CF509975

Overview
NameCF509975
Unique NameCF509975
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length493
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509975 vs. ExPASy Swiss-Prot
Match: IMB1_MOUSE (Importin subunit beta-1 OS=Mus musculus GN=Kpnb1 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.327e-38
Identity = 82/165 (49.70%), Postives = 106/165 (64.24%), Query Frame = 1
Query:   13 GQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGS-----PKTQLLMPYAPHILQFLD 492
            G +FLKYM  F  ++ +GL+N+ +YQVC   VG+VGDLCRAL+  ILP+CD +M  LL++L +  +HRSVKP I S FGDIALAIG  F+KYL   +  LQ A++  V  S  D DM +Y N LR   LEA++GI QG KG      P   L+ P    IL F+D
Sbjct:  640 GGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNILPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKS--DFDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFID 802          
BLAST of CF509975 vs. ExPASy Swiss-Prot
Match: IMB1_HUMAN (Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 2.264e-38
Identity = 81/165 (49.09%), Postives = 106/165 (64.24%), Query Frame = 1
Query:   13 GQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGS-----PKTQLLMPYAPHILQFLD 492
            G +FLKYM  F  ++ +GL+N+ +YQVC   VG+VGDLCRAL+  I+P+CD +M  LL++L +  +HRSVKP I S FGDIALAIG  F+KYL   +  LQ A++  V  S  D DM +Y N LR   LEA++GI QG KG      P   L+ P    IL F+D
Sbjct:  640 GGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKS--DYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFID 802          
BLAST of CF509975 vs. ExPASy Swiss-Prot
Match: IMB1_RAT (Importin subunit beta-1 OS=Rattus norvegicus GN=Kpnb1 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 4.270e-37
Identity = 80/165 (48.48%), Postives = 104/165 (63.03%), Query Frame = 1
Query:   13 GQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGS-----PKTQLLMPYAPHILQFLD 492
            G +FLKYM  F  ++ +GL+N+ + QVC   VG+VGDLCRAL+  ILP+CD +M  LL++L +  +HRSVKP I S FGDI LAIG  F+KYL   +  LQ A++  V  S  D DM +Y N LR   LEA++GI QG KG      P   L+ P    IL F+D
Sbjct:  639 GGEFLKYMEAFKPFLGIGLKNYAECQVCLAAVGLVGDLCRALQSNILPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDITLAIGGEFKKYLEVVLNTLQQASQAQVDKS--DFDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFID 801          
BLAST of CF509975 vs. ExPASy Swiss-Prot
Match: IMB_DROME (Importin subunit beta OS=Drosophila melanogaster GN=Fs(2)Ket PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 6.817e-35
Identity = 75/164 (45.73%), Postives = 105/164 (64.02%), Query Frame = 1
Query:   13 GQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKT-----QLLMPYAPHILQFL 489
            G  F KYMP F  ++ MGL+NF++YQVC   VG+ GD+ RAL+D ++PY + IMT L+ +L+   +HR+VKP + S FGDIAL+IG +F  YL   + ML+ A+ L   T   + DM EY N LR  ILEA++GI QG KG  +T       + P+  HI+ F+
Sbjct:  646 GAQFAKYMPAFKDFLVMGLKNFQEYQVCCAAVGLTGDIFRALKDLMVPYSNEIMTVLINNLTEPTIHRTVKPQVLSAFGDIALSIGNHFLPYLSMVLDMLRVASNL--QTDANNFDMNEYINELRESILEAYTGIIQGLKGVDQTAHTDVMHMEPHLMHIISFI 807          
BLAST of CF509975 vs. ExPASy Swiss-Prot
Match: IMB1_SCHPO (Importin subunit beta-1 OS=Schizosaccharomyces pombe GN=kap95 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 8.333e-33
Identity = 70/159 (44.03%), Postives = 100/159 (62.89%), Query Frame = 1
Query:   16 QDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLD 492
            + F  Y+P F  ++   L N ++YQ+C++ VG+VGDL RAL  KILPYCD  MT+L++DL S+ L R+VKP I SCF DIALAIG  F+ YL   M +LQ A+ +     G +  M +Y ++LR GI+EA+ GI Q  +   +  L+ PY   +   L+
Sbjct:  632 EQFEVYVPSFVPFLSSALSNEQEYQLCSVAVGLVGDLARALNAKILPYCDDFMTRLVQDLQSSVLDRNVKPAILSCFSDIALAIGAAFQTYLEAVMVLLQQASSVQA-PPGANFSMIDYVDALRLGIVEAYVGITQAVRTDNRLDLIQPYVHSMFTLLN 789          
BLAST of CF509975 vs. ExPASy Swiss-Prot
Match: IMB1_YEAST (Importin subunit beta-1 OS=Saccharomyces cerevisiae GN=KAP95 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.521e-13
Identity = 50/163 (30.67%), Postives = 76/163 (46.63%), Query Frame = 1
Query:    1 AYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFL 489
            A + G+ F KY+  F  Y+   L N  D  V    VG + D+  +LE+    Y D +M  L + +S+    R +KP + S FGDIA  IG +F  YL   M +  +A         +  +  +Y   +   +L+A+ GI  G    P  + L PY   I QF+
Sbjct:  626 AASLGKGFEKYLETFSPYLLKAL-NQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTL--EALDYQIKVLEAVLDAYVGIVAGLHDKP--EALFPYVGTIFQFI 783          
The following BLAST results are available for this feature:
BLAST of CF509975 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
IMB1_MOUSE1.327e-3849.70Importin subunit beta-1 OS=Mus musculus GN=Kpnb1 P... [more]
IMB1_HUMAN2.264e-3849.09Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 P... [more]
IMB1_RAT4.270e-3748.48Importin subunit beta-1 OS=Rattus norvegicus GN=Kp... [more]
IMB_DROME6.817e-3545.73Importin subunit beta OS=Drosophila melanogaster G... [more]
IMB1_SCHPO8.333e-3344.03Importin subunit beta-1 OS=Schizosaccharomyces pom... [more]
IMB1_YEAST2.521e-1330.67Importin subunit beta-1 OS=Saccharomyces cerevisia... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-489 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509975 ID=CF509975; Name=CF509975; organism=Citrus sinensis; type=EST; length=493bp
GCCTATGCAACAGGTCAAGATTTTCTTAAATACATGCCAGAGTTTTACAA
GTATGTGGAAATGGGTCTTCAAAATTTTGAGGATTACCAGGTTTGTGCCA
TCACCGTAGGTGTTGTTGGGGACTTATGCAGGGCTCTGGAGGATAAGATA
TTGCCTTATTGTGATGGGATTATGACTCAACTTCTCAAGGATTTGTCCAG
CAATCAGTTGCATAGATCTGTGAAGCCTCCTATCTTTTCATGCTTTGGCG
ACATTGCTTTGGCCATTGGGGAGAACTTTGAGAAGTACTTGATGTATGCT
ATGCCCATGCTTCAGAGTGCAGCAGAGCTATCAGTCCATACATCTGGTGT
TGATGATGACATGACGGAGTACACCAATTCTTTGAGAAATGGAATCTTAG
AGGCATTCTCTGGGATCTTTCAAGGTTTTAAGGGCTCGCCAAAAACCCAG
CTGTTGATGCCTTATGCTCCTCATATTCTTCAGTTCTTAGATA
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