CF509942

Overview
NameCF509942
Unique NameCF509942
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11406 contig Csv1_Contig11406:191..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509942 vs. ExPASy Swiss-Prot
Match: FAR1_ARATH (Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 2.427e-84
Identity = 140/189 (74.07%), Postives = 168/189 (88.89%), Query Frame = 2
Query:   11 LYEDRKRWVPTYMGDTFLAGMSTTQRSESMNSFFDKYIHKKITLKEFVKQYGNILQNRYEEEAIADFDTWHKQPALKSPSPWEKQMSTVYTHTIFKKFQVEVLGVVGCHPKKSSEDGTIVTYKVQDCEKEEDFMVTWNELKSEVSCFCCLFEYKGFLCRHAMIVLQICGRSSIPPQYILKGGPKMQKAG 577
            L+E R++WVPT+M D FLAGMST+QRSES+NSFFDKYIHKKITLKEF++QYG ILQNRYEEE++ADFDT HKQPALKSPSPWEKQM+T YTHTIFKKFQVEVLGVV CHP+K  ED  + T++VQDCEK++DF+VTW++ KSE+ CFC +FEYKGFLCRHA+++LQ+CG +SIPPQYILK   K  K+G
Sbjct:  423 LHEHRQKWVPTFMSDVFLAGMSTSQRSESVNSFFDKYIHKKITLKEFLRQYGVILQNRYEEESVADFDTCHKQPALKSPSPWEKQMATTYTHTIFKKFQVEVLGVVACHPRKEKEDENMATFRVQDCEKDDDFLVTWSKTKSELCCFCRMFEYKGFLCRHALMILQMCGFASIPPQYILKRWTKDAKSG 611          
BLAST of CF509942 vs. ExPASy Swiss-Prot
Match: FHY3_ARATH (Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana GN=FHY3 PE=1 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 1.580e-67
Identity = 117/189 (61.90%), Postives = 148/189 (78.31%), Query Frame = 2
Query:    8 SLYEDRKRWVPTYMGDTFLAGMSTTQRSESMNSFFDKYIHKKITLKEFVKQYGNILQNRYEEEAIADFDTWHKQPALKSPSPWEKQMSTVYTHTIFKKFQVEVLGVVGCHPKKSSEDGTIVTYKVQDCEKEEDFMVTWNELKSEVSCFCCLFEYKGFLCRHAMIVLQICGRSSIPPQYILKGGPKMQKA 574
            SLYEDRK+W PTYM D  LAGMST+QR++S+N+FFDKY+HKK +++EFVK Y  +LQ+R EEEA AD + W+KQPA+KSPSP+EK +S VYT  +FKKFQ+EVLG + C P++ + D T  T++VQD E  +DFMVTWN+ K+EVSC C LFEYKG+LCRH + VLQ C  SSIP QYILK   K  K+
Sbjct:  431 SLYEDRKKWAPTYMTDVLLAGMSTSQRADSINAFFDKYMHKKTSVQEFVKVYDTVLQDRCEEEAKADSEMWNKQPAMKSPSPFEKSVSEVYTPAVFKKFQIEVLGAIACSPREENRDATCSTFRVQDFENNQDFMVTWNQTKAEVSCICRLFEYKGYLCRHTLNVLQCCHLSSIPSQYILKRWTKDAKS 619          
BLAST of CF509942 vs. ExPASy Swiss-Prot
Match: FRS1_ARATH (Protein FAR1-RELATED SEQUENCE 1 OS=Arabidopsis thaliana GN=FRS1 PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 6.020e-59
Identity = 113/192 (58.85%), Postives = 138/192 (71.88%), Query Frame = 2
Query:    5 RSLYEDRKRWVPTYMGDTFLAGMSTTQRSESMNSFFDKYIHKKITLKEFVKQYGNILQNRYEEEAIADFDTWHKQPALKSPSPWEKQMSTVYTHTIFKKFQVEVLGVVGCHPKKSSEDGTI--VTYKVQDCEKEEDFMVTWNELKSEVSCFCCLFEYKGFLCRHAMIVLQICGRSSIPPQYILKGGPKMQKA 574
            +SLYEDR+ WVP YM D  LAGM T QRS+S+NS  DKYI +K T K F++QY  ++Q RYEEE  ++ +T +KQP LKSPSP+ KQM+ VYT  +FKKFQVEVLG V CHPKK SE+  +   T++VQD E+   F+V WN   SEV C C LFE KGFLCRHAMIVLQ+ G  SIP QY+LK   K  K+
Sbjct:  304 QSLYEDREYWVPVYMKDVSLAGMCTAQRSDSVNSGLDKYIQRKTTFKAFLEQYKKMIQERYEEEEKSEIETLYKQPGLKSPSPFGKQMAEVYTREMFKKFQVEVLGGVACHPKKESEEDGVNKRTFRVQDYEQNRSFVVVWNSESSEVVCSCRLFELKGFLCRHAMIVLQMSGELSIPSQYVLKRWTKDAKS 495          
