CF509959

Overview
NameCF509959
Unique NameCF509959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF509959_ssr597 microsatellite CF509959_ssr597:597..608. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF509959 vs. ExPASy Swiss-Prot
Match: RFS6_ARATH (Probable galactinol--sucrose galactosyltransferase 6 OS=Arabidopsis thaliana GN=RFS6 PE=2 SV=2)

HSP 1 Score: 304.294 bits (778), Expect = 4.224e-82
Identity = 139/159 (87.42%), Postives = 151/159 (94.97%), Query Frame = 1
Query:    1 DVMAVQGLGLVNPKNVYKFYNELHSYLASAGIDGVKVDVQCILETLGAGLGGRVELTRQYHQALDASVARNFPDNGCIACMSHNTDALYCSKQTAIVRASDDFYPRDPTSHTIHIAAVAYNSVFLGEIMQPDWDMFHSLHPAAEYHGSARAISGGPIYV 477
            DVM +QGLGLV+PK VYKFYNELHSYLA AG+DGVKVDVQC+LETLG GLGGRVELTRQ+HQALD+SVA+NFPDNGCIACMSHNTDALYCSKQ A++RASDDFYPRDP SHTIHIA+VAYNSVFLGE MQPDWDMFHS+HPAAEYH SARAISGGP+YV
Sbjct:  346 DVMTLQGLGLVSPKKVYKFYNELHSYLADAGVDGVKVDVQCVLETLGGGLGGRVELTRQFHQALDSSVAKNFPDNGCIACMSHNTDALYCSKQAAVIRASDDFYPRDPVSHTIHIASVAYNSVFLGEFMQPDWDMFHSVHPAAEYHASARAISGGPLYV 504          
BLAST of CF509959 vs. ExPASy Swiss-Prot
Match: RFS2_ARATH (Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2 PE=2 SV=2)

HSP 1 Score: 271.552 bits (693), Expect = 3.034e-72
Identity = 128/159 (80.50%), Postives = 139/159 (87.42%), Query Frame = 1
Query:    1 DVMAVQGLGLVNPKNVYKFYNELHSYLASAGIDGVKVDVQCILETLGAGLGGRVELTRQYHQALDASVARNFPDNGCIACMSHNTDALYCSKQTAIVRASDDFYPRDPTSHTIHIAAVAYNSVFLGEIMQPDWDMFHSLHPAAEYHGSARAISGGPIYV 477
            D +AV GLGLVNPK V+ FYNELHSYLAS GIDGVKVDVQ I+ETLGAGLGGRV LTR Y QAL+AS+ARNF DNGCI+CM HNTD LY +KQTAIVRASDDFYPRDP SHTIHIA+VAYNS+FLGE MQPDWDMFHSLHP AEYH +ARA+ G  IYV
Sbjct:  348 DSLAVHGLGLVNPKKVFNFYNELHSYLASCGIDGVKVDVQNIIETLGAGLGGRVSLTRSYQQALEASIARNFTDNGCISCMCHNTDGLYSAKQTAIVRASDDFYPRDPASHTIHIASVAYNSLFLGEFMQPDWDMFHSLHPTAEYHAAARAVGGCAIYV 506          
BLAST of CF509959 vs. ExPASy Swiss-Prot
Match: RFS1_ARATH (Probable galactinol--sucrose galactosyltransferase 1 OS=Arabidopsis thaliana GN=RFS1 PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.319e-67
Identity = 116/153 (75.82%), Postives = 137/153 (89.54%), Query Frame = 1
Query:   19 GLGLVNPKNVYKFYNELHSYLASAGIDGVKVDVQCILETLGAGLGGRVELTRQYHQALDASVARNFPDNGCIACMSHNTDALYCSKQTAIVRASDDFYPRDPTSHTIHIAAVAYNSVFLGEIMQPDWDMFHSLHPAAEYHGSARAISGGPIYV 477
            GLGLVNP+ V+ FYN+LHSYLAS G+DGVKVDVQ ILETLGAG GGRV+L ++YHQAL+AS++RNFPDNG I+CMSHNTD LY +K+TA++RASDDF+PRDP SHTIHIA+VAYN++FLGE MQPDWDMFHSLHP AEYH +ARA+ G  IYV
Sbjct:  358 GLGLVNPEKVFSFYNDLHSYLASVGVDGVKVDVQNILETLGAGHGGRVKLAKKYHQALEASISRNFPDNGIISCMSHNTDGLYSAKKTAVIRASDDFWPRDPASHTIHIASVAYNTLFLGEFMQPDWDMFHSLHPMAEYHAAARAVGGCAIYV 510          
BLAST of CF509959 vs. ExPASy Swiss-Prot
Match: RFS5_ARATH (Probable galactinol--sucrose galactosyltransferase 5 OS=Arabidopsis thaliana GN=RFS5 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.631e-35
