CF509963

Overview
NameCF509963
Unique NameCF509963
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF509963_ssr270 microsatellite CF509963_ssr270:270..281. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig889 contig Csv1_Contig889:559..1109. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509963 vs. ExPASy Swiss-Prot
Match: METE_ARATH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Arabidopsis thaliana GN=CIMS PE=1 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 1.296e-86
Identity = 164/179 (91.62%), Postives = 171/179 (95.53%), Query Frame = 3
Query:    6 LEGVVGKDKLVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGFFSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELDIDVLVHGEP 542
            LEG+VGKDKLVVSTSCSLLHTAVDL+NE KLDDEIKSWLAFAAQKVVEVNALAKALAGQKDE  FSANAAA ASR+SSPRVTNE VQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQT+ELRRVRREYKAKK+SEE+YV +IKEEI KVV LQEELDIDVLVHGEP
Sbjct:  313 LEGIVGKDKLVVSTSCSLLHTAVDLINETKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEALFSANAAALASRRSSPRVTNEGVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTVELRRVRREYKAKKVSEEDYVKAIKEEIKKVVDLQEELDIDVLVHGEP 491          
BLAST of CF509963 vs. ExPASy Swiss-Prot
Match: METE_MESCR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mesembryanthemum crystallinum GN=METE PE=2 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 1.692e-86
Identity = 164/179 (91.62%), Postives = 171/179 (95.53%), Query Frame = 3
Query:    6 LEGVVGKDKLVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGFFSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELDIDVLVHGEP 542
            LEGVVGKDKLVVSTSCS LHTAVDL+NE KLDDEIKSWLAFAAQKV+EVNALAKAL+GQKDE FFSANAAA ASRKSSPRVTNE VQKAA ALKGSDHRRAT VS+RLDAQQKKLNLPILPTTTIGSFPQT+ELRRVRREYKAKKISEEEYV +IKEEI+KVVKLQEELDIDVLVHGEP
Sbjct:  313 LEGVVGKDKLVVSTSCSFLHTAVDLINETKLDDEIKSWLAFAAQKVLEVNALAKALSGQKDEAFFSANAAALASRKSSPRVTNEAVQKAATALKGSDHRRATTVSSRLDAQQKKLNLPILPTTTIGSFPQTVELRRVRREYKAKKISEEEYVKAIKEEISKVVKLQEELDIDVLVHGEP 491          
BLAST of CF509963 vs. ExPASy Swiss-Prot
Match: METE_CATRO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.097e-85
Identity = 162/179 (90.50%), Postives = 172/179 (96.09%), Query Frame = 3
Query:    6 LEGVVGKDKLVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGFFSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELDIDVLVHGEP 542
            LEG+VGKDKLVVSTSCSLLHTAVDLVNE KLD EIKSWLAFAAQKVVEVNALAKALAG+KDE FFS NAAAQASRKSSPRVTN+ VQKAAAAL+GSDHRRAT VSARLDAQQKKLNLP+LPTTTIGSFPQT+ELRRVRREYKAKKISE++YV +IKEEI+KVVKLQEELDIDVLVHGEP
Sbjct:  313 LEGIVGKDKLVVSTSCSLLHTAVDLVNEPKLDKEIKSWLAFAAQKVVEVNALAKALAGEKDEAFFSENAAAQASRKSSPRVTNQAVQKAAAALRGSDHRRATTVSARLDAQQKKLNLPVLPTTTIGSFPQTLELRRVRREYKAKKISEDDYVKAIKEEISKVVKLQEELDIDVLVHGEP 491          
BLAST of CF509963 vs. ExPASy Swiss-Prot
Match: METE_SOLSC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Solenostemon scutellarioides GN=MET PE=1 SV=2)

HSP 1 Score: 305.834 bits (782), Expect = 8.691e-83
Identity = 158/179 (88.27%), Postives = 166/179 (92.74%), Query Frame = 3
Query:    6 LEGVVGKDKLVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGFFSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELDIDVLVHGEP 542
            LEG+VGKDKLVVSTS SLLHTAVDLVNE KLD EIKSWLAFAAQK+VEVNALAKAL G KDE FFS NAAAQASRKSSPRV NE VQKAAAAL+GS+HRR TNVSARLDAQQKKLNLPILPTTTIGSFPQT+ELRRVRRE+K  +ISEEEYV +IKEEINKVVKLQEELDIDVLVHGEP
