CF509952

Overview
NameCF509952
Unique NameCF509952
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509952 vs. ExPASy Swiss-Prot
Match: SYP31_ARATH (Syntaxin-31 OS=Arabidopsis thaliana GN=SYP31 PE=1 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 1.582e-65
Identity = 130/202 (64.36%), Postives = 155/202 (76.73%), Query Frame = 2
Query:    5 SQKIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIAEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHENRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRLPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRAV 610
            SQKI RLAKLAK+S++F+D  VEIQELT LI++DIT LNMALSDLQTLQN+E+A+GNYSQD+V H T VCDDLK++LMGATK+LQDVLTTR+EN+KAHENRKQ+FS     DSP + +A+ V EPPPWSS  N   + Q   LPP              G   G+QLRRR A++NAPS  MEMS+LQQ VP+QENYSQSRAV
Sbjct:   62 SQKITRLAKLAKQSTIFNDRTVEIQELTVLIRNDITGLNMALSDLQTLQNMELADGNYSQDQVGHYTAVCDDLKTRLMGATKQLQDVLTTRSENMKAHENRKQLFSTKNAVDSPPQNNAKSVPEPPPWSSSSNPFGNLQQPLLPPLNT-----------GAPPGSQLRRRSAIENAPSQQMEMSLLQQTVPKQENYSQSRAV 252          
BLAST of CF509952 vs. ExPASy Swiss-Prot
Match: SYP32_ARATH (Syntaxin-32 OS=Arabidopsis thaliana GN=SYP32 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.218e-34
Identity = 92/204 (45.10%), Postives = 122/204 (59.80%), Query Frame = 2
Query:    5 SQKIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIAEGNYSQDR--VVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHENRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQL-RLPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRA 607
            SQK+++LAKLAKR+S+FDDP  EIQELT +IK +I+ALN AL DLQ  ++ +  EGN S+DR    HS TV DDLK +LM  TKE +DVLT RTEN+K HE+R+Q+FS+NA ++S       P     P ++   ASE S P     G     +QL    PG  +    L++        S   +    QQ+VP Q+ Y Q RA
Sbjct:   73 SQKLSKLAKLAKRTSVFDDPTQEIQELTVVIKQEISALNSALVDLQLFRSSQNDEGNNSRDRDKSTHSATVVDDLKYRLMDTTKEFKDVLTMRTENMKVHESRRQLFSSNASKES-----TNPFVRQRPLAAKAAASE-SVPLPWANGSSSSSSQLVPWKPGEGESSPLLQQ--------SQQQQQQQQQQMVPLQDTYMQGRA 262          
BLAST of CF509952 vs. ExPASy Swiss-Prot
Match: STX5_RAT (Syntaxin-5 OS=Rattus norvegicus GN=Stx5 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.169e-14
Identity = 45/105 (42.86%), Postives = 64/105 (60.95%), Query Frame = 2
Query:   11 KIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIAEGNYSQDRV-VHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHENRKQIFS 322
            K+ +L  LAKR S+FDD  VEI+ELT +IK DI +LN  ++ LQ       A+G+ S   +  HS T+   L+SKL   + + + VL  RTEN+K   NR++ FS
Sbjct:  111 KLEKLTILAKRKSLFDDKAVEIEELTYIIKQDINSLNKQIAQLQDFVR---AKGSQSGRHLQTHSNTIVVSLQSKLASMSNDFKSVLEVRTENLKQQRNRREQFS 212          
BLAST of CF509952 vs. ExPASy Swiss-Prot
Match: STX5_MOUSE (Syntaxin-5 OS=Mus musculus GN=Stx5 PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 2.169e-14
Identity = 45/105 (42.86%), Postives = 64/105 (60.95%), Query Frame = 2
Query:   11 KIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIAEGNYSQDRV-VHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHENRKQIFS 322
            K+ +L  LAKR S+FDD  VEI+ELT +IK DI +LN  ++ LQ       A+G+ S   +  HS T+   L+SKL   + + + VL  RTEN+K   NR++ FS
Sbjct:  111 KLEKLTILAKRKSLFDDKAVEIEELTYIIKQDINSLNKQIAQLQDFVR---AKGSQSGRHLQTHSNTIVVSLQSKLASMSNDFKSVLEVRTENLKQQRNRREQFS 212          
BLAST of CF509952 vs. ExPASy Swiss-Prot
Match: STX5_BOVIN (Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.831e-14
Identity = 66/200 (33.00%), Postives = 97/200 (48.50%), Query Frame = 2
Query:   11 KIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIAEGNYSQDRV-VHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHENRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRLPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRA 607
            K+ +L  LAKR S+FDD  VEI+ELT +IK DI +LN  ++ LQ       A+G+ S   +  HS T+   L+SKL   + + + VL  RTEN+K   +R++ FS                       +PV+A   + P+ L  G V +G + R   G V          A+D   S     S   Q++  Q++Y QSRA