Identity = 76/168 (45.24%), Postives = 104/168 (61.90%), Query Frame = 1
Query:    1 DVMAVQGLGLVNPKNVYKFYNELHSYLASAGIDGVKVDVQCILETLGAGLGGRVELTRQYHQALDASVARNFPDNGCIACMSHNTDALYCSKQT-AIVRASDDFYPRDPTS--------HTIHIAAVAYNSVFLGEIMQPDWDMFHSLHPAAEYHGSARAISGGPIYV 477
            D +   G+G  +P    +FY  LHS+L +AGIDGVKVDV  ILE L    GGRV+L + Y +AL +SV ++F  NG IA M H  D ++   +  ++ R  DDF+  DP+            H+   AYNS+++G  +QPDWDMF S HP AE+H ++RAISGGPIY+
Sbjct:  376 DKIIETGIGFASPDLAKEFYEGLHSHLQNAGIDGVKVDVIHILEMLCQKYGGRVDLAKAYFKALTSSVNKHFNGNGVIASMEHCNDFMFLGTEAISLGRVGDDFWCTDPSGDPNGTFWLQGCHMVHCAYNSLWMGNFIQPDWDMFQSTHPCAEFHAASRAISGGPIYI 543          
BLAST of CF509959 vs. ExPASy Swiss-Prot
Match: RFS_PEA (Galactinol--sucrose galactosyltransferase OS=Pisum sativum GN=RFS PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.511e-34
Identity = 76/168 (45.24%), Postives = 105/168 (62.50%), Query Frame = 1
Query:    1 DVMAVQGLGLVNPKNVYKFYNELHSYLASAGIDGVKVDVQCILETLGAGLGGRVELTRQYHQALDASVARNFPDNGCIACMSHNTD-ALYCSKQTAIVRASDDFYPRDPTS--------HTIHIAAVAYNSVFLGEIMQPDWDMFHSLHPAAEYHGSARAISGGPIYV 477
            D +   G+GLV P    + ++ +HS+L SAGIDGVKVDV  +LE L    GGRVEL + Y++AL +SV ++F  NG IA M H  D  L  ++  ++ R  DDF+  DP+            H+   AYNS+++G  + PDWDMF S HP AE+H ++RAISGGP+YV
Sbjct:  389 DKIVENGVGLVPPNLAQEMFDGIHSHLESAGIDGVKVDVIHLLELLSEEYGGRVELAKAYYKALTSSVNKHFKGNGVIASMEHCNDFFLLGTEAISLGRVGDDFWCCDPSGDPNGTYWLQGCHMVHCAYNSLWMGNFIHPDWDMFQSTHPCAEFHAASRAISGGPVYV 556          
BLAST of CF509959 vs. ExPASy Swiss-Prot
Match: RFS_ORYSJ (Galactinol--sucrose galactosyltransferase OS=Oryza sativa subsp. japonica GN=RFS PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.626e-33
Identity = 74/168 (44.05%), Postives = 101/168 (60.12%), Query Frame = 1
Query:    1 DVMAVQGLGLVNPKNVYKFYNELHSYLASAGIDGVKVDVQCILETLGAGLGGRVELTRQYHQALDASVARNFPDNGCIACMSHNTD-ALYCSKQTAIVRASDDFYPRDPTS--------HTIHIAAVAYNSVFLGEIMQPDWDMFHSLHPAAEYHGSARAISGGPIYV 477
            D +   G+GLV+P+   + Y  LHS+L ++GIDGVKVDV  +LE +    GGRVEL + Y   L  SV R+F  NG IA M H  D  L  ++  A+ R  DDF+  DP+            H+   AYNS+++G  + PDWDMF S HP A +H ++RA+SGGP+YV
Sbjct:  374 DKIVNNGVGLVDPRRARELYEGLHSHLQASGIDGVKVDVIHLLEMVCEEYGGRVELAKAYFAGLTESVRRHFNGNGVIASMEHCNDFMLLGTEAVALGRVGDDFWCTDPSGDPDGTFWLQGCHMVHCAYNSLWMGAFIHPDWDMFQSTHPCAAFHAASRAVSGGPVYV 541          
BLAST of CF509959 vs. ExPASy Swiss-Prot
Match: RFS4_ARATH (Probable galactinol--sucrose galactosyltransferase 4 OS=Arabidopsis thaliana GN=RFS4 PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 3.626e-33
Identity = 70/168 (41.67%), Postives = 103/168 (61.31%), Query Frame = 1
Query:    1 DVMAVQGLGLVNPKNVYKFYNELHSYLASAGIDGVKVDVQCILETLGAGLGGRVELTRQYHQALDASVARNFPDNGCIACMSHNTDALY-CSKQTAIVRASDDFYPRDPTS--------HTIHIAAVAYNSVFLGEIMQPDWDMFHSLHPAAEYHGSARAISGGPIYV 477
