPEQISDEILKILDLTERILSAFDFSNYEINLSTRPEKSIGEDAVWDLATKGLIEALERKGWAYKIDEGGGAFYGPKIDLKIEDAIGRMWQCSTIQLDFNLPERFELDYIAADGSKQRPIMIHRAIFGSLERFFGIMTENYAGDYPFWLAPEQVRLLPVTDEVQPYAEQLLDQLTKAGVRATVDRSGDRLGKLIRTGEQMKIPVLAVIGAKE 568          
BLAST of CF509938 vs. ExPASy Swiss-Prot
Match: SYT_THISH (Threonyl-tRNA synthetase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=thrS PE=3 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 4.003e-82
Identity = 142/231 (61.47%), Postives = 184/231 (79.65%), Query Frame = 3
Query:    3 LHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGNDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKE 692
            LHGL RVRGFTQDDAHIFC EDQI+ EI  +LDLT E+L  FGF+ ++VNLST+P+KAVG + IWE AT+AL+ AL+ KG DY +DEGGGAFYGPKID+KI DA+GR+WQCST+Q+DFNLP+RF++ YV  ++ ++RPIMIHRA+LGS+ERFFGVLIEHYAG FPLWL+P+Q +VL +TD Q +Y  EV  +L+  GIRA+     E++   IR    Q++P + V+G +E
Sbjct:  371 LHGLMRVRGFTQDDAHIFCREDQIEAEILRILDLTLEVLQAFGFDDFDVNLSTRPDKAVGSDQIWEHATAALKAALEKKGLDYSVDEGGGAFYGPKIDIKIRDAIGREWQCSTVQLDFNLPERFEMEYVAEDNSRRRPIMIHRALLGSVERFFGVLIEHYAGSFPLWLAPVQVQVLTITDRQDDYAREVADRLRNRGIRADADLRNEKIGFKIREHTLQRVPYLLVLGDRE 601          
BLAST of CF509938 vs. ExPASy Swiss-Prot
Match: SYT_SULSY (Threonyl-tRNA synthetase OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=thrS PE=3 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 4.893e-80
Identity = 141/231 (61.04%), Postives = 178/231 (77.06%), Query Frame = 3
Query:    3 LHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGNDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKE 692
            LHGL RVRGFTQDDAHI C EDQ++DEIR VL+L    L  +GF+++EV LSTKPEK VG + +WE A ++LR A++  G DY+ID+GGGAFYGPKID+KI+DA+GR WQCSTIQ DFNLP+RFD+ Y+  +++K RP MIHRA+ GS+ERF GVL+EHYAG  P+WLSP+Q +++P+ D  LEY   V +KL  N IR E+    ER+ K IR+AE QKIP M VVG KE
Sbjct:  375 LHGLMRVRGFTQDDAHIICREDQVEDEIREVLNLALNTLKSYGFDEFEVYLSTKPEKYVGDDKMWEVAENSLRKAIESTGLDYKIDDGGGAFYGPKIDVKIKDAIGRLWQCSTIQFDFNLPERFDMYYIGEDNQKHRPYMIHRAIFGSIERFIGVLLEHYAGFLPVWLSPVQVKIIPIADKHLEYAETVKQKLLENDIRVELDDRNERMNKKIRDAELQKIPFMLVVGDKE 605          
BLAST of CF509938 vs. ExPASy Swiss-Prot
Match: SYT_NITOC (Threonyl-tRNA synthetase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=thrS PE=3 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 9.228e-79
Identity = 140/231 (60.61%), Postives = 178/231 (77.06%), Query Frame = 3
Query:    3 LHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGNDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKE 692
            LHGL RVRGFTQDDAHIFC E+QI++EI  +LDLT E+L  FGF++YE++LST+PEK+VG   IWE+AT ALR ALD KG DY +DEGGGAFYGPKID+KIEDA+GRKWQCST+Q+DFNLP+RF + YV  +  + RPIMIHRAVLGSLERFFGVLIEHY G FP WL+P+Q  V+ +TD Q  Y  +V + ++  G R+ +    E++   IR    ++IP + V+G +E
Sbjct:  371 LHGLMRVRGFTQDDAHIFCREEQIENEILGILDLTLEMLAAFGFDRYEIDLSTRPEKSVGPEAIWEQATQALRSALDKKGLDYAVDEGGGAFYGPKIDIKIEDAIGRKWQCSTVQLDFNLPERFAMEYVAEDGARHRPIMIHRAVLGSLERFFGVLIEHYEGKFPPWLAPVQVVVMSITDRQEGYARQVEEAMRNKGFRSLLDLRNEKIGFKIREHILRRIPYLLVIGDRE 601          
BLAST of CF509938 vs. ExPASy Swiss-Prot
Match: SYT_MAGSM (Threonyl-tRNA synthetase OS=Magnetococcus sp. (strain MC-1) GN=thrS PE=3 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 2.685e-78
Identity = 137/231 (59.31%), Postives = 177/231 (76.62%), Query Frame = 3
Query:    3 LHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGNDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKE 692
