CF509950
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF509950 vs. ExPASy Swiss-Prot
Match: COPB1_ORYSJ (Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica GN=Os11g0174000 PE=2 SV=1) HSP 1 Score: 423.705 bits (1088), Expect = 4.372e-118 Identity = 209/226 (92.48%), Postives = 217/226 (96.02%), Query Frame = 3 Query: 3 LKAKAQISHAQPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFVKEGDDANKLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSA 680 +KAKAQISHAQPDDLIDFYHLKSR+GMSQLELED VQDDLK ATGEF K+ DDAN+LNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLV+RPQNYTLAPESSKQI+ANIKVSSTETGVIFGNIVYETSNV+ER+VVVLNDIHIDIMDYISPA C D AFR MWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLT PSA Sbjct: 662 MKAKAQISHAQPDDLIDFYHLKSRRGMSQLELEDAVQDDLKAATGEFTKDADDANRLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVDRPQNYTLAPESSKQIRANIKVSSTETGVIFGNIVYETSNVMERSVVVLNDIHIDIMDYISPATCADVAFRNMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTPPSA 887
BLAST of CF509950 vs. ExPASy Swiss-Prot
Match: COPB2_ORYSJ (Coatomer subunit beta-2 OS=Oryza sativa subsp. japonica GN=Os01g0281400 PE=3 SV=1) HSP 1 Score: 416.001 bits (1068), Expect = 9.116e-116 Identity = 205/226 (90.71%), Postives = 215/226 (95.13%), Query Frame = 3 Query: 3 LKAKAQISHAQPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFVKEGDDANKLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSA 680 +KAKAQISHAQPDDLIDFYHLKSR+GMSQLELEDEVQDDLK ATG F K+ DAN+LNRILQLTGFSDPVYAEAYVTVHHYDIVLDVT+INRTKETLQNLCLELATMGDLKLV+RPQNYTLAPESSKQI+ANIKVSSTETGVIFGNIVYETSNV+ER+VVVLNDIHIDIMDYISPA C D FR MWAEFEWENKVAVNTVIQ+EKEFLDHIIKSTNMKCLT PSA Sbjct: 660 MKAKAQISHAQPDDLIDFYHLKSRRGMSQLELEDEVQDDLKAATGGFTKDAYDANRLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTIINRTKETLQNLCLELATMGDLKLVDRPQNYTLAPESSKQIRANIKVSSTETGVIFGNIVYETSNVMERSVVVLNDIHIDIMDYISPATCADVTFRNMWAEFEWENKVAVNTVIQNEKEFLDHIIKSTNMKCLTPPSA 885
BLAST of CF509950 vs. ExPASy Swiss-Prot
Match: COPB2_ARATH (Coatomer subunit beta-2 OS=Arabidopsis thaliana GN=At4g31490 PE=1 SV=2) HSP 1 Score: 414.075 bits (1063), Expect = 3.464e-115 Identity = 204/226 (90.27%), Postives = 216/226 (95.58%), Query Frame = 3 Query: 3 LKAKAQISHAQPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFVKEGDDANKLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSA 680 LKAK Q +HAQPDDLIDF+HLKSRKGMSQLELED+VQDDLKRATGEF K+ +DANKLNRILQLTGFSDPVYAEAYVTVHHYDI L+VTVINRTKETLQNLCLELATMGDLKLVERPQNY+LAPE S QIKANIKVSSTETGVIFGNIVYETSNV+ER VVVLNDIHIDIMDYISPAVC++ AFRTMWAEFEWENKVAVNT IQ+E+EFLDHIIKSTNMKCLTAPSA Sbjct: 658 LKAKTQTTHAQPDDLIDFFHLKSRKGMSQLELEDQVQDDLKRATGEFTKDENDANKLNRILQLTGFSDPVYAEAYVTVHHYDIALEVTVINRTKETLQNLCLELATMGDLKLVERPQNYSLAPERSMQIKANIKVSSTETGVIFGNIVYETSNVMERNVVVLNDIHIDIMDYISPAVCSEVAFRTMWAEFEWENKVAVNTTIQNEREFLDHIIKSTNMKCLTAPSA 883
BLAST of CF509950 vs. ExPASy Swiss-Prot
