CF509973

Overview
NameCF509973
Unique NameCF509973
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length539
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5289 contig Csv1_Contig5289:478..1016. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509973 vs. ExPASy Swiss-Prot
Match: U2A2A_NICPL (Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia GN=U2AF65A PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 1.960e-76
Identity = 136/175 (77.71%), Postives = 151/175 (86.29%), Query Frame = 2
Query:    2 PGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTE 526
            PG   A+P +  NM P  ++Q GA P+MPVQ MTQQATRHARRVYVGGLPP ANEQ++ATFFS VM AIGGN+AGPGDAVVNVYINHEKKFAFVEMR+VEEASNAMALDG+IFEG  V+VRRP+DYNP+LAA LGP QPSPNLNLAAVG   G+ GG EGPDR+FVGGLPYYFTE
Sbjct:  180 PGTNPAIPGLFSNMFPLASSQFGALPMMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGVIFEGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGSTPGSSGGLEGPDRIFVGGLPYYFTE 354          
BLAST of CF509973 vs. ExPASy Swiss-Prot
Match: U2A2B_ARATH (Splicing factor U2af large subunit B OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2)

HSP 1 Score: 283.493 bits (724), Expect = 4.366e-76
Identity = 139/180 (77.22%), Postives = 157/180 (87.22%), Query Frame = 2
Query:    2 PGVPSA--VPEMAQNMLPF-GATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTELR 532
            P VP+   +P M  NM P     QLGA P++PVQ MTQQATRHARRVYVGGLPP ANEQ+++TFFSQVM+AIGGN+AGPGDAVVNVYINHEKKFAFVEMR+VEEASNAMALDGII EGV V+VRRPTDYNP+LAA LGP QP+PNLNL AVGL+SG+ GG EGPDR+FVGGLPYYFTE++
Sbjct:  211 PSVPTTATIPGMFSNMFPMVPGQQLGALPVLPVQAMTQQATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLSSGSTGGLEGPDRIFVGGLPYYFTEVQ 390          
BLAST of CF509973 vs. ExPASy Swiss-Prot
Match: U2A2B_NICPL (Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 1.834e-74
Identity = 133/175 (76.00%), Postives = 150/175 (85.71%), Query Frame = 2
Query:    2 PGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTE 526
            PG    +P M  NM P  + Q GA P+MP+Q MTQQATRHARRVYVGGLP  ANEQ++ATFFS VM+AIGGN+AGPGDAVVNVYIN+EKKFAFVEMR+VEEASNAMALDGIIFEG   +VRRP+DYNP+LAA LGP QP+PNLNLAAVGL+ G+ GG EGPDR+FVGGLPYYFTE
Sbjct:  198 PGTNPPIPGMFPNMFPLASGQFGALPVMPIQAMTQQATRHARRVYVGGLPAHANEQSVATFFSHVMSAIGGNTAGPGDAVVNVYINYEKKFAFVEMRSVEEASNAMALDGIIFEGAPCKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLSPGSAGGLEGPDRIFVGGLPYYFTE 372          
BLAST of CF509973 vs. ExPASy Swiss-Prot
Match: U2A2B_ORYSJ (Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica GN=U2AF65B PE=2 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 2.929e-72
Identity = 131/171 (76.61%), Postives = 147/171 (85.96%), Query Frame = 2
Query:   14 SAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTE 526
            +A+P M  NMLP G  Q     + P Q MTQQATRHARRVYVGGLPP ANEQ++A +F+QVM AIGGN+AGPGDAV+NVYINH+KKFAFVEMR+VEEASNAMALDGI+FEG  V+VRRPTDYNP+LAAALGP QPSPNLNLAAVGL  G+ GG EGPDR+FVGGLPYYFTE