Sbjct:  111 KLEKLTILAKRKSLFDDKAVEIEELTYIIKQDINSLNKQIAQLQDFVR---AKGSQSGRHLQTHSNTIVVSLQSKLASMSNDFKSVLEVRTENLKQQRSRREQFS----------------------RAPVSALPLA-PNHLGGGAVVLGAESR-ASGDV----------AIDMMDS---RTSQQLQLIDEQDSYIQSRA 270          
BLAST of CF509952 vs. ExPASy Swiss-Prot
Match: STX5_HUMAN (Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 8.241e-14
Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = 2
Query:   11 KIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIAEGNYSQDRV-VHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHENRKQIFS 322
            K+ +L  LAKR S+FDD  VEI+ELT +IK DI +LN  ++ LQ       A+G+ S   +  HS T+   L+SKL   + + + VL  RTEN+K   +R++ FS
Sbjct:  111 KLEKLTILAKRKSLFDDKAVEIEELTYIIKQDINSLNKQIAQLQDFVR---AKGSQSGRHLQTHSNTIVVSLQSKLASMSNDFKSVLEVRTENLKQQRSRREQFS 212          
BLAST of CF509952 vs. ExPASy Swiss-Prot
Match: SED5_SCHPO (Integral membrane protein sed5 OS=Schizosaccharomyces pombe GN=sed5 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.190e-12
Identity = 46/134 (34.33%), Postives = 72/134 (53.73%), Query Frame = 2
Query:    8 QKIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIAEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHENRKQIFSANALRD-----------SPFRQHAQPVTE 376
            +K+ +L++LAKR ++FDD  VEIQELT  IK  +++LN   SD+ +LQ +     N       HS  V   L++ L   +   +D+L  RT+N+KA +NR + F A++  +           SPF  +  P  E
Sbjct:   59 EKLQKLSQLAKRKTLFDDRPVEIQELTFQIKQSLSSLN---SDIASLQQVVKGNRNKPAQMNQHSENVVVSLQNSLANTSMTFKDILEIRTQNMKASQNRTEKFVASSSMNANPLINSGNSISPFADYNDPKPE 189          
BLAST of CF509952 vs. ExPASy Swiss-Prot
Match: STX5_DROME (Syntaxin-5 OS=Drosophila melanogaster GN=Syx5 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.713e-12
Identity = 40/104 (38.46%), Postives = 61/104 (58.65%), Query Frame = 2
Query:   11 KIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIAEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHENRKQIFS 322
            K+ +L  LAK+ S+FDD   EIQELT +IK D+ ALN  ++ LQ +   +    N  +  V HS+ +   L+SKL   + + + +L  RTEN+K  + R+  FS
Sbjct:  217 KLEKLTMLAKKKSLFDDRPQEIQELTYIIKGDLNALNQQIARLQDISKDQRRHTN-GKHLVSHSSNMVLALQSKLASMSTDFKQILEVRTENLKQQKTRRDQFS 319          
The following BLAST results are available for this feature:
BLAST of CF509952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SYP31_ARATH1.582e-6564.36Syntaxin-31 OS=Arabidopsis thaliana GN=SYP31 PE=1 ... [more]
SYP32_ARATH3.218e-3445.10Syntaxin-32 OS=Arabidopsis thaliana GN=SYP32 PE=2 ... [more]
STX5_RAT2.169e-1442.86Syntaxin-5 OS=Rattus norvegicus GN=Stx5 PE=1 SV=2[more]
STX5_MOUSE2.169e-1442.86Syntaxin-5 OS=Mus musculus GN=Stx5 PE=2 SV=3[more]
STX5_BOVIN4.831e-1433.00Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1[more]
STX5_HUMAN8.241e-1441.90Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2[more]
SED5_SCHPO1.190e-1234.33Integral membrane protein sed5 OS=Schizosaccharomy... [more]
STX5_DROME7.713e-1238.46Syntaxin-5 OS=Drosophila melanogaster GN=Syx5 PE=2... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-466 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509952 ID=CF509952; Name=CF509952; organism=Citrus sinensis; type=EST; length=610bp
AGCCTCCCAAAAAATCGCTAGACTTGCCAAATTGGCAAAAAGGTCATCGA
TGTTTGATGATCCAATTGTGGAGATACAGGAGTTGACTGCTTTGATAAAG
GACGACATTACAGCTCTCAACATGGCTCTTTCGGATTTGCAAACCCTTCA
AAACTTGGAGATTGCGGAGGGAAATTATTCTCAGGACAGAGTTGTGCATT
CGACTACTGTCTGTGATGACTTGAAGAGCAAGCTCATGGGTGCTACTAAA
GAACTTCAAGATGTTTTAACCACAAGAACTGAGAATATAAAAGCTCATGA
AAACAGGAAACAAATTTTTTCTGCAAATGCATTGAGAGATAGCCCATTTA
GACAGCATGCACAACCTGTTACTGAGCCCCCACCTTGGTCAAGTCCAGTA
AATGCATCTGAGAGTTCACAACCATCAGCATTGCCGCCAGGTGGAGTCCA
AGTTGGAAACCAACTGAGATTGCCGCCAGGTGGAGTCCAAGTTGGAAACC
AACTGAGACGAAGGCCAGCTGTGGACAATGCTCCTTCACACCACATGGAA
ATGTCGATGTTACAGCAGGTAGTTCCACGGCAAGAGAATTACTCACAAAG
TAGGGCAGTG
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