            D +   G+GLV+P   ++FY+ +HSYLAS G+ G K+DV   LE+L    GGRVEL + Y+  L  S+ +NF     IA M    +  +  +KQ +I R  DDF+ +DP            +H+   +YNS+++G+++QPDWDMF S H  AEYH ++RAI GGP+Y+
Sbjct:  460 DKVVEAGIGLVHPSKAHEFYDSMHSYLASVGVTGAKIDVFQTLESLAEEHGGRVELAKAYYDGLTESMIKNFNGTDVIASMQQCNEFFFLATKQISIGRVGDDFWWQDPYGDPQGVYWLQGVHMIHCSYNSIWMGQMIQPDWDMFQSDHVCAEYHAASRAICGGPVYL 627          
BLAST of CF509959 vs. ExPASy Swiss-Prot
Match: STSYN_PEA (Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.378e-32
Identity = 71/161 (44.10%), Postives = 101/161 (62.73%), Query Frame = 1
Query:   22 LGLVNPKNVYKFYNELHSYLASAGIDGVKVDVQCILETLGAGLGGRVELTRQYHQALDASVARNFPDNGCIACMSHNTDALYC-SKQTAIVRASDDFYPRDPTS--------HTIHIAAVAYNSVFLGEIMQPDWDMFHSLHPAAEYHGSARAISGGPIYV 477
            LGLV+P    + Y+ +HSYLA +GI GVKVDV   LE +    GGRV+L + Y++ L  S+ +NF  NG IA M H  D  +  +KQ ++ R  DDF+ +DP            +H+   +YNS+++G+++QPDWDMF S H  A++H  +RAI GGPIYV
Sbjct:  451 LGLVHPSQANELYDSMHSYLAESGITGVKVDVIHSLEYVCDEYGGRVDLAKVYYEGLTKSIVKNFNGNGMIASMQHCNDFFFLGTKQISMGRVGDDFWFQDPNGDPMGSFWLQGVHMIHCSYNSLWMGQMIQPDWDMFQSDHVCAKFHAGSRAICGGPIYV 611          
The following BLAST results are available for this feature:
BLAST of CF509959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
RFS6_ARATH4.224e-8287.42Probable galactinol--sucrose galactosyltransferase... [more]
RFS2_ARATH3.034e-7280.50Probable galactinol--sucrose galactosyltransferase... [more]
RFS1_ARATH1.319e-6775.82Probable galactinol--sucrose galactosyltransferase... [more]
RFS5_ARATH8.631e-3545.24Probable galactinol--sucrose galactosyltransferase... [more]
RFS_PEA2.511e-3445.24Galactinol--sucrose galactosyltransferase OS=Pisum... [more]
RFS_ORYSJ3.626e-3344.05Galactinol--sucrose galactosyltransferase OS=Oryza... [more]
RFS4_ARATH3.626e-3341.67Probable galactinol--sucrose galactosyltransferase... [more]
STSYN_PEA1.378e-3244.10Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 S... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-473 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509959 ID=CF509959; Name=CF509959; organism=Citrus sinensis; type=EST; length=716bp
GATGTAATGGCGGTGCAGGGTTTGGGTTTGGTGAATCCGAAGAACGTGTA
CAAGTTTTACAACGAGTTGCACAGCTATCTGGCGTCTGCGGGTATAGACG
GCGTTAAGGTGGACGTCCAGTGCATATTGGAGACGCTTGGTGCTGGCTTA
GGTGGCAGGGTTGAGTTGACCAGACAGTATCATCAAGCGCTTGATGCGTC
GGTTGCCAGGAACTTCCCTGATAATGGGTGCATTGCGTGCATGAGTCACA
ATACTGATGCACTCTACTGCTCAAAACAAACTGCTATAGTGAGAGCATCA
GATGATTTCTACCCACGTGATCCGACATCACACACCATTCATATTGCAGC
TGTCGCATACAACAGTGTGTTCTTGGGAGAAATCATGCAGCCTGATTGGG
ACATGTTCCACTCCCTTCATCCAGCTGCTGAGTATCACGGATCGGCCCGT
GCTATAAGTGGTGGGCCCATTTACGTCAGGTAATGAATCATATAACAGGA
ACTGTCTACCTTACAGATTCTGTAACATACGCACCCAATGCATGCACCAC
ACCTGTCCTGCTTATGGAGAAAAAGCATGCAATTGTTTTTGTTTGGTAGC
TAGCTAGCCAATCAGGGAGCTGGCTAAGTTGGATCTGTATGTTACAGAAT
CTGTAACTTAGCCAGCTCCCATATAACATGGCCATTCATTTTCTCATAAA
AGATCAATATTTTTCT
back to top