CF509944

Overview
NameCF509944
Unique NameCF509944
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF509944_ssr154 microsatellite CF509944_ssr154:154..165. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF509944 vs. ExPASy Swiss-Prot
Match: Y2239_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.388e-55
Identity = 107/135 (79.26%), Postives = 118/135 (87.41%), Query Frame = 3
Query:  189 TLSYEPRNHEVDALVSIKRALNDPHGVLNNWDEDSVDPCSWAMITCSPENLVIGLGAPSQSLSGTLSGSIGNLTNLRQVLLQNNNISGGIPPQLGSLPKLQTLDLSNNRLSGVIPRSFGQLNSLQYLRLNNNSLS 593
            +LS EPRN EV+AL++IK  L+DPHGV  NWDE SVDPCSW MI+CS +NLVIGLGAPSQSLSGTLSGSIGNLTNLRQV LQNNNISG IPP++ SLPKLQTLDLSNNR SG IP S  QL++LQYLRLNNNSLS
Sbjct:   25 SLSSEPRNPEVEALINIKNELHDPHGVFKNWDEFSVDPCSWTMISCSSDNLVIGLGAPSQSLSGTLSGSIGNLTNLRQVSLQNNNISGKIPPEICSLPKLQTLDLSNNRFSGEIPGSVNQLSNLQYLRLNNNSLS 159          
BLAST of CF509944 vs. ExPASy Swiss-Prot
Match: Y5457_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.651e-32
Identity = 72/134 (53.73%), Postives = 91/134 (67.91%), Query Frame = 3
Query:  192 LSYEPRNHEVDALVSIKRALNDPHGVLNNWDEDSVDPCSWAMITCSPENLVIGLGAPSQSLSGTLSGSIGNLTNLRQVLLQNNNISGGIPPQLGSLPKLQTLDLSNNRLSGVIPRSFGQLNSLQYLRLNNNSLS 593
            LS +  N+EV AL+S+K  + D   VL+ WD +SVDPC+W M+ CS E  V+ L   S+ LSG LS SIG LT+L  +LLQNN ++G IP +LG L +L+TLDLS NR SG IP S G L  L YLRL+ N LS
Sbjct:   31 LSPKGVNYEVAALMSVKNKMKDEKEVLSGWDINSVDPCTWNMVGCSSEGFVVSLEMASKGLSGILSTSIGELTHLHTLLLQNNQLTGPIPSELGQLSELETLDLSGNRFSGEIPASLGFLTHLNYLRLSRNLLS 164          
BLAST of CF509944 vs. ExPASy Swiss-Prot
Match: BAK1_ARATH (BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 6.076e-27
Identity = 62/128 (48.44%), Postives = 86/128 (67.19%), Query Frame = 3
Query:  210 NHEVDALVSIKRALNDPHGVLNNWDEDSVDPCSWAMITCSPENLVIGLGAPSQSLSGTLSGSIGNLTNLRQVLLQNNNISGGIPPQLGSLPKLQTLDLSNNRLSGVIPRSFGQLNSLQYLRLNNNSLS 593
            N E DAL ++K +L DP+ VL +WD   V PC+W  +TC+ +N V  +   + +LSG L   +G L NL+ + L +NNI+G IP QLG+L +L +LDL  N LSG IP + G+L  L++LRLNNNSLS
Sbjct:   26 NAEGDALSALKNSLADPNKVLQSWDATLVTPCTWFHVTCNSDNSVTRVDLGNANLSGQLVMQLGQLPNLQYLELYSNNITGTIPEQLGNLTELVSLDLYLNNLSGPIPSTLGRLKKLRFLRLNNNSLS 153          
BLAST of CF509944 vs. ExPASy Swiss-Prot
Match: SERK4_ARATH (Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.496e-25
Identity = 63/131 (48.09%), Postives = 85/131 (64.89%), Query Frame = 3
Query:  210 NHEVDALVSIKRALN--DP-HGVLNNWDEDSVDPCSWAMITCSPENLVIGLGAPSQSLSGTLSGSIGNLTNLRQVLLQNNNISGGIPPQLGSLPKLQTLDLSNNRLSGVIPRSFGQLNSLQYLRLNNNSLS 593
            N E DAL  +K +L+  DP + VL +WD   V PC+W  +TC+PEN V  +   +  LSG L   +G L NL+ + L +NNI+G IP +LG L +L +LDL  N +SG IP S G+L  L++LRLNNNSLS
Sbjct:   30 NAEGDALTQLKNSLSSGDPANNVLQSWDATLVTPCTWFHVTCNPENKVTRVDLGNAKLSGKLVPELGQLLNLQYLELYSNNITGEIPEELGDLVELVSLDLYANSISGPIPSSLGKLGKLRFLRLNNNSLS 160          
BLAST of CF509944 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.496e-25
