CF509958

Overview
NameCF509958
Unique NameCF509958
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11317 contig Csv1_Contig11317:240..833. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509958 vs. ExPASy Swiss-Prot
Match: CP74_LINUS (Allene oxide synthase, chloroplastic OS=Linum usitatissimum GN=CYP74A PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.476e-37
Identity = 78/197 (39.59%), Postives = 118/197 (59.90%), Query Frame = 2
Query:    2 YFWFQGPETFFRKRIEKHKSTVFRTNIPPTWPLFLNVNPNVIAVLDCKSFAHLFDMEIVEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRSSKLWVSEVVSSLDTLFDTVEKELSEKNSISYMVPLQKCVFNFLSKSIVGADPKADAEIAENGFSMLDKWLALQILPTVSINILQPLEEIFL 592
            YF+ QG E FF+ R++K+KSTV+R N+PP    F+  NP VI +LD KSF  LFDM  VEKK++  G +MPS + TGG R+ +YLD SEP H +LK    + +K      + E  SS   L + VE +L+ K   ++  P ++  FNFLS++  G  P  D  + ++  S++ KW+   + P +S+ + + +EE  L
Sbjct:   93 YFYNQGREEFFKSRLQKYKSTVYRANMPPG--PFIASNPRVIVLLDAKSFPVLFDMSKVEKKDLFTGTYMPSTELTGGYRILSYLDPSEPNHTKLKQLLFNLIKNRRDYVIPEFSSSFTDLCEVVEYDLATKGKAAFNDPAEQAAFNFLSRAFFGVKP-IDTPLGKDAPSLISKWVLFNLAPILSVGLPKEVEEATL 286          
BLAST of CF509958 vs. ExPASy Swiss-Prot
Match: CP74A_ARATH (Allene oxide synthase, chloroplastic OS=Arabidopsis thaliana GN=CYP74A PE=1 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 3.214e-36
Identity = 80/194 (41.24%), Postives = 117/194 (60.31%), Query Frame = 2
Query:    2 YFWFQGPETFFRKRIEKHKSTVFRTNIPPTWPLFLNVNPNVIAVLDCKSFAHLFDMEIVEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRSSKLWVSEVVSSLDTLFDTVEKELSEKNSISYMVPLQKCVFNFLSKSIVGADPKADAEIAENGFSMLDKWLALQILPTVSINILQPLEE 583
            YF+ QG E FF+ RI K+ STV+R N+PP    F+  NP V+A+LD KSF  LFD++ VEKK++  G +MPS + TGG R+ +YLD SEPKH +LK      LK S      E  ++   LFD++EKELS K    +        FNFL+++  G +P AD ++  +   ++ KW+   + P +SI + + +EE
Sbjct:   75 YFYDQGAEEFFKSRIRKYNSTVYRVNMPPG--AFIAENPQVVALLDGKSFPVLFDVDKVEKKDLFTGTYMPSTELTGGYRILSYLDPSEPKHEKLKNLLFFLLKSSRNRIFPEFQATYSELFDSLEKELSLKGKADFGGSSDGTAFNFLARAFYGTNP-ADTKLKADAPGLITKWVLFNLHPLLSIGLPRVIEE 265          
BLAST of CF509958 vs. ExPASy Swiss-Prot
Match: C74A2_PARAR (Allene oxide synthase OS=Parthenium argentatum GN=CYP74A2 PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.397e-31
Identity = 70/192 (36.46%), Postives = 116/192 (60.42%), Query Frame = 2
Query:   17 GPETFFRKRIEKHKSTVFRTNIPPTWPLFLNVNPNVIAVLDCKSFAHLFDMEIVEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRSSKLWVSEVVSSLDTLFDTVEKELSEKNSISYMVPLQKCVFNFLSKSIVGADPKADAEIAENGFSMLDKWLALQILPTVSINILQPLEEIFL 592
            G + +FR R++K++STVFR N+PP    F++ NP VI +LD KSF  LFD+  VEKK++  G +MPS K TGG RV +YLD SEP+HAQLK      LK SS   + +  ++   LF+ +E EL++    ++    ++  F FL ++   ++P+ + ++  +  +++  W+   + PT+ + +   L+E  L
