CF509960
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF509960 vs. ExPASy Swiss-Prot
Match: RL282_ARATH (60S ribosomal protein L28-2 OS=Arabidopsis thaliana GN=RPL28C PE=2 SV=1) HSP 1 Score: 206.068 bits (523), Expect = 1.248e-52 Identity = 100/138 (72.46%), Postives = 116/138 (84.06%), Query Frame = 2 Query: 176 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSNLVSKR 589 MATVPGQLIWEIVK+NNCFLVKQFGRGNA V+FSKE NNL N+NS+KHSGLAN+KTVTIQ GKD VVL T KTK+QNKP ++KS ++KEF RM+K V NQV DNYYRPDLKKAALARLSA+++ L+V+ KR Sbjct: 1 MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQAAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGPKR 138
BLAST of CF509960 vs. ExPASy Swiss-Prot
Match: RL281_ARATH (60S ribosomal protein L28-1 OS=Arabidopsis thaliana GN=RPL28A PE=1 SV=1) HSP 1 Score: 205.682 bits (522), Expect = 1.630e-52 Identity = 100/138 (72.46%), Postives = 119/138 (86.23%), Query Frame = 2 Query: 176 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSNLVSKR 589 MATVPGQLIWEIVK NNCFLVKQFGRGN+ V+FSKE NNL N++S+KHSGLAN+KTVTIQ KD +VVLAT KTKKQNKP ++KS ++KEFPRM+KAV NQV DNYYRPDLKKAALARLSA+++ L+V+ +K+ Sbjct: 1 MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGAKQ 138
BLAST of CF509960 vs. ExPASy Swiss-Prot
Match: RL28_HUMAN (60S ribosomal protein L28 OS=Homo sapiens GN=RPL28 PE=1 SV=3) HSP 1 Score: 81.2629 bits (199), Expect = 4.635e-15 Identity = 46/131 (35.11%), Postives = 73/131 (55.73%), Query Frame = 2 Query: 197 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSNLVSKR 589 L W +V+ + FL+K+ + +S EPNNL NSF+++GL +RKTV ++P VV+ + Q KPA+ ++T+ K ++ + + N YRPDL+ AA+ R SA+ RS K + KR Sbjct: 5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVMVKRKR 130
BLAST of CF509960 vs. ExPASy Swiss-Prot
Match: RL28_MOUSE (60S ribosomal protein L28 OS=Mus musculus GN=Rpl28 PE=1 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 6.054e-15 Identity = 46/131 (35.11%), Postives = 73/131 (55.73%), Query Frame = 2 Query: 197 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSNLVSKR 589 L W +V+ + FL+K+ + +S EPNNL NSF+++GL +RKTV ++P VV+ + Q KPA+ ++T+ K ++ + + N YRPDL+ AA+ R SA+ RS K + KR Sbjct: 5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVVVKRKR 130
BLAST of CF509960 vs. ExPASy Swiss-Prot
Match: RL28_SPOFR (60S ribosomal protein L28 OS=Spodoptera frugiperda GN=RpL28 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 7.907e-15 Identity = 53/127 (41.73%), Postives = 73/127 (57.48%), Query Frame = 2 Query: 197 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTI--QPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQV----ADNYYRPDLKKAALARLSAVNRS 559 L W I++ NN FLVK + N FSKEPNN+ NLNS++++GL +K V + P K +VV K K NKPA K+ +R++F A+ + +V N+YR DL KA L R SA+ RS Sbjct: 5 LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENPDRKGFTVVY--KKAKATNKPA----KNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRRASAILRS 122
BLAST of CF509960 vs. ExPASy Swiss-Prot
Match: RL28_BOVIN (60S ribosomal protein L28 OS=Bos taurus GN=RPL28 PE=2 SV=3) HSP 1 Score: 80.4925 bits (197), Expect = 7.907e-15 Identity = 44/123 (35.77%), Postives = 70/123 (56.91%), Query Frame = 2 Query: 197 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLK 565 L W +V+ + FL+K+ + +S EPNNL NSF+++GL +RKTV ++P VV+ + Q KPA+ ++T+ K ++ + + N YRPDL+ AA+ R SA+ RS K Sbjct: 5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK 122
BLAST of CF509960 vs. ExPASy Swiss-Prot
Match: RL28_RAT (60S ribosomal protein L28 OS=Rattus norvegicus GN=Rpl28 PE=1 SV=4) HSP 1 Score: 76.2554 bits (186), Expect = 1.491e-13 Identity = 45/131 (34.35%), Postives = 72/131 (54.96%), Query Frame = 2 Query: 197 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSNLVSKR 589 L W +V+ + FL+K+ + +S EPNNL NSF+++GL +RKTV ++ VV+ + Q KPA+ ++T+ K ++ + + N YRPDL+ AA+ R SA+ RS K + KR Sbjct: 5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEAWPDGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVVVKRKR 130
BLAST of CF509960 vs. ExPASy Swiss-Prot
Match: RL28_DROME (60S ribosomal protein L28 OS=Drosophila melanogaster GN=RpL28 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.339e-13 Identity = 50/142 (35.21%), Postives = 77/142 (54.23%), Query Frame = 2 Query: 176 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFP----RMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSNLVSKR 589 MAT L W I++ NN FL+K + + FS EPNNL +++S+++SG+ ++KT+ + P K K +PA K+T+R +F R K + N + + YR DL +AAL R SAV RS K + + K+ Sbjct: 1 MAT-SSHLNWLIIRNNNAFLLK---KRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKGFTAVLKKGKYAQRPA----KNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVLRSQKPAPVKGKK 134
BLAST of CF509960 vs. ExPASy Swiss-Prot
Match: RL28E_SCHPO (Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe GN=rpl28e PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.649e-12 Identity = 44/137 (32.12%), Postives = 70/137 (51.09%), Query Frame = 2 Query: 182 TVPGQLIWEIVKKNNCFLVK--QFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMA-KAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSNLVS 583 +V LIW++++ NN FLVK +FG ++F++EP N+ N+ + SGL N K V +Q V++ K KPA L K + R K++ ++ YR DL K ++AR SA+ S + V+ Sbjct: 2 SVSNDLIWQVIRDNNRFLVKRPEFG----GIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANSPRGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVARASAILSSQRPKKTVA 134
BLAST of CF509960 vs. ExPASy Swiss-Prot
Match: RL28_DICDI (60S ribosomal protein L28 OS=Dictyostelium discoideum GN=rpl28 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.061e-11 Identity = 48/133 (36.09%), Postives = 66/133 (49.62%), Query Frame = 2 Query: 197 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQP-GGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSNLVSKRE 592 L+W I+KKNN FL G + S EP NL N NS K+SGLA R T+ + GK VV+++ KK PA +T R V +A Y P+L+ AAL RL V +L+ + + R+ Sbjct: 5 LVWSIIKKNNAFLKSSHG-----LTLSAEPGNLRNKNSLKYSGLARRTTIDVAAVNGK---VVVSSKIVKKAAFPAQSKKTTTFSTVNTRKTARFVKTLA-TQYAPELRAAALGRLHRVQSALRSAKKAAARK 128 The following BLAST results are available for this feature:
BLAST of CF509960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF509960 ID=CF509960; Name=CF509960; organism=Citrus sinensis; type=EST; length=632bpback to top |