Identity = 61/128 (47.66%), Postives = 84/128 (65.62%), Query Frame = 3
Query:  210 NHEVDALVSIKRALNDPHGVLNNWDEDSVDPCSWAMITCSPENLVIGLGAPSQSLSGTLSGSIGNLTNLRQVLLQNNNISGGIPPQLGSLPKLQTLDLSNNRLSGVIPRSFGQLNSLQYLRLNNNSLS 593
            N E DAL +++  L DP+ VL +WD   V+PC+W  +TC+ EN VI +   +  LSG L   +G L NL+ + L +NNI+G IP  LG+L  L +LDL  N  SG IP S G+L+ L++LRLNNNSL+
Sbjct:   27 NLEGDALHTLRVTLVDPNNVLQSWDPTLVNPCTWFHVTCNNENSVIRVDLGNAELSGHLVPELGVLKNLQYLELYSNNITGPIPSNLGNLTNLVSLDLYLNSFSGPIPESLGKLSKLRFLRLNNNSLT 154          
BLAST of CF509944 vs. ExPASy Swiss-Prot
Match: SERK2_ARATH (Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.553e-25
Identity = 60/128 (46.88%), Postives = 83/128 (64.84%), Query Frame = 3
Query:  210 NHEVDALVSIKRALNDPHGVLNNWDEDSVDPCSWAMITCSPENLVIGLGAPSQSLSGTLSGSIGNLTNLRQVLLQNNNISGGIPPQLGSLPKLQTLDLSNNRLSGVIPRSFGQLNSLQYLRLNNNSLS 593
            N E DAL S++  L DP+ VL +WD   V+PC+W  +TC+ EN VI +   +  LSG L   +G L NL+ + L +NNI+G +P  LG+L  L +LDL  N  +G IP S G+L  L++LRLNNNSL+
Sbjct:   30 NMEGDALHSLRANLVDPNNVLQSWDPTLVNPCTWFHVTCNNENSVIRVDLGNADLSGQLVPQLGQLKNLQYLELYSNNITGPVPSDLGNLTNLVSLDLYLNSFTGPIPDSLGKLFKLRFLRLNNNSLT 157          
BLAST of CF509944 vs. ExPASy Swiss-Prot
Match: SERK5_ARATH (Somatic embryogenesis receptor kinase 5 OS=Arabidopsis thaliana GN=SERK5 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.072e-23
Identity = 58/129 (44.96%), Postives = 83/129 (64.34%), Query Frame = 3
Query:  216 EVDALVSIKRALND---PHGVLNNWDEDSVDPCSWAMITCSPENLVIGLGAPSQSLSGTLSGSIGNLTNLRQVLLQNNNISGGIPPQLGSLPKLQTLDLSNNRLSGVIPRSFGQLNSLQYLRLNNNSLS 593
            +VDAL++++ +L+     + +L +W+   V PCSW  +TC+ EN V  L   S +LSG L   +  L NL+ + L NNNI+G IP +LG L +L +LDL  N +SG IP S G+L  L++LRL NNSLS
Sbjct:   27 QVDALIALRSSLSSGDHTNNILQSWNATHVTPCSWFHVTCNTENSVTRLDLGSANLSGELVPQLAQLPNLQYLELFNNNITGEIPEELGDLMELVSLDLFANNISGPIPSSLGKLGKLRFLRLYNNSLS 155          
BLAST of CF509944 vs. ExPASy Swiss-Prot
Match: Y5129_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.311e-21
Identity = 48/124 (38.71%), Postives = 77/124 (62.10%), Query Frame = 3
Query:  222 DALVSIKRALNDPHGVLNNWDEDSVDPCSWAMITCSPENLVIGLGAPSQSLSGTLSGSIGNLTNLRQVLLQNNNISGGIPPQLGSLPKLQTLDLSNNRLSGVIPRSFGQLNSLQYLRLNNNSLS 593
            DAL +++ +L      L++W+++ V+PC+W+ + C  +N V  L     + SGTLS  +G L NL+ + L+ N I+G IP   G+L  L +LDL +N+L+G IP + G L  LQ+L L+ N L+
Sbjct:   32 DALFALRISLRALPNQLSDWNQNQVNPCTWSQVICDDKNFVTSLTLSDMNFSGTLSSRVGILENLKTLTLKGNGITGEIPEDFGNLTSLTSLDLEDNQLTGRIPSTIGNLKKLQFLTLSRNKLN 155          
BLAST of CF509944 vs. ExPASy Swiss-Prot
Match: Y1634_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g63430 OS=Arabidopsis thaliana GN=At1g63430 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.395e-20
Identity = 49/130 (37.69%), Postives = 79/130 (60.77%), Query Frame = 3
Query:  210 NHEVDALVSIKRAL-NDPHGVLNNWDEDSVDPCSWAMITCSP-ENLVIGLGAPSQSLSGTLSGSIGNLTNLRQVLLQNNNISGGIPPQLGSLPKLQTLDLSNNRLSGVIPRSFGQLNSLQYLRLNNNSLS 593
