CF509979

Overview
NameCF509979
Unique NameCF509979
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509979 vs. ExPASy Swiss-Prot
Match: DYR_SCHPO (Dihydrofolate reductase OS=Schizosaccharomyces pombe GN=dfr1 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.240e-16
Identity = 57/204 (27.94%), Postives = 89/204 (43.63%), Query Frame = 2
Query:   59 LKLLCLHGFRTSGKFLQKQLSKWDPSIFAHFDMDFPDGIFPAGGKSD------------IEGIFPPPYFEWFQFNKEFTEYTNLEECVSYLTEYITSNGPFDGLLGFSQGATLSALLLGYQAQGK---VLKEHPPMKLFVSISGSKFRDPSICEVAYKDTINVKSAHFIGAKDWL--RLPSEELATAFHKPLIIRHPQGHTVPR 619
            LK+LCLHG+  SG    K++      +  + ++ FP G   A  ++D            + G      F WF+       Y + +E +  + +Y+   GPFDGL+GFSQGA + A+L      G+      +HPP K  V + G +   P   +  Y   +   S H  G  D L     S++L        ++ HP  H VP+
Sbjct:    5 LKVLCLHGWIQSGPVFSKKMGSVQKYLSKYAELHFPTGPVVADEEADPNDEEEKKRLAALGGEQNGGKFGWFEVEDFKNTYGSWDESLECINQYMQEKGPFDGLIGFSQGAGIGAMLAQMLQPGQPPNPYVQHPPFKFVVFVGGFRAEKPEF-DHFYNPKLTTPSLHIAGTSDTLVPLARSKQLVERCENAHVLLHPGQHIVPQ 207          
BLAST of CF509979 vs. ExPASy Swiss-Prot
Match: U483_CAEBR (UPF0483 protein CBG03338 OS=Caenorhabditis briggsae GN=CBG03338 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 63/211 (29.86%), Postives = 101/211 (47.87%), Query Frame = 2
Query:   56 KLKLLCLHGFRTSGKFLQKQLSKWDPSIFAHFDMDFPDGIFPAGGKSDIEGIFPPPYFEWFQFNKEFTEYTNL----EECVSYLTEYITSNGPFDGLLGFSQGATLSALLLGYQAQGKVLKEHPPMKLFVSISG---SKFRDPSICEVAYKDTINVKSAHFIGAKDWL--RLPSEELATAFH-KPLIIRHPQGHTVPRLD---EAATELLR 649
            KL++LCLHG+R   +  +++       + A  D +F +GI         E      +    Q +    E T++    +E V+ + ++I  NGPFDGLLGFSQGA++  LL+     G++  + P ++  +  SG      +  ++  +  KD     S H  G  D +  R  SE+LA  F  +P+ I H  GH VP +    E  T+ LR
Sbjct:    6 KLRILCLHGYRQCDQSFRQKTGSTRKLVKALADFEFVNGIHSVAVDEHSETSRAWWFSNADQMSFSSREPTDVSVGFDESVNAVVKFIEDNGPFDGLLGFSQGASMVHLLIAKAQLGEI--KLPGIRFAIFFSGFLSLSSKHDTLTSLRIKD---FPSMHVFGDSDEIVARPKSEKLADQFDMEPIRIAHEGGHLVPSMSKHKERITQFLR 211          
BLAST of CF509979 vs. ExPASy Swiss-Prot
Match: U483_CAEEL (UPF0483 protein C25G4.2 OS=Caenorhabditis elegans GN=C25G4.2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.208e-12
Identity = 57/202 (28.22%), Postives = 93/202 (46.04%), Query Frame = 2
Query:   56 KLKLLCLHGFRTSGKFLQKQLSKWDPSIFAHFDMDFPDGIFPAGGKSDIEGIFPPPYFEWFQFN-------KEFTEYT-NLEECVSYLTEYITSNGPFDGLLGFSQGATLSALLLGYQAQGKVLKEHPPMKLFVSISGSKFRDPSICEVAYKDTINVKSAHFIGAKDWL--RLPSEELATAFH-KPLIIRHPQGHTVPRLDE 628
            KL++LCLHG+R   +  +++       + +  + +F +G+        ++         WF  N       +E TE     EE V+ + ++I  NGPFDGLLGFSQGA++  LL+     G++  + P ++  +  SG          +         S H  G  D +  R  SE++A  F  +PL I H  GH VP + +
Sbjct:    6 KLRILCLHGYRQCDQSFRQKTGSTRKLVKSLAEFEFVNGVHSVAVDEHVDS----SRAWWFSNNEAMSFSSRESTEVAVGFEESVAAVVKFIEENGPFDGLLGFSQGASMVHLLIAKAQLGEI--KLPGIRFAIFFSGFLSLSSKHDSLTLLRIKEFPSMHVFGDADEIVARPKSEKMADMFDVEPLRIAHDGGHVVPSMSK 201          
BLAST of CF509979 vs. ExPASy Swiss-Prot
Match: FSH3_YEAST (Family of serine hydrolases 3 OS=Saccharomyces cerevisiae GN=FSH3 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 64/212 (30.19%), Postives = 89/212 (41.98%), Query Frame = 2