Match: COPB1_ARATH (Coatomer subunit beta-1 OS=Arabidopsis thaliana GN=At4g31480 PE=1 SV=2) HSP 1 Score: 414.075 bits (1063), Expect = 3.464e-115 Identity = 204/226 (90.27%), Postives = 216/226 (95.58%), Query Frame = 3 Query: 3 LKAKAQISHAQPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFVKEGDDANKLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSA 680 LKAK Q +HAQPDDLIDF+HLKSRKGMSQLELED+VQDDLKRATGEF K+ +DANKLNRILQLTGFSDPVYAEAYVTVHHYDI L+VTVINRTKETLQNLCLELATMGDLKLVERPQNY+LAPE S QIKANIKVSSTETGVIFGNIVYETSNV+ER VVVLNDIHIDIMDYISPAVC++ AFRTMWAEFEWENKVAVNT IQ+E+EFLDHIIKSTNMKCLTAPSA Sbjct: 658 LKAKTQTTHAQPDDLIDFFHLKSRKGMSQLELEDQVQDDLKRATGEFTKDENDANKLNRILQLTGFSDPVYAEAYVTVHHYDIALEVTVINRTKETLQNLCLELATMGDLKLVERPQNYSLAPERSMQIKANIKVSSTETGVIFGNIVYETSNVMERNVVVLNDIHIDIMDYISPAVCSEVAFRTMWAEFEWENKVAVNTTIQNEREFLDHIIKSTNMKCLTAPSA 883
BLAST of CF509950 vs. ExPASy Swiss-Prot
Match: COPB_CHICK (Coatomer subunit beta OS=Gallus gallus GN=COPB1 PE=2 SV=1) HSP 1 Score: 256.529 bits (654), Expect = 9.244e-68 Identity = 139/220 (63.18%), Postives = 159/220 (72.27%), Query Frame = 3 Query: 33 QPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFV-KEGDD--ANKLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVL-ERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSA 680 QPDD I F L ++ MS E D+ Q L A G KE D A+KLN++ QLTGFSDPVYAEAYV V+ YDIVLDV V+N+T +TLQN LELAT+GDLKLVE+P TLAP IKAN+KV+STE G+IFGNIVY+ S +R VVL+DIHIDIMDYI PA CTDA FR MWAEFEWENKV VNT I D E+L HI+KSTNMKCLT A Sbjct: 666 QPDDPISFMQLTAKNEMSSKE--DQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLTGFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPASCTDAEFRQMWAEFEWENKVTVNTNIIDLNEYLQHILKSTNMKCLTPEKA 883
BLAST of CF509950 vs. ExPASy Swiss-Prot
Match: COPB_RAT (Coatomer subunit beta OS=Rattus norvegicus GN=Copb1 PE=1 SV=1) HSP 1 Score: 254.218 bits (648), Expect = 4.588e-67 Identity = 136/220 (61.82%), Postives = 159/220 (72.27%), Query Frame = 3 Query: 33 QPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFV-KEGDD--ANKLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVL-ERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSA 680 QPDD I F L ++ M+ E D+ Q L A G KE D A+KLN++ QLTGFSDPVYAEAYV V+ YDIVLDV V+N+T +TLQN LELAT+GDLKLVE+P TLAP IKAN+KV+STE G+IFGNIVY+ S +R VVL+DIHIDIMDYI PA CTDA FR MWAEFEWENKV VNT + D ++L HI+KSTNMKCLT A Sbjct: 666 QPDDPISFMQLTAKNEMNCKE--DQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLTGFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNVTDLNDYLQHILKSTNMKCLTPEKA 883
BLAST of CF509950 vs. ExPASy Swiss-Prot
Match: COPB_BOVIN (Coatomer subunit beta OS=Bos taurus GN=COPB1 PE=2 SV=1) HSP 1 Score: 254.218 bits (648), Expect = 4.588e-67 Identity = 137/220 (62.27%), Postives = 159/220 (72.27%), Query Frame = 3 Query: 33 QPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFV-KEGDD--ANKLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVL-ERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSA 680 QPDD I F L ++ M+ E D+ Q L A G KE D A+KLN++ QLTGFSDPVYAEAYV V+ YDIVLDV V+N+T +TLQN LELAT+GDLKLVE+P TLAP IKAN+KV+STE G+IFGNIVY+ S +R VVL+DIHIDIMDYI PA CTDA FR MWAEFEWENKV VNT I D ++L HI+KSTNMKCLT A Sbjct: 666 QPDDPISFMQLTAKNEMNCKE--DQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLTGFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNIVDLNDYLQHILKSTNMKCLTPEKA 883