            LHGLFRVRGFTQDDAHIFC E QI++EI+ +LDLT +IL  +GF+ +E+NLST+PEK+VG   IW+KAT ALR A+  +   Y +DEGGGAFYGPKID+KI D++GRKWQCST+Q+DFNLP+RFD+ Y+  + E  RPIMIHRA++GSLERFFG+L+EHYAG FP+WL+P+QA V  +TD Q  Y   V+  LK  G+R EI    E++   IR    +++P + VVG KE
Sbjct:  372 LHGLFRVRGFTQDDAHIFCTEQQIEEEIQRILDLTLDILRTYGFSDFEINLSTRPEKSVGSAAIWDKATEALRRAIVSRDLSYVVDEGGGAFYGPKIDVKITDSIGRKWQCSTVQLDFNLPERFDMGYIGEDGESHRPIMIHRALMGSLERFFGILVEHYAGWFPMWLAPVQAVVCSITDAQHAYAETVLAALKKAGLRVEIDLRNEKVGYKIREHTLKRVPYLLVVGDKE 602          
BLAST of CF509938 vs. ExPASy Swiss-Prot
Match: SYT_ACIF5 (Threonyl-tRNA synthetase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=thrS PE=3 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 2.778e-75
Identity = 135/231 (58.44%), Postives = 174/231 (75.32%), Query Frame = 3
Query:    3 LHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGNDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKE 692
            LHGL RVRGFTQDDAH+FC  DQI+ EI AVL L  +IL  FGF++YE+NLST+P  +VG ++IW+ AT ALR+AL+  G +YQ+D GGGAFYGPKIDLKI+DA+GRKWQCST+Q+DFNLP+RF + YV  +  +K PIM+HRA+ GS+ERFFGVLIEHY G FP+WL+P+QA VLP+++   EY   V   L   GIRAE     E++   IR    +++P + VVG +E
Sbjct:  371 LHGLMRVRGFTQDDAHVFCRPDQIEAEIGAVLVLVRKILGTFGFDQYEINLSTRPGHSVGSDEIWDAATQALRNALERAGLEYQVDAGGGAFYGPKIDLKIQDAIGRKWQCSTVQLDFNLPERFAMEYVAEDGARKVPIMVHRAIFGSIERFFGVLIEHYEGKFPVWLAPVQAVVLPISEHYSEYAESVSDVLVKRGIRAETDLRNEKIGYKIRAHTLRRVPYLLVVGERE 601          
The following BLAST results are available for this feature:
BLAST of CF509938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYT_SYNS92.423e-8764.94Threonyl-tRNA synthetase OS=Synechococcus sp. (str... [more]
SYT_SYNS34.569e-8665.37Threonyl-tRNA synthetase OS=Synechococcus sp. (str... [more]
SYT_SYNPW5.052e-8563.20Threonyl-tRNA synthetase OS=Synechococcus sp. (str... [more]
SYT_SYNPX8.617e-8563.20Threonyl-tRNA synthetase OS=Synechococcus sp. (str... [more]
SYT_SYNSC1.920e-8461.90Threonyl-tRNA synthetase OS=Synechococcus sp. (str... [more]
SYT_THISH4.003e-8261.47Threonyl-tRNA synthetase OS=Thioalkalivibrio sp. (... [more]
SYT_SULSY4.893e-8061.04Threonyl-tRNA synthetase OS=Sulfurihydrogenibium s... [more]
SYT_NITOC9.228e-7960.61Threonyl-tRNA synthetase OS=Nitrosococcus oceani (... [more]
SYT_MAGSM2.685e-7859.31Threonyl-tRNA synthetase OS=Magnetococcus sp. (str... [more]
SYT_ACIF52.778e-7558.44Threonyl-tRNA synthetase OS=Acidithiobacillus ferr... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-450 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509938 ID=CF509938; Name=CF509938; organism=Citrus sinensis; type=EST; length=692bp
GCTTACATGGCCTTTTCCGTGTAAGAGGTTTCACCCAGGATGATGCTCAC
ATATTTTGTTTAGAGGATCAAATAAAAGATGAAATTAGGGCTGTTTTAGA
TCTTACAGAAGAGATATTACTACAATTTGGTTTCAACAAATATGAAGTGA
ACCTCTCAACTAAACCAGAGAAAGCTGTTGGAGGTAATGATATATGGGAG
AAGGCAACATCTGCCCTTAGAGACGCTTTGGATGATAAGGGATGGGATTA
CCAAATTGATGAAGGTGGTGGTGCGTTTTATGGTCCAAAGATTGATCTTA
AGATTGAGGATGCTCTTGGAAGGAAGTGGCAGTGCTCAACCATACAGGTT
GATTTCAATTTACCACAGCGATTTGACATTGTGTATGTTGACTCAAACTC
AGAAAAGAAGCGTCCCATCATGATCCACAGAGCAGTGCTTGGATCCTTGG
AACGTTTCTTTGGAGTTCTAATAGAGCATTATGCTGGGGATTTTCCTTTG
TGGCTTTCTCCAATCCAAGCTCGTGTTTTACCAGTTACAGACACACAGCT
TGAGTACTGTAATGAGGTGATAAAAAAACTGAAAACTAATGGTATACGAG
CTGAAATTTGCCATGGTGAGCGCCTGCCTAAGCTCATTAGAAATGCAGAG
AAACAGAAAATTCCATTAATGGCAGTCGTTGGAGCTAAGGAA
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