BLAST of CF509942 vs. ExPASy Swiss-Prot
Match: FRS4_ARATH (Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana GN=FRS4 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.936e-57
Identity = 102/182 (56.04%), Postives = 137/182 (75.27%), Query Frame = 2
Query:    5 RSLYEDRKRWVPTYMGDTFLAGMSTTQRSESMNSFFDKYIHKKITLKEFVKQYGNILQNRYEEEAIADFDTWHKQPALKSPSPWEKQMSTVYTHTIFKKFQVEVLGVVGCHPKKSSEDGTIVTYKVQDCEKEEDFMVTWNELKSEVSCFCCLFEYKGFLCRHAMIVLQICGRSSIPPQYILK 550
            RSLYE+RK W PT+M     AG+S   RSES+NS FD+Y+H + +LKEF++ YG +L++RYEEEA ADFD WH+ P LKSPSP+EKQM  VY+H IF++FQ+EVLG   CH  K SE+GT  TY V+D + E+ ++V W+E KS++ C C  FEYKG+LCRHA++VLQ+ G  +IP  Y+L+
Sbjct:  358 RSLYEERKFWAPTFMRGITFAGLSMRCRSESVNSLFDRYVHPETSLKEFLEGYGLMLEDRYEEEAKADFDAWHEAPELKSPSPFEKQMLLVYSHEIFRRFQLEVLGAAACHLTKESEEGT--TYSVKDFDDEQKYLVDWDEFKSDIYCSCRSFEYKGYLCRHAIVVLQMSGVFTIPINYVLQ 537          
BLAST of CF509942 vs. ExPASy Swiss-Prot
Match: FRS2_ARATH (Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=FRS2 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 8.733e-42
Identity = 84/180 (46.67%), Postives = 114/180 (63.33%), Query Frame = 2
Query:   11 LYEDRKRWVPTYMGDTFLAGMSTTQRSESMNSFFDKYIHKKITLKEFVKQYGNILQNRYEEEAIADFDTWHKQPALKSPSPWEKQMSTVYTHTIFKKFQVEVLGVVGCHPKKSSEDGTIVTYKVQDCEKEEDFMVTWNELKSEVSCFCCLFEYKGFLCRHAMIVLQICGRSSIPPQYILK 550
            L+ DRK+WVP Y     LAG+S  +RS S+ S FDKY++ + T K+F + Y   LQ R + EA  D +   KQP L+S   +EKQ+S +YT   FKKFQ EV GVV C  +K  EDGT   ++++D E+ ++F V  N    +  C C LFEY+GFLC+HA++VLQ    S +P QYILK
Sbjct:  367 LFRDRKKWVPHYFHGICLAGLSGPERSGSIASHFDKYMNSEATFKDFFELYMKFLQYRCDVEAKDDLEYQSKQPTLRSSLAFEKQLSLIYTDAAFKKFQAEVPGVVSCQLQKEREDGTTAIFRIEDFEERQNFFVALNNELLDACCSCHLFEYQGFLCKHAILVLQSADVSRVPSQYILK 546          
BLAST of CF509942 vs. ExPASy Swiss-Prot
Match: FRS5_ARATH (Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.334e-41
Identity = 78/183 (42.62%), Postives = 117/183 (63.93%), Query Frame = 2
Query:    5 RSLYEDRKRWVPTYMGDTFLAGMSTTQRSESMNSFFDKYIHKKITLKEFVKQYGNILQNRYEEEAIADFDTWHKQPALKSPSPWEKQMSTVYTHTIFKKFQVEVLGVVGCHPKKSSEDGTIVTYKVQDC-EKEEDFMVTWNELKSEVSCFCCLFEYKGFLCRHAMIVLQICGRSSIPPQYILK 550
            +++Y DR++WVP Y+ DTF A MS T RS+S+NS+FD YI+    L +F K Y   L++R E+E  AD+DT +  P LK+PSP EKQ S +YT  +F +FQ E++G +     K+ +DG +VTY+V    E  +   V +N L+   +C C +FE+ G +CRH + V ++    ++PP YILK
Sbjct:  445 QAIYSDRRQWVPVYLRDTFFADMSLTHRSDSINSYFDGYINASTNLSQFFKLYEKALESRLEKEVKADYDTMNSPPVLKTPSPMEKQASELYTRKLFMRFQEELVGTLTFMASKADDDGDLVTYQVAKYGEAHKAHFVKFNVLEMRANCSCQMFEFSGIICRHILAVFRVTNLLTLPPYYILK 627          
BLAST of CF509942 vs. ExPASy Swiss-Prot
Match: FRS6_ARATH (Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.493e-33