Sbjct:  178 TAIPGMFPNMLPMGVGQFNPLVIQP-QAMTQQATRHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTE 347          
BLAST of CF509973 vs. ExPASy Swiss-Prot
Match: U2A2A_ARATH (Splicing factor U2af large subunit A OS=Arabidopsis thaliana GN=U2AF65A PE=2 SV=2)

HSP 1 Score: 267.7 bits (683), Expect = 2.479e-71
Identity = 133/178 (74.72%), Postives = 147/178 (82.58%), Query Frame = 2
Query:    2 PGVPSAVPE--MAQNMLPFGATQ-LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTE 526
            P  P  +P   M  NM P    Q  G   +MP+Q MTQQATRHARRVYVGGL P ANEQ++ATFFSQVM A+GGN+AGPGDAVVNVYINHEKKFAFVEMR+VEEASNAM+LDGIIFEG  V+VRRP+DYNP+LAA LGP QPSP+LNLAAVGL  GA GG EGPDR+FVGGLPYYFTE
Sbjct:  195 PPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPIQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTPGASGGLEGPDRIFVGGLPYYFTE 372          
BLAST of CF509973 vs. ExPASy Swiss-Prot
Match: U2A2B_WHEAT (Splicing factor U2af large subunit B OS=Triticum aestivum GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 3.238e-71
Identity = 130/171 (76.02%), Postives = 147/171 (85.96%), Query Frame = 2
Query:   14 SAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTE 526
            S++P M  NMLPF   Q+    + P Q MTQQATRHARRVYVGGLPP ANEQ++A +F+QVM AIGGN+AGPGDAV+NVYINH+KKFAFVEMR+VEEASNAMALDGI+FEG  V+VRRPTDYNP+LAAALGP QPS NLNLAAVGL  G+ GG EGPDR+FVGGLPYYFTE
Sbjct:  171 SSIPGMFPNMLPFADGQINPLVMQP-QAMTQQATRHARRVYVGGLPPSANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSSNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTE 340          
BLAST of CF509973 vs. ExPASy Swiss-Prot
Match: U2A2A_ORYSJ (Splicing factor U2af large subunit A OS=Oryza sativa subsp. japonica GN=U2AF65A PE=2 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 2.566e-68
Identity = 129/176 (73.30%), Postives = 145/176 (82.39%), Query Frame = 2
Query:    2 PGVPSAVPEMAQNMLPFGATQLGAFPLM-PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTE 526
            P V  A+  M  NM  F  TQ    PL+   Q MTQQATRHARRVYVGGLPP ANE  +A +F+QVM A+GGN+AGPGDAV+NVYINH+KKFAFVEMR+VEEASNAMALDGI+FEG  V+VRRPTDYNP+LAAALGP QP+PNLNLAAVGL  G+ GG EGPDR+FVGGLPYYFTE
Sbjct:  198 PVVAPAISGMLPNM--FNLTQTPFTPLVIQPQAMTQQATRHARRVYVGGLPPTANEHTVAVYFNQVMAAVGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTE 371          
BLAST of CF509973 vs. ExPASy Swiss-Prot
Match: U2A2A_WHEAT (Splicing factor U2af large subunit A OS=Triticum aestivum GN=U2AF65A PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 5.350e-66
Identity = 130/177 (73.45%), Postives = 143/177 (80.79%), Query Frame = 2
Query:    2 PGVPSAVPEMAQNMLP--FGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTE 526
            P +P+A P M  NMLP       LG  PL     MTQQATRHARRVYVGGLPP+ANEQ +A FF+QVM AIGGN+   G AVVNVYINH+KKFAFVEMR+VEEASNAMALDGI+FEG  V+VRRPTDYNP+ AAALGP QP+PNLNLAAVGL  GA GG EGPDR+FVGGLPYYFTE
Sbjct:  234 PELPAANPGMFPNMLPNLVNVPALGQ-PL----AMTQQATRHARRVYVGGLPPIANEQTVAVFFNQVMAAIGGNTFALGHAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSQAAALGPSQPNPNLNLAAVGLTPGAGGGLEGPDRIFVGGLPYYFTE 405          
