CF509955

Overview
NameCF509955
Unique NameCF509955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF509955_ssr612 microsatellite CF509955_ssr612:612..623. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7167 contig Csv1_Contig7167:1483..2105. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF509955 vs. ExPASy Swiss-Prot
Match: LHY_ARATH (Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.104e-21
Identity = 72/184 (39.13%), Postives = 88/184 (47.83%), Query Frame = 1 
Query:   25 HDQDDYRSFLHISSAFSSLIVSTLLQNPXXXXXXXXXXTFWPYTNMETSADSPTCPQGGFLSRQMSSPPSMXXXXXXXXXXXXXXXXXHGLLPLCAPFHTPFTCPPACATAVSSMDTAQVPA-AKTDKNDNTPPNPALKDHQPDLEYSEALQAQNSASKSLTVLTSDSEESASAKLKMELKATD 573
            H QDDYRSFL ISS FS+LI+STLLQNP          + WPY ++  S DS T           SSPPS+                 HGLLP+CAP   P TC P    AV +      PA  + D  +NT         QP  + + ALQ QN ASKS    + DS+E+   KL  + K  D
Sbjct:  282 HSQDDYRSFLQISSTFSNLIMSTLLQNPAAHAAATFAASVWPYASVGNSGDSST--------PMSSSPPSITAIAAATVAAATAWWASHGLLPVCAP--APITCVPFSTVAVPT------PAMTEMDTVENT---------QPFEKQNTALQDQNLASKSPASSSDDSDETGVTKLNADSKTND 440
The following BLAST results are available for this feature:
BLAST of CF509955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LHY_ARATH1.104e-2139.13Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-469 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509955 ID=CF509955; Name=CF509955; organism=Citrus sinensis; type=EST; length=623bp
CATCCTCCCTTTACCCAATTTCGCCATGATCAAGATGACTATCGATCATT
TCTACACATCTCATCCGCATTTTCAAGTCTTATAGTGTCTACTCTGTTAC
AAAACCCTGCGGCCCATGCTGCAGCAAGCTTTGCTGCTACATTTTGGCCC
TATACAAATATGGAAACTTCAGCTGATTCTCCTACATGTCCGCAGGGTGG
TTTCTTATCTAGACAAATGAGCTCCCCGCCAAGTATGGCAGCTATTGCCG
CAGCCACTGTAGCAGCTGCCACTGCATGGTGGGCAGCACATGGACTGCTT
CCCTTGTGTGCCCCATTTCATACTCCTTTTACCTGCCCTCCTGCTTGTGC
AACTGCAGTTTCATCAATGGATACTGCACAAGTTCCGGCAGCCAAGACAG
ACAAAAATGACAATACTCCTCCAAATCCTGCCTTAAAGGATCATCAACCA
GACCTTGAATATTCTGAAGCTTTGCAAGCTCAAAATTCAGCGTCTAAATC
ACTCACTGTGTTAACATCAGATTCCGAGGAGAGTGCAAGTGCGAAGCTTA
AAATGGAACTGAAAGCTACTGATCATGAGAAGAATTCTGAAGAAAATGAG
CCTTCATGATTCAAACAAACAAA
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