BLAST of CF509950 vs. ExPASy Swiss-Prot
Match: COPB_MOUSE (Coatomer subunit beta OS=Mus musculus GN=Copb1 PE=1 SV=1) HSP 1 Score: 253.447 bits (646), Expect = 7.826e-67 Identity = 136/220 (61.82%), Postives = 159/220 (72.27%), Query Frame = 3 Query: 33 QPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFV-KEGDD--ANKLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVL-ERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSA 680 QPDD I F L ++ M+ E D+ Q L A G KE D A+KLN++ QLTGFSDPVYAEAYV V+ YDIVLDV V+N+T +TLQN LELAT+GDLKLVE+P TLAP IKAN+KV+STE G+IFGNIVY+ S +R VVL+DIHIDIMDYI PA CTDA FR MWAEFEWENKV VNT + D ++L HI+KSTNMKCLT A Sbjct: 666 QPDDPISFMQLTAKNEMNCKE--DQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLTGFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNMTDLNDYLQHILKSTNMKCLTPEKA 883
BLAST of CF509950 vs. ExPASy Swiss-Prot
Match: COPB_HUMAN (Coatomer subunit beta OS=Homo sapiens GN=COPB1 PE=1 SV=3) HSP 1 Score: 253.062 bits (645), Expect = 1.022e-66 Identity = 136/220 (61.82%), Postives = 159/220 (72.27%), Query Frame = 3 Query: 33 QPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFV-KEGDD--ANKLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVL-ERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSA 680 QPDD I F L ++ M+ E D+ Q L A G KE D A+KLN++ QLTGFSDPVYAEAYV V+ YDIVLDV V+N+T +TLQN LELAT+GDLKLVE+P TLAP IKAN+KV+STE G+IFGNIVY+ S +R VVL+DIHIDIMDYI PA CTDA FR MWAEFEWENKV VNT + D ++L HI+KSTNMKCLT A Sbjct: 666 QPDDPISFMQLTAKNEMNCKE--DQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLTGFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNMVDLNDYLQHILKSTNMKCLTPEKA 883
BLAST of CF509950 vs. ExPASy Swiss-Prot
Match: COPB_PONAB (Coatomer subunit beta OS=Pongo abelii GN=COPB1 PE=2 SV=1) HSP 1 Score: 251.906 bits (642), Expect = 2.277e-66 Identity = 136/220 (61.82%), Postives = 159/220 (72.27%), Query Frame = 3 Query: 33 QPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFV-KEGDD--ANKLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVL-ERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSA 680 QPDD I F L ++ M+ E D+ Q L A G KE D A+KLN++ QLTGFSDPVYAEAYV V+ YDIVLDV V+N+T +TLQN LELAT+GDLKLVE+P TLAP IKAN+KV+STE G+IFGNIVY+ S +R VVL+DIHIDIMDYI PA CTDA FR MWAEFEWENKV VNT + D ++L HI+KSTNMKCLT A Sbjct: 666 QPDDPISFMQLTAKNEMNCKE--DQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLTGFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNMIDLNDYLRHILKSTNMKCLTPEKA 883 The following BLAST results are available for this feature:
BLAST of CF509950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF509950 ID=CF509950; Name=CF509950; organism=Citrus sinensis; type=EST; length=682bpback to top |