CF509973
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF509973 vs. ExPASy Swiss-Prot
Match: U2A2A_NICPL (Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia GN=U2AF65A PE=2 SV=1) HSP 1 Score: 284.648 bits (727), Expect = 1.960e-76 Identity = 136/175 (77.71%), Postives = 151/175 (86.29%), Query Frame = 2 Query: 2 PGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTE 526 PG A+P + NM P ++Q GA P+MPVQ MTQQATRHARRVYVGGLPP ANEQ++ATFFS VM AIGGN+AGPGDAVVNVYINHEKKFAFVEMR+VEEASNAMALDG+IFEG V+VRRP+DYNP+LAA LGP QPSPNLNLAAVG G+ GG EGPDR+FVGGLPYYFTE Sbjct: 180 PGTNPAIPGLFSNMFPLASSQFGALPMMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGVIFEGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGSTPGSSGGLEGPDRIFVGGLPYYFTE 354
BLAST of CF509973 vs. ExPASy Swiss-Prot
Match: U2A2B_ARATH (Splicing factor U2af large subunit B OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2) HSP 1 Score: 283.493 bits (724), Expect = 4.366e-76 Identity = 139/180 (77.22%), Postives = 157/180 (87.22%), Query Frame = 2 Query: 2 PGVPSA--VPEMAQNMLPF-GATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTELR 532 P VP+ +P M NM P QLGA P++PVQ MTQQATRHARRVYVGGLPP ANEQ+++TFFSQVM+AIGGN+AGPGDAVVNVYINHEKKFAFVEMR+VEEASNAMALDGII EGV V+VRRPTDYNP+LAA LGP QP+PNLNL AVGL+SG+ GG EGPDR+FVGGLPYYFTE++ Sbjct: 211 PSVPTTATIPGMFSNMFPMVPGQQLGALPVLPVQAMTQQATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLSSGSTGGLEGPDRIFVGGLPYYFTEVQ 390
BLAST of CF509973 vs. ExPASy Swiss-Prot
Match: U2A2B_NICPL (Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1) HSP 1 Score: 278.1 bits (710), Expect = 1.834e-74 Identity = 133/175 (76.00%), Postives = 150/175 (85.71%), Query Frame = 2 Query: 2 PGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTE 526 PG +P M NM P + Q GA P+MP+Q MTQQATRHARRVYVGGLP ANEQ++ATFFS VM+AIGGN+AGPGDAVVNVYIN+EKKFAFVEMR+VEEASNAMALDGIIFEG +VRRP+DYNP+LAA LGP QP+PNLNLAAVGL+ G+ GG EGPDR+FVGGLPYYFTE Sbjct: 198 PGTNPPIPGMFPNMFPLASGQFGALPVMPIQAMTQQATRHARRVYVGGLPAHANEQSVATFFSHVMSAIGGNTAGPGDAVVNVYINYEKKFAFVEMRSVEEASNAMALDGIIFEGAPCKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLSPGSAGGLEGPDRIFVGGLPYYFTE 372
BLAST of CF509973 vs. ExPASy Swiss-Prot
Match: U2A2B_ORYSJ (Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica GN=U2AF65B PE=2 SV=2) HSP 1 Score: 270.781 bits (691), Expect = 2.929e-72 Identity = 131/171 (76.61%), Postives = 147/171 (85.96%), Query Frame = 2 Query: 14 SAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTE 526 +A+P M NMLP G Q + P Q MTQQATRHARRVYVGGLPP ANEQ++A +F+QVM AIGGN+AGPGDAV+NVYINH+KKFAFVEMR+VEEASNAMALDGI+FEG V+VRRPTDYNP+LAAALGP QPSPNLNLAAVGL G+ GG EGPDR+FVGGLPYYFTE Sbjct: 178 TAIPGMFPNMLPMGVGQFNPLVIQP-QAMTQQATRHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTE 347
BLAST of CF509973 vs. ExPASy Swiss-Prot
Match: U2A2A_ARATH (Splicing factor U2af large subunit A OS=Arabidopsis thaliana GN=U2AF65A PE=2 SV=2) HSP 1 Score: 267.7 bits (683), Expect = 2.479e-71 Identity = 133/178 (74.72%), Postives = 147/178 (82.58%), Query Frame = 2 Query: 2 PGVPSAVPE--MAQNMLPFGATQ-LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTE 526 P P +P M NM P Q G +MP+Q MTQQATRHARRVYVGGL P ANEQ++ATFFSQVM A+GGN+AGPGDAVVNVYINHEKKFAFVEMR+VEEASNAM+LDGIIFEG V+VRRP+DYNP+LAA LGP QPSP+LNLAAVGL GA GG EGPDR+FVGGLPYYFTE Sbjct: 195 PPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPIQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTPGASGGLEGPDRIFVGGLPYYFTE 372
BLAST of CF509973 vs. ExPASy Swiss-Prot