Sbjct:  312 LEGIVGKDKLVVSTSSSLLHTAVDLVNEPKLDQEIKSWLAFAAQKIVEVNALAKALTGHKDEAFFSPNAAAQASRKSSPRVNNEAVQKAAAALRGSEHRRVTNVSARLDAQQKKLNLPILPTTTIGSFPQTVELRRVRREFKPTRISEEEYVKAIKEEINKVVKLQEELDIDVLVHGEP 490          
BLAST of CF509963 vs. ExPASy Swiss-Prot
Match: METE_BURA4 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia ambifaria (strain MC40-6) GN=metE PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.927e-38
Identity = 85/173 (49.13%), Postives = 116/173 (67.05%), Query Frame = 3
Query:   27 DKLVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDE--GFFSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELDIDVLVHGE 539
            ++L ++ SCSLLH  VDL +E KLD EI+SWLAFA QK+ E+N LA AL   +D+     +ANAAA  SR+ SPRV N  V+ A A +      RA+  + R   Q  +LNLP  PTTTIGSFPQT ++R+ RR++K+  + E  Y A+++ EI + V+ QE L++DVLVHGE
Sbjct:  321 ERLWIAPSCSLLHVPVDLASEQKLDPEIRSWLAFALQKLDELNVLATALNEGRDKVADALAANAAAIDSRRRSPRVNNPAVKAALARIDAQLGNRASPYTQRAPKQSARLNLPAFPTTTIGSFPQTADIRQARRQFKSGALDEAGYRAAMQAEIERSVREQESLELDVLVHGE 493          
BLAST of CF509963 vs. ExPASy Swiss-Prot
Match: METE_RALSO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Ralstonia solanacearum GN=metE PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 6.521e-38
Identity = 84/173 (48.55%), Postives = 115/173 (66.47%), Query Frame = 3
Query:   27 DKLVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGF--FSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELDIDVLVHGE 539
            ++L ++ SCSLLH  VDL  E +LDDE+K WLAFA QK+ E+  L +A+   +D      + +AAA ASR +S RV N+ V+K AAA++  D  RA     R  AQQ +LNLP+LPTTTIGSFPQT E+R+ R +YK  ++    Y+  ++ EI  VV+ QE L +D+LVHGE
Sbjct:  313 ERLWLAPSCSLLHVPVDLAAETRLDDELKGWLAFARQKLDELAVLKRAVIDGRDAAHAALAGSAAAIASRAASRRVHNDSVKKRAAAIRAQDAERAAPYPVRAAAQQARLNLPLLPTTTIGSFPQTAEIRQARAQYKRGELQALTYLERMRAEIADVVQRQEALGLDMLVHGE 485          
BLAST of CF509963 vs. ExPASy Swiss-Prot
Match: METE_PSEE4 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas entomophila (strain L48) GN=metE PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.897e-37
Identity = 85/174 (48.85%), Postives = 112/174 (64.37%), Query Frame = 3
Query:   27 DKLVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGFFSANA---AAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELDIDVLVHGE 539
            D+L V+ SCSLLH+ VDL  E+KLDDE+KSWLAFA QK  EV  LAKA+   +     +  A   A Q  R +SPR+    VQ   AA+K +D +RAT    R+  Q+  L+LP  PTTTIGSFPQT  +R  R+ +K  K++E +YV ++  EI   V++QE L +DVLVHGE
Sbjct:  319 DRLWVAPSCSLLHSPVDLAREDKLDDELKSWLAFAVQKCQEVALLAKAINQPEAADVVTVLAQSRAVQHRRATSPRIHKPAVQARVAAIKPADSQRATAFEQRIAKQRAGLDLPAFPTTTIGSFPQTSAIRLARQSFKQGKLTEADYVEAMHSEIRHAVEIQENLGLDVLVHGE 492          
BLAST of CF509963 vs. ExPASy Swiss-Prot
Match: METE_RALPJ (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Ralstonia pickettii (strain 12J) GN=metE PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.478e-37
Identity = 86/173 (49.71%), Postives = 112/173 (64.74%), Query Frame = 3
Query:   27 DKLVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKD--EGFFSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELDIDVLVHGE 539
            D+L ++ SCSLLH  VDL  E KLDDE+K WLAFA QK+ E+  + +AL       +G    N  A ASR  S RV N  V+K  AA++ +D  RA    AR DAQQ +LNLP+LPTTTIGSFPQT E+RR R ++K   +   +Y+  ++ EI  VV+ QE L +D+LVHGE
Sbjct:  316 DRLWIAPSCSLLHVPVDLSAETKLDDELKGWLAFARQKLDELAVIKRALVEGPAAVQGELDDNRIAIASRTQSRRVHNAGVKKRVAAIRAADAVRAAPYPARADAQQARLNLPLLPTTTIGSFPQTPEIRRARAQHKRGDLPALDYLQRMRTEIADVVRRQEALGLDMLVHGE 488          
