CF509960

Overview
NameCF509960
Unique NameCF509960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF509960_ssr46 microsatellite CF509960_ssr46:46..55. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig646 contig Csv1_Contig646:31..665. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509960 vs. ExPASy Swiss-Prot
Match: RL282_ARATH (60S ribosomal protein L28-2 OS=Arabidopsis thaliana GN=RPL28C PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.248e-52
Identity = 100/138 (72.46%), Postives = 116/138 (84.06%), Query Frame = 2
Query:  176 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSNLVSKR 589
            MATVPGQLIWEIVK+NNCFLVKQFGRGNA V+FSKE NNL N+NS+KHSGLAN+KTVTIQ  GKD  VVL T KTK+QNKP   ++KS ++KEF RM+K V NQV DNYYRPDLKKAALARLSA+++ L+V+    KR
Sbjct:    1 MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQAAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGPKR 138          
BLAST of CF509960 vs. ExPASy Swiss-Prot
Match: RL281_ARATH (60S ribosomal protein L28-1 OS=Arabidopsis thaliana GN=RPL28A PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.630e-52
Identity = 100/138 (72.46%), Postives = 119/138 (86.23%), Query Frame = 2
Query:  176 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSNLVSKR 589
            MATVPGQLIWEIVK NNCFLVKQFGRGN+ V+FSKE NNL N++S+KHSGLAN+KTVTIQ   KD +VVLAT KTKKQNKP   ++KS ++KEFPRM+KAV NQV DNYYRPDLKKAALARLSA+++ L+V+   +K+
Sbjct:    1 MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGAKQ 138          
BLAST of CF509960 vs. ExPASy Swiss-Prot
Match: RL28_HUMAN (60S ribosomal protein L28 OS=Homo sapiens GN=RPL28 PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 4.635e-15
Identity = 46/131 (35.11%), Postives = 73/131 (55.73%), Query Frame = 2
Query:  197 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSNLVSKR 589
            L W +V+  + FL+K+  +      +S EPNNL   NSF+++GL +RKTV ++P      VV+   +   Q KPA+   ++T+ K       ++ + +  N YRPDL+ AA+ R SA+ RS K   +  KR
Sbjct:    5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVMVKRKR 130          
BLAST of CF509960 vs. ExPASy Swiss-Prot
Match: RL28_MOUSE (60S ribosomal protein L28 OS=Mus musculus GN=Rpl28 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.054e-15
Identity = 46/131 (35.11%), Postives = 73/131 (55.73%), Query Frame = 2
Query:  197 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSNLVSKR 589
            L W +V+  + FL+K+  +      +S EPNNL   NSF+++GL +RKTV ++P      VV+   +   Q KPA+   ++T+ K       ++ + +  N YRPDL+ AA+ R SA+ RS K   +  KR
Sbjct:    5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVVVKRKR 130          
BLAST of CF509960 vs. ExPASy Swiss-Prot
Match: RL28_SPOFR (60S ribosomal protein L28 OS=Spodoptera frugiperda GN=RpL28 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.907e-15
Identity = 53/127 (41.73%), Postives = 73/127 (57.48%), Query Frame = 2
Query:  197 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTI--QPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQV----ADNYYRPDLKKAALARLSAVNRS 559
            L W I++ NN FLVK   + N    FSKEPNN+ NLNS++++GL  +K V +   P  K  +VV    K K  NKPA    K+ +R++F   A+  + +V      N+YR DL KA L R SA+ RS
Sbjct:    5 LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENPDRKGFTVVY--KKAKATNKPA----KNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRRASAILRS 122          
BLAST of CF509960 vs. ExPASy Swiss-Prot
Match: RL28_BOVIN (60S ribosomal protein L28 OS=Bos taurus GN=RPL28 PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 7.907e-15
Identity = 44/123 (35.77%), Postives = 70/123 (56.91%), Query Frame = 2
Query:  197 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLK 565
            L W +V+  + FL+K+  +      +S EPNNL   NSF+++GL +RKTV ++P      VV+   +   Q KPA+   ++T+ K       ++ + +  N YRPDL+ AA+ R SA+ RS K
Sbjct:    5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK 122          
BLAST of CF509960 vs. ExPASy Swiss-Prot
Match: RL28_RAT (60S ribosomal protein L28 OS=Rattus norvegicus GN=Rpl28 PE=1 SV=4)

HSP 1 Score: 76.2554 bits (186), Expect = 1.491e-13
Identity = 45/131 (34.35%), Postives = 72/131 (54.96%), Query Frame = 2
Query:  197 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSNLVSKR 589
            L W +V+  + FL+K+  +      +S EPNNL   NSF+++GL +RKTV ++       VV+   +   Q KPA+   ++T+ K       ++ + +  N YRPDL+ AA+ R SA+ RS K   +  KR
