CF509950

Overview
NameCF509950
Unique NameCF509950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13383 contig Csv1_Contig13383:767..1448. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509950 vs. ExPASy Swiss-Prot
Match: COPB1_ORYSJ (Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica GN=Os11g0174000 PE=2 SV=1)

HSP 1 Score: 423.705 bits (1088), Expect = 4.372e-118
Identity = 209/226 (92.48%), Postives = 217/226 (96.02%), Query Frame = 3
Query:    3 LKAKAQISHAQPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFVKEGDDANKLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSA 680
            +KAKAQISHAQPDDLIDFYHLKSR+GMSQLELED VQDDLK ATGEF K+ DDAN+LNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLV+RPQNYTLAPESSKQI+ANIKVSSTETGVIFGNIVYETSNV+ER+VVVLNDIHIDIMDYISPA C D AFR MWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLT PSA
Sbjct:  662 MKAKAQISHAQPDDLIDFYHLKSRRGMSQLELEDAVQDDLKAATGEFTKDADDANRLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVDRPQNYTLAPESSKQIRANIKVSSTETGVIFGNIVYETSNVMERSVVVLNDIHIDIMDYISPATCADVAFRNMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTPPSA 887          
BLAST of CF509950 vs. ExPASy Swiss-Prot
Match: COPB2_ORYSJ (Coatomer subunit beta-2 OS=Oryza sativa subsp. japonica GN=Os01g0281400 PE=3 SV=1)

HSP 1 Score: 416.001 bits (1068), Expect = 9.116e-116
Identity = 205/226 (90.71%), Postives = 215/226 (95.13%), Query Frame = 3
Query:    3 LKAKAQISHAQPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFVKEGDDANKLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSA 680
            +KAKAQISHAQPDDLIDFYHLKSR+GMSQLELEDEVQDDLK ATG F K+  DAN+LNRILQLTGFSDPVYAEAYVTVHHYDIVLDVT+INRTKETLQNLCLELATMGDLKLV+RPQNYTLAPESSKQI+ANIKVSSTETGVIFGNIVYETSNV+ER+VVVLNDIHIDIMDYISPA C D  FR MWAEFEWENKVAVNTVIQ+EKEFLDHIIKSTNMKCLT PSA
Sbjct:  660 MKAKAQISHAQPDDLIDFYHLKSRRGMSQLELEDEVQDDLKAATGGFTKDAYDANRLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTIINRTKETLQNLCLELATMGDLKLVDRPQNYTLAPESSKQIRANIKVSSTETGVIFGNIVYETSNVMERSVVVLNDIHIDIMDYISPATCADVTFRNMWAEFEWENKVAVNTVIQNEKEFLDHIIKSTNMKCLTPPSA 885          
BLAST of CF509950 vs. ExPASy Swiss-Prot
Match: COPB2_ARATH (Coatomer subunit beta-2 OS=Arabidopsis thaliana GN=At4g31490 PE=1 SV=2)

HSP 1 Score: 414.075 bits (1063), Expect = 3.464e-115
Identity = 204/226 (90.27%), Postives = 216/226 (95.58%), Query Frame = 3
Query:    3 LKAKAQISHAQPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFVKEGDDANKLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSA 680
            LKAK Q +HAQPDDLIDF+HLKSRKGMSQLELED+VQDDLKRATGEF K+ +DANKLNRILQLTGFSDPVYAEAYVTVHHYDI L+VTVINRTKETLQNLCLELATMGDLKLVERPQNY+LAPE S QIKANIKVSSTETGVIFGNIVYETSNV+ER VVVLNDIHIDIMDYISPAVC++ AFRTMWAEFEWENKVAVNT IQ+E+EFLDHIIKSTNMKCLTAPSA
Sbjct:  658 LKAKTQTTHAQPDDLIDFFHLKSRKGMSQLELEDQVQDDLKRATGEFTKDENDANKLNRILQLTGFSDPVYAEAYVTVHHYDIALEVTVINRTKETLQNLCLELATMGDLKLVERPQNYSLAPERSMQIKANIKVSSTETGVIFGNIVYETSNVMERNVVVLNDIHIDIMDYISPAVCSEVAFRTMWAEFEWENKVAVNTTIQNEREFLDHIIKSTNMKCLTAPSA 883          
BLAST of CF509950 vs. ExPASy Swiss-Prot
Match: COPB1_ARATH (Coatomer subunit beta-1 OS=Arabidopsis thaliana GN=At4g31480 PE=1 SV=2)