Match: U2A2B_WHEAT (Splicing factor U2af large subunit B OS=Triticum aestivum GN=U2AF65B PE=2 SV=1) HSP 1 Score: 267.314 bits (682), Expect = 3.238e-71 Identity = 130/171 (76.02%), Postives = 147/171 (85.96%), Query Frame = 2 Query: 14 SAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTE 526 S++P M NMLPF Q+ + P Q MTQQATRHARRVYVGGLPP ANEQ++A +F+QVM AIGGN+AGPGDAV+NVYINH+KKFAFVEMR+VEEASNAMALDGI+FEG V+VRRPTDYNP+LAAALGP QPS NLNLAAVGL G+ GG EGPDR+FVGGLPYYFTE Sbjct: 171 SSIPGMFPNMLPFADGQINPLVMQP-QAMTQQATRHARRVYVGGLPPSANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSSNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTE 340
BLAST of CF509973 vs. ExPASy Swiss-Prot
Match: U2A2A_ORYSJ (Splicing factor U2af large subunit A OS=Oryza sativa subsp. japonica GN=U2AF65A PE=2 SV=2) HSP 1 Score: 257.684 bits (657), Expect = 2.566e-68 Identity = 129/176 (73.30%), Postives = 145/176 (82.39%), Query Frame = 2 Query: 2 PGVPSAVPEMAQNMLPFGATQLGAFPLM-PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTE 526 P V A+ M NM F TQ PL+ Q MTQQATRHARRVYVGGLPP ANE +A +F+QVM A+GGN+AGPGDAV+NVYINH+KKFAFVEMR+VEEASNAMALDGI+FEG V+VRRPTDYNP+LAAALGP QP+PNLNLAAVGL G+ GG EGPDR+FVGGLPYYFTE Sbjct: 198 PVVAPAISGMLPNM--FNLTQTPFTPLVIQPQAMTQQATRHARRVYVGGLPPTANEHTVAVYFNQVMAAVGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTE 371
BLAST of CF509973 vs. ExPASy Swiss-Prot
Match: U2A2A_WHEAT (Splicing factor U2af large subunit A OS=Triticum aestivum GN=U2AF65A PE=2 SV=1) HSP 1 Score: 249.98 bits (637), Expect = 5.350e-66 Identity = 130/177 (73.45%), Postives = 143/177 (80.79%), Query Frame = 2 Query: 2 PGVPSAVPEMAQNMLP--FGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTE 526 P +P+A P M NMLP LG PL MTQQATRHARRVYVGGLPP+ANEQ +A FF+QVM AIGGN+ G AVVNVYINH+KKFAFVEMR+VEEASNAMALDGI+FEG V+VRRPTDYNP+ AAALGP QP+PNLNLAAVGL GA GG EGPDR+FVGGLPYYFTE Sbjct: 234 PELPAANPGMFPNMLPNLVNVPALGQ-PL----AMTQQATRHARRVYVGGLPPIANEQTVAVFFNQVMAAIGGNTFALGHAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSQAAALGPSQPNPNLNLAAVGLTPGAGGGLEGPDRIFVGGLPYYFTE 405
BLAST of CF509973 vs. ExPASy Swiss-Prot
Match: U2AF2_MOUSE (Splicing factor U2AF 65 kDa subunit OS=Mus musculus GN=U2af2 PE=1 SV=3) HSP 1 Score: 109.383 bits (272), Expect = 1.128e-23 Identity = 61/147 (41.50%), Postives = 90/147 (61.22%), Query Frame = 2 Query: 86 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTE 526 PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+ V IN +K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S N ++ G+ S + + ++F+GGLP Y + Sbjct: 136 PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLND 272
BLAST of CF509973 vs. ExPASy Swiss-Prot
Match: U2AF2_HUMAN (Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1 SV=4) HSP 1 Score: 109.383 bits (272), Expect = 1.128e-23 Identity = 61/147 (41.50%), Postives = 90/147 (61.22%), Query Frame = 2 Query: 86 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTE 526 PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+ V IN +K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S N ++ G+ S + + ++F+GGLP Y + Sbjct: 136 PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLND 272 The following BLAST results are available for this feature:
BLAST of CF509973 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 13
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Sequences
The
following sequences are available for this feature:
EST sequence >CF509973 ID=CF509973; Name=CF509973; organism=Citrus sinensis; type=EST; length=539bpback to top |