BLAST of CF509963 vs. ExPASy Swiss-Prot
Match: METE_BORA1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bordetella avium (strain 197N) GN=metE PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.478e-37
Identity = 83/175 (47.43%), Postives = 119/175 (68.00%), Query Frame = 3
Query:   27 DKLVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGF---FSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELDIDVLVHGEP 542
            D+L ++ SCSLLH  VDL+ E +LD E+KSWL+FA+QK+ E++ L +AL G   +      +A  AA A+R+SSPR+ N  V +  AA +     RA   + R+  QQ +LNLP  PTTTIGSFPQT E+R +RR++K+  +S+  Y A I++EI  V++ QE++ +DVLVHGEP
Sbjct:  323 DRLWLAPSCSLLHVPVDLLAETELDAELKSWLSFASQKLDELSLLGRALDGDSSQAVQEGLAAQRAALAARRSSPRIHNPAVGRRMAASEQVSRDRAP-FAERIRQQQARLNLPPFPTTTIGSFPQTAEIRGLRRDWKSGALSDSTYEALIRKEIEAVIRFQEKVGLDVLVHGEP 496          
BLAST of CF509963 vs. ExPASy Swiss-Prot
Match: METE_BURCJ (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=metE PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.236e-37
Identity = 86/173 (49.71%), Postives = 111/173 (64.16%), Query Frame = 3
Query:   27 DKLVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDE--GFFSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELDIDVLVHGE 539
            D+L ++ SCSLLH  VDL NE KLD EI+SWLAFA QK+ E+  LA AL   +D      +ANAAA  SR+ SPRV N  V+ A A +      RA+  + R   Q  +LNLP  PTTTIGSFPQT E+R+ R  +KA  + E  Y  +++ EI + V+ QE L++DVLVHGE
Sbjct:  321 DRLWLAPSCSLLHVPVDLANEAKLDAEIRSWLAFALQKLDELKVLATALNEGRDTVADALAANAAAIESRRRSPRVNNPAVKAAIARIDARLGNRASPYAQRASKQSARLNLPAFPTTTIGSFPQTAEIRQARSRFKAGTLDEAGYRTAMQAEIERSVREQESLELDVLVHGE 493          
The following BLAST results are available for this feature:
BLAST of CF509963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 269
Match NameE-valueIdentityDescription
METE_ARATH1.296e-8691.625-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MESCR1.692e-8691.625-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CATRO1.097e-8590.505-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SOLSC8.691e-8388.275-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURA42.927e-3849.135-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RALSO6.521e-3848.555-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEE41.897e-3748.855-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RALPJ2.478e-3749.715-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BORA12.478e-3747.435-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURCJ3.236e-3749.715-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-477 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509963 ID=CF509963; Name=CF509963; organism=Citrus sinensis; type=EST; length=551bp
GGGGGCTTGAGGGTGTTGTTGGCAAAGACAAGCTTGTGGTCTCCACCTCC
TGCTCACTTCTTCACACTGCTGTTGATCTTGTTAATGAGAACAAACTCGA
CGACGAAATCAAGTCATGGCTGGCATTTGCTGCCCAGAAAGTTGTTGAAG
TGAATGCATTGGCCAAGGCTTTGGCTGGCCAAAAGGATGAGGGATTCTTC
TCTGCCAATGCTGCAGCTCAGGCTTCAAGAAAGTCCTCCCCGAGAGTGAC
CAATGAGAGAGTTCAAAAGGCTGCTGCTGCTTTGAAAGGATCAGACCACA
GACGTGCTACAAATGTTAGTGCTAGATTAGATGCTCAACAGAAGAAGCTC
AATCTTCCAATCCTCCCAACCACCACAATTGGATCCTTCCCACAAACCAT
TGAACTTAGGAGAGTCCGCCGTGAATACAAGGCTAAGAAGATTTCTGAGG
AAGAATATGTTGCTTCCATCAAGGAGGAAATCAACAAGGTTGTCAAACTC
CAAGAAGAGCTTGATATTGATGTCCTTGTCCATGGAGAGCCCTGAGAGGA
A
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