Query:   56 KLKLLCLHGFRTSGKF-------LQKQLSKWDPSIF-----------AHFDMDFPDGIFPAGGKSDIEGIFPPPYFEWFQFNKE-FTEYTNLEECVSYLTEYITSNGPFDGLLGFSQGATLSALLLG--YQAQGKVLKEHPPMKLFVSISGSKFRDPSICEVAYKDTINVKSAHFIGAKDWLRLPSEELAT----AFHKPLIIRHPQGHTVP 616
            K K+L LHGF  S K        L+K L K    ++           A F  +   G   A  K           + WF  N E F  +   ++  +YL  Y+  NGPFDG++GFSQGA L   L+    +      ++ P +K F+S SG K  D S  +  Y   I V S H  G  D +   S  +A       +K  ++ HP  H VP
Sbjct:    4 KKKVLMLHGFVQSDKIFSAKTGGLRKNLKKLGYDLYYPCAPHSIDKKALFQSESEKGRDAA--KEFNTSATSDEVYGWFFRNPESFNSFQIDQKVFNYLRNYVLENGPFDGVIGFSQGAGLGGYLVTDFNRILNLTDEQQPALKFFISFSGFKLEDQSY-QKEYHRIIQVPSLHVRGELDEVVAESRIMALYESWPDNKRTLLVHPGAHFVP 212          
BLAST of CF509979 vs. ExPASy Swiss-Prot
Match: OVCA2_HUMAN (Ovarian cancer-associated gene 2 protein OS=Homo sapiens GN=OVCA2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 60/207 (28.99%), Postives = 92/207 (44.44%), Query Frame = 2
Query:   59 LKLLCLHGFRTSGKFLQKQLSKWDPSIFAHFDM-------DFPDGIFPAGGKSDIEGIFPP---PYFEWFQFNK--------EFTEYTNLEECVSYLTEYITSNGPFDGLLGFSQGATLSALLLGYQAQGKVLKEHPPMKLFVSISGSKFRDPSICEVAYKDTINVKSAHFIGAKDWLRLPSEE---LATAFHKPLIIRHPQGHTVP 616
            L++LCL GFR S +  +++      ++    ++         PD   P G +SD  G  PP   P   WF   +        E      LEE +  + + +   GPFDGLLGFSQGA L+AL+      G      P  +  + +SG   R     E   +  +++ S H  G  D + +PS+E   LA+ F   + + H  GH +P
Sbjct:    7 LRVLCLAGFRQSERGFREKTGALRKALRGRAELVCLSGPHPVPDPPGPEGARSDF-GSCPPEEQPRGWWFSEQEADVFSALEEPAVCRGLEESLGMVAQALNRLGPFDGLLGFSQGAALAALVCALGQAGD--PRFPLPRFILLVSGFCPRGIGFKESILQRPLSLPSLHVFGDTDKV-IPSQESVQLASQFPGAITLTHSGGHFIP 209          
The following BLAST results are available for this feature:
BLAST of CF509979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
DYR_SCHPO5.240e-1627.94Dihydrofolate reductase OS=Schizosaccharomyces pom... [more]
U483_CAEBR7.082e-1329.86UPF0483 protein CBG03338 OS=Caenorhabditis briggsa... [more]
U483_CAEEL1.208e-1228.22UPF0483 protein C25G4.2 OS=Caenorhabditis elegans ... [more]
FSH3_YEAST6.629e-1130.19Family of serine hydrolases 3 OS=Saccharomyces cer... [more]
OVCA2_HUMAN8.658e-1128.99Ovarian cancer-associated gene 2 protein OS=Homo s... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-493 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509979 ID=CF509979; Name=CF509979; organism=Citrus sinensis; type=EST; length=710bp
GAAAGAATGAAATAGAAAAAAAATGGAAGGCCAAAAGGAAAGCAACAATG
GTAATAAGCTGAAATTATTATGCCTCCATGGATTTAGAACCAGCGGGAAA
TTTCTTCAGAAACAACTTAGCAAGTGGGATCCTTCTATTTTTGCTCACTT
CGACATGGACTTCCCAGATGGGATTTTCCCGGCCGGCGGCAAATCTGATA
TAGAAGGCATATTTCCACCACCCTACTTCGAGTGGTTTCAATTCAACAAG
GAGTTCACAGAGTACACAAACCTGGAAGAATGCGTATCTTATTTAACTGA
ATACATTACAAGCAATGGCCCTTTTGATGGTTTACTCGGCTTCTCCCAGG
GTGCAACACTGTCGGCTCTTTTGCTGGGCTACCAAGCACAGGGGAAGGTG
TTGAAGGAGCATCCACCGATGAAATTATTTGTGTCAATATCAGGTTCAAA
GTTTAGGGATCCAAGCATATGCGAAGTTGCCTACAAAGACACCATCAATG
TGAAATCTGCCCACTTCATTGGAGCCAAGGACTGGTTGAGATTGCCCTCT
GAGGAGCTGGCCACTGCCTTCCACAAACCCCTCATCATAAGGCACCCCCA
AGGCCACACTGTCCCTAGACTTGATGAGGCAGCCACCGAGTTGCTTCGCG
GTTGGACCGTGGACATCCTCCGGTGCAATAATTGCGGTCTGATACCATTA
TGATGAATGG
back to top