Sbjct:   35 GRDEYFRSRMQKYQSTVFRANMPPG--PFVSSNPKVIVLLDAKSFPILFDVSKVEKKDLFTGTYMPSTKLTGGYRVLSYLDPSEPRHAQLKNLLFFMLKNSSNRVIPQFETTYTELFEGLEAELAKNGKAAFNDVGEQAAFRFLGRAYFNSNPE-ETKLGTSAPTLISSWVLFNLAPTLDLGLPWFLQEPLL 223          
BLAST of CF509958 vs. ExPASy Swiss-Prot
Match: C74A2_ORYSJ (Allene oxide synthase 2 OS=Oryza sativa subsp. japonica GN=CYP74A2 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 3.806e-29
Identity = 70/198 (35.35%), Postives = 105/198 (53.03%), Query Frame = 2
Query:    2 YFWFQGPETFFRKRIEKHKSTVFRTNIPPTWPLFLNVNPNVIAVLDCKSFAHLFDMEIVEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRSSKLWVSEVVSSLDTLFDTVEKELSEKNSISYMVPLQKCV-FNFLSKSIVGADPKADAEIAENGFSMLDKWLALQILPTVSINILQPLEEIFL 592
            +++ QG + +F  R E++ STV R N+PP    F+  +P V+A+LD KSF  LFD+  VEK+++  G FMPS   TGG RV AYLD SEP HA++K   +  L      +V    S+   L DTVE +L+     S    L     F F+ ++  G  P A + +   G +    WL  Q+ P  ++ +   +E+  L
Sbjct:   30 FYYLQGQDKYFESRAERYGSTVVRINVPPG--PFMARDPRVVALLDAKSFPVLFDVAKVEKRDVFTGTFMPSTSLTGGYRVCAYLDPSEPNHAKIKQLLLSLLVSRKDAFVPVFRSNFGALLDTVESQLASGGGKSDFTALNDATSFEFIGEAYFGVRPSASSSLGTGGPTKAALWLLWQLAPLTTLGLPMIIEDPLL 225          
BLAST of CF509958 vs. ExPASy Swiss-Prot
Match: C74A1_ORYSJ (Allene oxide synthase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CYP74A1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.652e-27
Identity = 69/200 (34.50%), Postives = 105/200 (52.50%), Query Frame = 2
Query:    2 YFWFQGP---ETFFRKRIEKHKSTVFRTNIPPTWPLFLNVNPNVIAVLDCKSFAHLFDMEIVEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRSSKLWVSEVVSSLDTLFDTVEKELSEKNSISYMVPLQKCVFNFLSKSIVGADPKADAEIAENGFSMLDKWLALQILPTVSINILQPLEEIFL 592
            Y +F GP   + FF  R+  H+STV R N+PP    F+  +P V+A+LD  SF  LFD  +V+K ++  G FMPS   TGG RV +YLD SEP HA LK      L    +  + +       LF  +E +L+      + V      F FL + ++G DP A + +  +G  ++ KW+  Q+ P +S+ +   +E+  L
Sbjct:   66 YEYFYGPGGRDGFFAARVRAHRSTVVRLNMPPG--PFVARDPRVVALLDAASFPVLFDTSLVDKTDLFTGTFMPSTDLTGGYRVLSYLDPSEPNHAPLKTLLFYLLSHRRQQVIPKFREVYGDLFGLMENDLARVGKADFGVHNDAAAFGFLCQGLLGRDP-AKSALGRDGPKLITKWVLFQLSPLLSLGLPTLVEDTLL 262          
BLAST of CF509958 vs. ExPASy Swiss-Prot
Match: C74A3_ORYSJ (Allene oxide synthase 3 OS=Oryza sativa subsp. japonica GN=CYP74A3 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.311e-21
Identity = 64/199 (32.16%), Postives = 104/199 (52.26%), Query Frame = 2
Query:    2 YFWFQGPETFFRKRIEKHK-STVFRTNIPPTWPLFLNVNPNVIAVLDCKSFAHLFDMEIVEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRSSKLWVSEVVSSLDTLFDTVEKELSEKNSISYMVPLQKCVFNFLSKSIVGADPKADAEIAENGFSMLDKWLALQILPTVSINILQ-PLEEIFL 592
            YF+FQG E +FR R+ +H  +TV R N+PP    F++ NP V+A+LD +SF  L D  +V+K + L G +MPS    GG R  A+LD ++P+HA++K   M               ++   +FD VE  L    ++ +     + + +F   ++ G +P +   + +   +    WLA Q+ P  S  +   PLEE+ L