Sbjct:    5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEAWPDGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVVVKRKR 130          
BLAST of CF509960 vs. ExPASy Swiss-Prot
Match: RL28_DROME (60S ribosomal protein L28 OS=Drosophila melanogaster GN=RpL28 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.339e-13
Identity = 50/142 (35.21%), Postives = 77/142 (54.23%), Query Frame = 2
Query:  176 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFP----RMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSNLVSKR 589
            MAT    L W I++ NN FL+K   + +    FS EPNNL +++S+++SG+ ++KT+ + P            K K   +PA    K+T+R +F     R  K + N +  + YR DL +AAL R SAV RS K + +  K+
Sbjct:    1 MAT-SSHLNWLIIRNNNAFLLK---KRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKGFTAVLKKGKYAQRPA----KNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVLRSQKPAPVKGKK 134          
BLAST of CF509960 vs. ExPASy Swiss-Prot
Match: RL28E_SCHPO (Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe GN=rpl28e PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.649e-12
Identity = 44/137 (32.12%), Postives = 70/137 (51.09%), Query Frame = 2
Query:  182 TVPGQLIWEIVKKNNCFLVK--QFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMA-KAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSNLVS 583
            +V   LIW++++ NN FLVK  +FG     ++F++EP N+   N+ + SGL N K V +Q       V++     K   KPA L  K  +     R   K++  ++    YR DL K ++AR SA+  S +    V+
Sbjct:    2 SVSNDLIWQVIRDNNRFLVKRPEFG----GIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANSPRGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVARASAILSSQRPKKTVA 134          
BLAST of CF509960 vs. ExPASy Swiss-Prot
Match: RL28_DICDI (60S ribosomal protein L28 OS=Dictyostelium discoideum GN=rpl28 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.061e-11
Identity = 48/133 (36.09%), Postives = 66/133 (49.62%), Query Frame = 2
Query:  197 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQP-GGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSNLVSKRE 592
            L+W I+KKNN FL    G     +  S EP NL N NS K+SGLA R T+ +    GK   VV+++   KK   PA     +T      R     V  +A   Y P+L+ AAL RL  V  +L+ +   + R+
Sbjct:    5 LVWSIIKKNNAFLKSSHG-----LTLSAEPGNLRNKNSLKYSGLARRTTIDVAAVNGK---VVVSSKIVKKAAFPAQSKKTTTFSTVNTRKTARFVKTLA-TQYAPELRAAALGRLHRVQSALRSAKKAAARK 128          
The following BLAST results are available for this feature:
BLAST of CF509960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RL282_ARATH1.248e-5272.4660S ribosomal protein L28-2 OS=Arabidopsis thalian... [more]
RL281_ARATH1.630e-5272.4660S ribosomal protein L28-1 OS=Arabidopsis thalian... [more]
RL28_HUMAN4.635e-1535.1160S ribosomal protein L28 OS=Homo sapiens GN=RPL28... [more]
RL28_MOUSE6.054e-1535.1160S ribosomal protein L28 OS=Mus musculus GN=Rpl28... [more]
RL28_SPOFR7.907e-1541.7360S ribosomal protein L28 OS=Spodoptera frugiperda... [more]
RL28_BOVIN7.907e-1535.7760S ribosomal protein L28 OS=Bos taurus GN=RPL28 P... [more]
RL28_RAT1.491e-1334.3560S ribosomal protein L28 OS=Rattus norvegicus GN=... [more]
RL28_DROME4.339e-1335.2160S ribosomal protein L28 OS=Drosophila melanogast... [more]
RL28E_SCHPO1.649e-1232.12Probable 60S ribosomal protein L28e OS=Schizosacch... [more]
RL28_DICDI4.061e-1136.0960S ribosomal protein L28 OS=Dictyostelium discoid... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-474 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509960 ID=CF509960; Name=CF509960; organism=Citrus sinensis; type=EST; length=632bp
TTGGCAGCCCTAAACCCTGTTGCTCTTAGCATTCGAAGGTCCTGATCTCT
CTCTCTTCACTCCCCCCCACTGCTGTAAGGTTTGATTTCATACATCATCA
ATTTTCTATATAGCAGCACTGATTTGTTTAGGCTGTGTTTGGCAGTGAGT
CGGAGTGAAAAAAAGGCAGAAAGAAATGGCGACGGTTCCAGGACAGTTGA
TTTGGGAGATCGTGAAGAAGAACAACTGCTTCTTGGTTAAACAATTCGGC
AGAGGCAACGCCAGCGTCGAGTTCAGCAAGGAACCCAACAACCTCTACAA
CCTTAACTCCTTCAAACACTCCGGTTTGGCGAATCGGAAGACTGTGACCA
TTCAGCCTGGAGGCAAGGACCTGTCTGTGGTGTTGGCCACTGCAAAGACC
AAGAAGCAGAACAAGCCTGCCAGCTTGCTTCACAAATCCACCATGAGGAA
GGAGTTCCCAAGAATGGCTAAGGCTGTTGTCAATCAGGTTGCTGATAACT
ACTACAGGCCAGACTTGAAGAAGGCAGCCCTTGCAAGGCTTAGTGCTGTT
AACAGGAGCCTAAAGGTCTCAAATCTGGTGTCAAAAAGAGAAACAGGCAG
GCTACGAAGGTTCCCGTTAGGAAGTGAACTTT
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