Identity = 74/190 (38.95%), Postives = 109/190 (57.37%), Query Frame = 2
Query:    5 RSLYEDRKRWVPTYMGDTFLAGMSTTQRSESMNSFFDKYIHKKITLKEFVKQYGNILQNRYEEEAIADFDTWHKQPA-LKSPSPWEKQMSTVYTHTIFKKFQVEVLGVVGCHPKKSSE-DGTIVTYKVQDCEKEE-------DFMVTWNELKSEVSCFCCLFEYKGFLCRHAMIVLQICGRSSIPPQYIL 547
            RSLYE+R +W P Y+ DTF AG++     E++  FF++Y+HK+  LKEF+ +Y   LQ ++ EE ++D ++     A LK+   +E Q+S +YT  +FKKFQ+EV  +  C        DG  V + V++  + E       DF V +N    EV C C  F + G+LCRHA+ VL   G   IP +YIL
Sbjct:  441 RSLYEERAKWAPVYLKDTFFAGIAAAHPGETLKPFFERYVHKQTPLKEFLDKYELALQKKHREETLSDIESQTLNTAELKTKCSFETQLSRIYTRDMFKKFQIEVEEMYSCFSTTQVHVDGPFVIFLVKERVRGESSRREIRDFEVLYNRSVGEVRCICSCFNFYGYLCRHALCVLNFNGVEEIPLRYIL 630          
BLAST of CF509942 vs. ExPASy Swiss-Prot
Match: FRS3_ARATH (Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 6.080e-29
Identity = 65/182 (35.71%), Postives = 104/182 (57.14%), Query Frame = 2
Query:    8 SLYEDRKRWVPTYMGDTFLAGMSTTQRSESMNSFFDKYIHKKITLKEFVKQYGNILQNRYEEEAIADFDTWHKQPALKSPSPWEKQMSTVYTHTIFKKFQVEVLGVVGCHPKKSSEDGTIVTYKVQDCEKE-EDFMVTWNELKSEVSCFCCLFEYKGFLCRHAMIVLQICGRSSIPPQYILK 550
            SLY  R +WVP Y  D+F A +  +Q      SFFD Y++++ TL  F + Y   +++ +E E  AD DT +  P LK+PSP E Q + ++T  IF KFQ E++        +  +DGT  T++V + E + + ++VT+   +   +C C +FE+ G LCRH + V  +    ++PP YIL+
Sbjct:  393 SLYNARAQWVPVYFRDSFFAAVFPSQGYSG--SFFDGYVNQQTTLPMFFRLYERAMESWFEMEIEADLDTVNTPPVLKTPSPMENQAANLFTRKIFGKFQEELVETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRANCSCQMFEHSGILCRHVLTVFTVTNILTLPPHYILR 572          

HSP 2 Score: 21.557 bits (44), Expect = 6.080e-29
Identity = 8/21 (38.10%), Postives = 12/21 (57.14%), Query Frame = 1
Query:  529 PTSVYFERWTKDAKSRLLISE 591
            P      RWT++AKS + + E
Sbjct:  566 PPHYILRRWTRNAKSMVELDE 586          
BLAST of CF509942 vs. ExPASy Swiss-Prot
Match: FRS9_ARATH (Protein FAR1-RELATED SEQUENCE 9 OS=Arabidopsis thaliana GN=FRS9 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.467e-28
Identity = 62/190 (32.63%), Postives = 106/190 (55.79%), Query Frame = 2
Query:    5 RSLYEDRKRWVPTYMGDTFLAGMSTTQRSESMNSFFDKYIHKKITLKEFVKQYGNILQNRYEEEAIADFDTWHKQPALKSPSPWEKQMSTVYTHTIFKKFQVEVLGVVGCHPKKSSEDGTIVTYKVQDC-EKEEDFMVTWNELKSEVSCFCCLFEYKGFLCRHAMIVLQICGRSSIPPQYILKGGPKMQK 571
            +S+Y  R++WV  ++ DTF   +ST + S  +NSFF  ++    T++  +KQY   + +  E+E  AD++  +  P +K+PSP EKQ +++YT   F KFQ E +  +       S+ GT  TY+V    E  +   V+++ L+ + +C C +FEY G +CRH + V       ++P +Y+L+   K  K
Sbjct:  196 QSIYNARQQWVRVFIRDTFYGELSTNEGSSILNSFFQGFVDASTTMQMLIKQYEKAIDSWREKELKADYEATNSTPVMKTPSPMEKQAASLYTRAAFIKFQEEFVETLAIPANIISDSGTHTTYRVAKFGEVHKGHTVSFDSLEVKANCSCQMFEYSGIICRHILAVFSAKNVLALPSRYLLRRWTKEAK 385          
BLAST of CF509942 vs. ExPASy Swiss-Prot