Sbjct:   50 YFYFQGAEEYFRSRVARHGGATVLRVNMPPG--PFISGNPRVVALLDARSFRVLLDDSMVDKADTLDGTYMPSRALFGGHRPLAFLDAADPRHAKIKRVVMSLAAARMHHVAPAFRAAFAAMFDAVEAGLGA--AVEFNKLNMRYMLDFTCAALFGGEPPSKV-VGDGAVTKAMAWLAFQLHPIASKVVKPWPLEELLL 243          
BLAST of CF509958 vs. ExPASy Swiss-Prot
Match: C74A4_ORYSJ (Allene oxide synthase 4 OS=Oryza sativa subsp. japonica GN=CYP74A4 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.982e-21
Identity = 63/199 (31.66%), Postives = 103/199 (51.76%), Query Frame = 2
Query:    2 YFWFQGPETFFRKRIEKHK-STVFRTNIPPTWPLFLNVNPNVIAVLDCKSFAHLFDMEIVEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRSSKLWVSEVVSSLDTLFDTVEKELSEKNSISYMVPLQKCVFNFLSKSIVGADPKADAEIAENGFSMLDKWLALQILPTVSINILQ-PLEEIFL 592
            Y++FQG + FFR R+ +H  +TV R N+PP    FL  +P V+A+LD +SF  L D  +V+K + L G FMPS+   GG R  A+LD ++P+HA++K   M               ++   +FD V+  L     + +     + + +F   ++ G  P + A + +   +   KWL  Q+ P  S  +   PLE++ L
Sbjct:   50 YYYFQGADEFFRSRVARHGGATVLRVNMPPG--PFLAGDPRVVALLDARSFRVLLDDSMVDKADTLDGTFMPSLALFGGHRPLAFLDAADPRHAKIKRVVMSLAAARMHHVAPAFRAAFAAMFDEVDAGLVAGGPVEFNKLNMRYMLDFTCAALFGGAPPSKA-MGDAAVTKAVKWLIFQLHPLASKVVKPWPLEDLLL 245          
The following BLAST results are available for this feature:
BLAST of CF509958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CP74_LINUS6.476e-3739.59Allene oxide synthase, chloroplastic OS=Linum usit... [more]
CP74A_ARATH3.214e-3641.24Allene oxide synthase, chloroplastic OS=Arabidopsi... [more]
C74A2_PARAR1.397e-3136.46Allene oxide synthase OS=Parthenium argentatum GN=... [more]
C74A2_ORYSJ3.806e-2935.35Allene oxide synthase 2 OS=Oryza sativa subsp. jap... [more]
C74A1_ORYSJ4.652e-2734.50Allene oxide synthase 1, chloroplastic OS=Oryza sa... [more]
C74A3_ORYSJ1.311e-2132.16Allene oxide synthase 3 OS=Oryza sativa subsp. jap... [more]
C74A4_ORYSJ4.982e-2131.66Allene oxide synthase 4 OS=Oryza sativa subsp. jap... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-472 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509958 ID=CF509958; Name=CF509958; organism=Citrus sinensis; type=EST; length=594bp
CTACTTCTGGTTCCAGGGTCCTGAAACTTTCTTCAGAAAACGCATTGAAA
AGCACAAGAGCACGGTGTTCCGTACAAACATACCACCCACGTGGCCTTTG
TTTCTCAACGTAAACCCCAATGTCATTGCCGTTCTTGACTGCAAATCTTT
TGCTCATCTCTTTGATATGGAGATTGTGGAGAAGAAAAATATTCTTGTTG
GTGATTTCATGCCCAGTGTTAAGTTTACAGGAGGCTTGAGGGTTAGTGCT
TATCTTGATACTTCTGAGCCTAAACATGCCCAGCTCAAAGGCTTCGCCAT
GGACACTCTGAAAAGAAGCTCAAAATTATGGGTATCAGAAGTGGTATCAA
GTCTGGACACACTGTTCGACACCGTCGAGAAGGAACTCTCCGAAAAGAAC
AGCATAAGCTACATGGTCCCTTTACAAAAATGCGTCTTTAACTTCCTCTC
AAAATCGATCGTGGGAGCCGACCCAAAAGCCGACGCCGAAATCGCCGAGA
ACGGCTTCTCCATGCTCGACAAGTGGCTGGCCTTGCAGATCCTGCCCACA
GTCAGCATAAACATCTTGCAGCCCCTTGAAGAGATCTTTCTTCA
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