BLAST of CF509973 vs. ExPASy Swiss-Prot
Match: U2AF2_MOUSE (Splicing factor U2AF 65 kDa subunit OS=Mus musculus GN=U2af2 PE=1 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 1.128e-23
Identity = 61/147 (41.50%), Postives = 90/147 (61.22%), Query Frame = 2
Query:   86 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTE 526
            PV V+  Q TR ARR+YVG +P    E+A+  FF+  M  +GG +  PG+ V+ V IN +K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P       PG  S N ++   G+ S  +   +   ++F+GGLP Y  +
Sbjct:  136 PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLND 272          
BLAST of CF509973 vs. ExPASy Swiss-Prot
Match: U2AF2_HUMAN (Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1 SV=4)

HSP 1 Score: 109.383 bits (272), Expect = 1.128e-23
Identity = 61/147 (41.50%), Postives = 90/147 (61.22%), Query Frame = 2
Query:   86 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTE 526
            PV V+  Q TR ARR+YVG +P    E+A+  FF+  M  +GG +  PG+ V+ V IN +K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P       PG  S N ++   G+ S  +   +   ++F+GGLP Y  +
Sbjct:  136 PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLND 272          
The following BLAST results are available for this feature:
BLAST of CF509973 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
U2A2A_NICPL1.960e-7677.71Splicing factor U2af large subunit A OS=Nicotiana ... [more]
U2A2B_ARATH4.366e-7677.22Splicing factor U2af large subunit B OS=Arabidopsi... [more]
U2A2B_NICPL1.834e-7476.00Splicing factor U2af large subunit B OS=Nicotiana ... [more]
U2A2B_ORYSJ2.929e-7276.61Splicing factor U2af large subunit B OS=Oryza sati... [more]
U2A2A_ARATH2.479e-7174.72Splicing factor U2af large subunit A OS=Arabidopsi... [more]
U2A2B_WHEAT3.238e-7176.02Splicing factor U2af large subunit B OS=Triticum a... [more]
U2A2A_ORYSJ2.566e-6873.30Splicing factor U2af large subunit A OS=Oryza sati... [more]
U2A2A_WHEAT5.350e-6673.45Splicing factor U2af large subunit A OS=Triticum a... [more]
U2AF2_MOUSE1.128e-2341.50Splicing factor U2AF 65 kDa subunit OS=Mus musculu... [more]
U2AF2_HUMAN1.128e-2341.50Splicing factor U2AF 65 kDa subunit OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-487 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509973 ID=CF509973; Name=CF509973; organism=Citrus sinensis; type=EST; length=539bp
GCCTGGTGTACCTTCAGCAGTTCCAGAAATGGCACAAAACATGTTACCTT
TTGGAGCGACACAGTTGGGCGCTTTTCCATTGATGCCGGTACAAGTCATG
ACTCAACAGGCCACGAGGCATGCTCGCCGAGTATATGTTGGTGGGCTTCC
TCCTTTGGCTAATGAACAGGCAATTGCTACATTCTTTAGCCAAGTTATGA
CTGCTATTGGAGGAAATTCTGCTGGTCCTGGTGATGCAGTAGTGAATGTT
TACATCAATCATGAGAAGAAATTTGCATTTGTGGAGATGAGAACTGTTGA
AGAAGCGAGTAATGCAATGGCATTAGATGGGATTATATTTGAGGGGGTTG
CTGTGAGGGTAAGAAGACCTACGGATTACAACCCTACATTAGCTGCAGCA
CTTGGTCCAGGCCAACCAAGTCCGAATCTTAACTTGGCAGCTGTTGGACT
TGCATCAGGTGCAATTGGTGGAGCAGAGGGACCTGATCGGGTCTTTGTGG
GTGGATTACCATACTACTTCACTGAACTCAGATAAAAGA
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