            ++EV AL   K A+  DP  V++NW++ + DPC W  I CSP ++ VI +   + S+ G L+  +G +T L++++L  N + G IP ++G+L  L+ LDL NN L G IP   G L+ +  + L +N L+
Sbjct:   25 SNEVQALRRFKEAIYEDPLLVMSNWNDPNSDPCDWTGIYCSPSKDHVIKINISASSIKGFLAPELGQITYLQELILHGNILIGTIPKEIGNLKNLKILDLGNNHLMGPIPAEIGSLSGIMIINLQSNGLT 154          
BLAST of CF509944 vs. ExPASy Swiss-Prot
Match: Y3804_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.227e-19
Identity = 55/129 (42.64%), Postives = 74/129 (57.36%), Query Frame = 3
Query:  210 NHEVDALVSIKRALNDPHGVLNNWDEDSVDPCSWAMITCSPE-NLVIGLGAPSQSLSGTLSGSIGNLTNLRQVLLQNNNISGGIPPQLGSLPKLQTLDLSNNRLSGVIPRSFGQLNSLQYLRLNNNSLS 593
            N +V  L+  K  LNDP   L +W ED   PCSW+ + C+P+ + VI L     +L+G ++  I  L  L+ + L NNN +G I   L +   LQ LDLS+N LSG IP S G + SLQ+L L  NS S
Sbjct:   34 NDDVLGLIVFKSDLNDPFSHLESWTEDDNTPCSWSYVKCNPKTSRVIELSLDGLALTGKINRGIQKLQRLKVLSLSNNNFTGNINA-LSNNNHLQKLDLSHNNLSGQIPSSLGSITSLQHLDLTGNSFS 161          
The following BLAST results are available for this feature:
BLAST of CF509944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
Y2239_ARATH1.388e-5579.26Probable LRR receptor-like serine/threonine-protei... [more]
Y5457_ARATH1.651e-3253.73Probable LRR receptor-like serine/threonine-protei... [more]
BAK1_ARATH6.076e-2748.44BRASSINOSTEROID INSENSITIVE 1-associated receptor ... [more]
SERK4_ARATH1.496e-2548.09Somatic embryogenesis receptor kinase 4 OS=Arabido... [more]
SERK1_ARATH1.496e-2547.66Somatic embryogenesis receptor kinase 1 OS=Arabido... [more]
SERK2_ARATH2.553e-2546.88Somatic embryogenesis receptor kinase 2 OS=Arabido... [more]
SERK5_ARATH1.072e-2344.96Somatic embryogenesis receptor kinase 5 OS=Arabido... [more]
Y5129_ARATH1.311e-2138.71Probable LRR receptor-like serine/threonine-protei... [more]
Y1634_ARATH9.395e-2037.69Probable LRR receptor-like serine/threonine-protei... [more]
Y3804_ARATH1.227e-1942.64Probably inactive leucine-rich repeat receptor-lik... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-456 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_C07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509944 ID=CF509944; Name=CF509944; organism=Citrus sinensis; type=EST; length=593bp
TGATTTTTGCCTAGGCAGTTCAGTTTCATGTTGTGTTTGTGAAACAAAGT
TTGTTCATTTATTGATTCAATGATATCACAATACCACCAGCTCTATAGCT
TTACTTACCGGCTAGCTTTCTAAATACCATGGCTATCTTCAAGCTCTTTC
TTCTCTTCTTCTTCTTTCTTTCCTTTTTCTCTCTTGCTACTCTCTCTTAT
GAGCCTAGAAACCATGAAGTGGATGCTTTGGTGAGCATAAAGAGAGCATT
GAATGATCCTCACGGAGTGTTAAACAACTGGGATGAAGACTCTGTGGATC
CTTGTAGTTGGGCTATGATAACTTGCTCGCCTGAGAATCTTGTTATAGGC
CTGGGAGCACCAAGCCAGTCTCTTTCTGGAACTTTGTCCGGATCAATAGG
AAATCTCACCAATCTTCGCCAAGTATTATTGCAAAACAACAACATTTCTG
GTGGAATCCCACCTCAGCTTGGCTCTCTTCCAAAACTTCAAACTTTGGAT
CTCTCAAACAACAGACTCTCTGGTGTAATCCCACGCTCTTTTGGGCAATT
GAATAGTCTTCAATATCTGAGGCTCAACAACAATAGCTTGAGT
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