HSP 1 Score: 414.075 bits (1063), Expect = 3.464e-115
Identity = 204/226 (90.27%), Postives = 216/226 (95.58%), Query Frame = 3
Query:    3 LKAKAQISHAQPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFVKEGDDANKLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSA 680
            LKAK Q +HAQPDDLIDF+HLKSRKGMSQLELED+VQDDLKRATGEF K+ +DANKLNRILQLTGFSDPVYAEAYVTVHHYDI L+VTVINRTKETLQNLCLELATMGDLKLVERPQNY+LAPE S QIKANIKVSSTETGVIFGNIVYETSNV+ER VVVLNDIHIDIMDYISPAVC++ AFRTMWAEFEWENKVAVNT IQ+E+EFLDHIIKSTNMKCLTAPSA
Sbjct:  658 LKAKTQTTHAQPDDLIDFFHLKSRKGMSQLELEDQVQDDLKRATGEFTKDENDANKLNRILQLTGFSDPVYAEAYVTVHHYDIALEVTVINRTKETLQNLCLELATMGDLKLVERPQNYSLAPERSMQIKANIKVSSTETGVIFGNIVYETSNVMERNVVVLNDIHIDIMDYISPAVCSEVAFRTMWAEFEWENKVAVNTTIQNEREFLDHIIKSTNMKCLTAPSA 883          
BLAST of CF509950 vs. ExPASy Swiss-Prot
Match: COPB_CHICK (Coatomer subunit beta OS=Gallus gallus GN=COPB1 PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 9.244e-68
Identity = 139/220 (63.18%), Postives = 159/220 (72.27%), Query Frame = 3
Query:   33 QPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFV-KEGDD--ANKLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVL-ERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSA 680
            QPDD I F  L ++  MS  E  D+ Q  L  A G    KE  D  A+KLN++ QLTGFSDPVYAEAYV V+ YDIVLDV V+N+T +TLQN  LELAT+GDLKLVE+P   TLAP     IKAN+KV+STE G+IFGNIVY+ S    +R  VVL+DIHIDIMDYI PA CTDA FR MWAEFEWENKV VNT I D  E+L HI+KSTNMKCLT   A
Sbjct:  666 QPDDPISFMQLTAKNEMSSKE--DQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLTGFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPASCTDAEFRQMWAEFEWENKVTVNTNIIDLNEYLQHILKSTNMKCLTPEKA 883          
BLAST of CF509950 vs. ExPASy Swiss-Prot
Match: COPB_RAT (Coatomer subunit beta OS=Rattus norvegicus GN=Copb1 PE=1 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 4.588e-67
Identity = 136/220 (61.82%), Postives = 159/220 (72.27%), Query Frame = 3
Query:   33 QPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFV-KEGDD--ANKLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVL-ERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSA 680
            QPDD I F  L ++  M+  E  D+ Q  L  A G    KE  D  A+KLN++ QLTGFSDPVYAEAYV V+ YDIVLDV V+N+T +TLQN  LELAT+GDLKLVE+P   TLAP     IKAN+KV+STE G+IFGNIVY+ S    +R  VVL+DIHIDIMDYI PA CTDA FR MWAEFEWENKV VNT + D  ++L HI+KSTNMKCLT   A
Sbjct:  666 QPDDPISFMQLTAKNEMNCKE--DQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLTGFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNVTDLNDYLQHILKSTNMKCLTPEKA 883          
BLAST of CF509950 vs. ExPASy Swiss-Prot
Match: COPB_BOVIN (Coatomer subunit beta OS=Bos taurus GN=COPB1 PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 4.588e-67
Identity = 137/220 (62.27%), Postives = 159/220 (72.27%), Query Frame = 3
Query:   33 QPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFV-KEGDD--ANKLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVL-ERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSA 680
            QPDD I F  L ++  M+  E  D+ Q  L  A G    KE  D  A+KLN++ QLTGFSDPVYAEAYV V+ YDIVLDV V+N+T +TLQN  LELAT+GDLKLVE+P   TLAP     IKAN+KV+STE G+IFGNIVY+ S    +R  VVL+DIHIDIMDYI PA CTDA FR MWAEFEWENKV VNT I D  ++L HI+KSTNMKCLT   A
Sbjct:  666 QPDDPISFMQLTAKNEMNCKE--DQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLTGFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNIVDLNDYLQHILKSTNMKCLTPEKA 883          
BLAST of CF509950 vs. ExPASy Swiss-Prot
Match: COPB_MOUSE (Coatomer subunit beta OS=Mus musculus GN=Copb1 PE=1 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 7.826e-67
Identity = 136/220 (61.82%), Postives = 159/220 (72.27%), Query Frame = 3
Query:   33 QPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFV-KEGDD--ANKLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVL-ERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSA 680
            QPDD I F  L ++  M+  E  D+ Q  L  A G    KE  D  A+KLN++ QLTGFSDPVYAEAYV V+ YDIVLDV V+N+T +TLQN  LELAT+GDLKLVE+P   TLAP     IKAN+KV+STE G+IFGNIVY+ S    +R  VVL+DIHIDIMDYI PA CTDA FR MWAEFEWENKV VNT + D  ++L HI+KSTNMKCLT   A
Sbjct:  666 QPDDPISFMQLTAKNEMNCKE--DQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLTGFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNMTDLNDYLQHILKSTNMKCLTPEKA 883          
BLAST of CF509950 vs. ExPASy Swiss-Prot
Match: COPB_HUMAN (Coatomer subunit beta OS=Homo sapiens GN=COPB1 PE=1 SV=3)