Match: FRS8_ARATH (Protein FAR1-RELATED SEQUENCE 8 OS=Arabidopsis thaliana GN=FRS8 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.599e-27
Identity = 67/189 (35.45%), Postives = 106/189 (56.08%), Query Frame = 2
Query:    5 RSLYEDRKRWVPTYMGDTFLAGMSTTQRSESMNSF-FDKYIHKKITLKEFVKQYGNILQNRYEEEAIADFDTWHKQPALKSPSPWEKQMSTVYTHTIFKKFQVEVLGVVGCH-PKKSSEDGTIVTYKVQDCE--KEEDFMVTW-NELKSEVSCFCCL--FEYKGFLCRHAMIVLQICGRSSIPPQYILK 550
            R +++DR+ W P Y+ DTFLAG  T         F F  Y+H+  +L+EF++ Y + L  +Y  EA+ D ++    P LK+  P+E QM+ V+T  IF++FQ EV  +  C    +   +G+  +Y V++ E  K  DF V +     ++V CFC    F + G+ CRH +++L   G   +PPQYIL+
Sbjct:  437 RDMFQDRELWAPVYLKDTFLAGALTFPLGNVAAPFIFSGYVHENTSLREFLEGYESFLDKKYTREALCDSESLKLIPKLKTTHPYESQMAKVFTMEIFRRFQDEVSAMSSCFGVTQVHSNGSASSYVVKEREGDKVRDFEVIYETSAAAQVRCFCVCGGFSFNGYQCRHVLLLLSHNGLQEVPPQYILQ 625          
The following BLAST results are available for this feature:
BLAST of CF509942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
FAR1_ARATH2.427e-8474.07Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis... [more]
FHY3_ARATH1.580e-6761.90Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidops... [more]
FRS1_ARATH6.020e-5958.85Protein FAR1-RELATED SEQUENCE 1 OS=Arabidopsis tha... [more]
FRS4_ARATH1.936e-5756.04Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis tha... [more]
FRS2_ARATH8.733e-4246.67Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis tha... [more]
FRS5_ARATH4.334e-4142.62Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis tha... [more]
FRS6_ARATH1.493e-3338.95Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis tha... [more]
FRS3_ARATH6.080e-2935.71Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis tha... [more]
FRS9_ARATH2.467e-2832.63Protein FAR1-RELATED SEQUENCE 9 OS=Arabidopsis tha... [more]
FRS8_ARATH1.599e-2735.45Protein FAR1-RELATED SEQUENCE 8 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-454 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509942 ID=CF509942; Name=CF509942; organism=Citrus sinensis; type=EST; length=594bp
GTTTCGATCATTGTATGAAGATCGTAAGAGGTGGGTGCCTACTTACATGG
GGGATACTTTTTTGGCTGGAATGTCTACAACTCAGCGCTCTGAAAGTATG
AACTCTTTCTTTGATAAATACATCCATAAGAAAATTACCTTGAAAGAGTT
TGTGAAACAATATGGGAATATTCTACAGAATAGATATGAAGAGGAAGCCA
TTGCAGATTTTGATACATGGCACAAACAGCCAGCTTTAAAATCTCCTTCG
CCTTGGGAAAAACAAATGTCAACAGTTTACACACATACGATATTTAAGAA
ATTCCAAGTTGAAGTTTTGGGTGTAGTTGGCTGCCATCCTAAAAAATCAA
GTGAAGATGGAACCATTGTAACATATAAAGTTCAAGACTGTGAAAAGGAA
GAAGACTTTATGGTTACTTGGAATGAATTGAAGTCGGAGGTCTCTTGTTT
CTGTTGTCTCTTTGAATACAAAGGGTTTCTTTGTAGACATGCAATGATTG
TTCTCCAGATATGTGGTCGTTCGAGCATCCCACCTCAGTATATTTTGAAA
GGTGGACCAAAGATGCAAAAAGCAGGCTGTTGATATCTGAAGGT
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