CF509982

Overview
NameCF509982
Unique NameCF509982
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF509982_ssr578 microsatellite CF509982_ssr578:578..592. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4757 contig Csv1_Contig4757:290..1000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509982 vs. ExPASy Swiss-Prot
Match: FBW2_ARATH (F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2 PE=1 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.291e-62
Identity = 127/222 (57.21%), Postives = 154/222 (69.37%), Query Frame = 1
Query:   46 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEM-NDWDD-CSDY-SDGSEYLAWEFLAXXXXXXXXXXXXXXXXWDAEGRLEELELRFYDGIEEDAGIYGWPPSP 702
            AGSL+TL++PRS +++S V  +A +LS++TFLDLSYC KIG  A++AIGKHCK L   CRNMHPLD A  +S DDEA AIA+TMPKLKRLE+AYH +STE VLKILS C  LEFL+LRGCWDV+LD+KF K  FP++KVLGP V+ +Y+M NDW+D CSDY SDGS+YLAWEF                  WD     E   L        D   + WPPSP
Sbjct:  105 AGSLKTLKVPRSGLTNSGVVNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDEAYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFKEKFPDMKVLGPRVIGFYDMINDWEDCCSDYFSDGSDYLAWEFF-EDGVMGEFYEDEFEHGWDDNFYAENAVL--------DMEPHIWPPSP 317          
BLAST of CF509982 vs. ExPASy Swiss-Prot
Match: SKI19_ARATH (F-box protein SKIP19 OS=Arabidopsis thaliana GN=SKIP19 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12
Identity = 50/141 (35.46%), Postives = 80/141 (56.74%), Query Frame = 1
Query:   46 AGSLQTLRLPR-SEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVL 465
            + +L++LRL R S+++D    +   +L  +  L+LSYCS     +L  +G+ C  +  L  N HP     +   DD+A AIA TMPKL+ L++  + +S   +  IL +C+ LE LDLR C++V L     K  F ++KV+
Sbjct:  114 SSNLRSLRLIRCSQITDDGFVEAVVKLP-LEELELSYCS-FSVESLRVVGQCCLNMKTLKLNKHP-----QKENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFNVNLVGDLQKRCFESVKVV 247          
BLAST of CF509982 vs. ExPASy Swiss-Prot
Match: FBL23_ARATH (Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana GN=FBL23 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.737e-11
Identity = 54/165 (32.73%), Postives = 84/165 (50.91%), Query Frame = 1
Query:   46 AGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEMNDWDDCSDYSDGSE 537
            + +L++L L R   ++D  VA+   ++  + +L++SYC   G  +L  IG+ C  L  L  N  P         DD A AIA +MP+L+ L++  + ++ + +  IL  C  LE LDLR C+++ L     K  F  +K       D    ND DD SD  DGS+
Sbjct:  276 SSNLKSLGLVRCFPITDEGVAKAVSKVPLLEYLEVSYCLFSGE-SLRDIGRSCPNLKTLKLNRAPEIMFSNSGFDDNAKAIAESMPELRHLQLLGNGLTNKGLNAILDGCPHLEHLDLRQCFNINLVGDLKKRCFERIK-------DLRCPNDSDDDSD--DGSD 430          
BLAST of CF509982 vs. ExPASy Swiss-Prot
Match: SKIP1_ARATH (F-box protein SKIP1 OS=Arabidopsis thaliana GN=SKIP1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 53/165 (32.12%), Postives = 81/165 (49.09%), Query Frame = 1
Query:   10 CADVDLFPGSASAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH----------PLDTADKLSQDD--EANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVL 465
            C+D  L   +    +LQ L +  S  ++D+ + +IA R  ++  LD+SYC +I    L  IG++C  L +L RN+           P +  D   QD   EA+AI   M  L+ LE+ +  +S + +  I   C  LE+LDL GC  V L  + +  N   LK L
Sbjct:   99 CSDHALSYAADRCPNLQVLAIRSSPNVTDASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPNLRILKRNLMDWSSRHIGSVPTEYLDACPQDGDTEADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPKLEYLDLFGC--VHLSSRDITSNVSRLKWL 261          
The following BLAST results are available for this feature:
BLAST of CF509982 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
FBW2_ARATH6.291e-6257.21F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2... [more]
SKI19_ARATH4.571e-1235.46F-box protein SKIP19 OS=Arabidopsis thaliana GN=SK... [more]
FBL23_ARATH1.737e-1132.73Putative F-box/LRR-repeat protein 23 OS=Arabidopsi... [more]
SKIP1_ARATH5.054e-1132.12F-box protein SKIP1 OS=Arabidopsis thaliana GN=SKI... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-496 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509982 ID=CF509982; Name=CF509982; organism=Citrus sinensis; type=EST; length=711bp
GACTTTTTATGTGCTGATGTGGATCTTTTTCCTGGTTCTGCAAGTGCTGG
TTCCCTTCAGACATTGCGACTTCCAAGAAGTGAAATGAGTGACTCCATAG
TGGCTCAGATAGCTGGAAGGTTGTCTGCGGTCACTTTCTTGGATTTGAGC
TATTGCAGTAAAATTGGTGCTCCTGCTTTGGAGGCCATAGGAAAACACTG
TAAATTGCTTGTGGTTCTATGCCGAAACATGCACCCATTAGATACAGCTG
ACAAGCTCTCACAAGATGACGAGGCCAATGCCATTGCCTCAACGATGCCA
AAACTTAAGCGACTTGAGATGGCTTACCATGTTATCAGCACAGAAATTGT
TCTTAAGATCCTTTCGAGCTGTGCCCTGCTAGAGTTTTTGGATTTGAGAG
GGTGCTGGGATGTGAAACTTGACGACAAGTTCATGAAAGGGAACTTCCCA
AATTTGAAGGTTCTGGGGCCCTTTGTGATGGACTACTATGAAATGAATGA
CTGGGATGATTGCTCGGATTATTCAGATGGATCCGAGTATTTGGCCTGGG
AATTCCTAGCTGGTGAAATGGGTGACTATGATGATGATGATGAAATCTAC
GAGGGAATGTGGGATGCTGAAGGCAGGCTGGAAGAGCTTGAGCTAAGGTT
CTATGATGGAATCGAAGAGGATGCAGGTATCTATGGTTGGCCTCCATCAC
CTTAGGCTCTG
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