HSP 1 Score: 253.062 bits (645), Expect = 1.022e-66
Identity = 136/220 (61.82%), Postives = 159/220 (72.27%), Query Frame = 3
Query:   33 QPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFV-KEGDD--ANKLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVL-ERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSA 680
            QPDD I F  L ++  M+  E  D+ Q  L  A G    KE  D  A+KLN++ QLTGFSDPVYAEAYV V+ YDIVLDV V+N+T +TLQN  LELAT+GDLKLVE+P   TLAP     IKAN+KV+STE G+IFGNIVY+ S    +R  VVL+DIHIDIMDYI PA CTDA FR MWAEFEWENKV VNT + D  ++L HI+KSTNMKCLT   A
Sbjct:  666 QPDDPISFMQLTAKNEMNCKE--DQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLTGFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNMVDLNDYLQHILKSTNMKCLTPEKA 883          
BLAST of CF509950 vs. ExPASy Swiss-Prot
Match: COPB_PONAB (Coatomer subunit beta OS=Pongo abelii GN=COPB1 PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.277e-66
Identity = 136/220 (61.82%), Postives = 159/220 (72.27%), Query Frame = 3
Query:   33 QPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFV-KEGDD--ANKLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVL-ERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSA 680
            QPDD I F  L ++  M+  E  D+ Q  L  A G    KE  D  A+KLN++ QLTGFSDPVYAEAYV V+ YDIVLDV V+N+T +TLQN  LELAT+GDLKLVE+P   TLAP     IKAN+KV+STE G+IFGNIVY+ S    +R  VVL+DIHIDIMDYI PA CTDA FR MWAEFEWENKV VNT + D  ++L HI+KSTNMKCLT   A
Sbjct:  666 QPDDPISFMQLTAKNEMNCKE--DQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLTGFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNMIDLNDYLRHILKSTNMKCLTPEKA 883          
The following BLAST results are available for this feature:
BLAST of CF509950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
COPB1_ORYSJ4.372e-11892.48Coatomer subunit beta-1 OS=Oryza sativa subsp. jap... [more]
COPB2_ORYSJ9.116e-11690.71Coatomer subunit beta-2 OS=Oryza sativa subsp. jap... [more]
COPB2_ARATH3.464e-11590.27Coatomer subunit beta-2 OS=Arabidopsis thaliana GN... [more]
COPB1_ARATH3.464e-11590.27Coatomer subunit beta-1 OS=Arabidopsis thaliana GN... [more]
COPB_CHICK9.244e-6863.18Coatomer subunit beta OS=Gallus gallus GN=COPB1 PE... [more]
COPB_RAT4.588e-6761.82Coatomer subunit beta OS=Rattus norvegicus GN=Copb... [more]
COPB_BOVIN4.588e-6762.27Coatomer subunit beta OS=Bos taurus GN=COPB1 PE=2 ... [more]
COPB_MOUSE7.826e-6761.82Coatomer subunit beta OS=Mus musculus GN=Copb1 PE=... [more]
COPB_HUMAN1.022e-6661.82Coatomer subunit beta OS=Homo sapiens GN=COPB1 PE=... [more]
COPB_PONAB2.277e-6661.82Coatomer subunit beta OS=Pongo abelii GN=COPB1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-464 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509950 ID=CF509950; Name=CF509950; organism=Citrus sinensis; type=EST; length=682bp
AATTAAAGGCAAAGGCTCAGATTTCTCATGCACAGCCAGATGACCTTATT
GACTTCTACCATCTGAAGAGCAGGAAGGGAATGAGTCAGCTGGAGTTGGA
AGATGAGGTGCAAGATGATCTAAAACGCGCAACTGGGGAGTTTGTCAAGG
AAGGAGATGATGCAAATAAGCTCAACCGCATTCTTCAACTCACTGGATTT
AGTGACCCTGTGTATGCTGAAGCATATGTTACTGTTCACCACTATGATAT
TGTCCTTGATGTTACAGTTATCAACCGCACCAAGGAAACCCTTCAGAATT
TGTGCTTGGAGTTAGCTACTATGGGTGATCTTAAGCTTGTTGAGCGTCCA
CAGAATTATACATTAGCACCTGAATCAAGCAAGCAAATAAAGGCTAACAT
CAAGGTGTCCTCCACTGAGACTGGGGTCATTTTTGGGAATATTGTTTATG
AGACTTCAAATGTGCTTGAGCGAACAGTTGTTGTCCTCAATGACATTCAC
ATTGACATCATGGACTATATTTCTCCTGCTGTTTGTACAGATGCAGCTTT
TAGAACTATGTGGGCTGAGTTTGAATGGGAAAACAAGGTTGCTGTTAACA
CAGTAATTCAAGATGAGAAGGAATTCCTTGATCATATCATCAAATCAACC
AACATGAAGTGCCTCACTGCACCGTCTGCACT
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