CF509988

Overview
NameCF509988
Unique NameCF509988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length416
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9247 contig Csv1_Contig9247:22..437. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3PC_MAGLI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Magnolia liliiflora GN=GAPC PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 2.997e-52
Identity = 97/106 (91.51%), Postives = 101/106 (95.28%), Query Frame = 3
Query:   54 GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            G KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFI+TDYMTYMFKYDSVHGQWKH+ELKVKD KTLLFGEKPV VFG RNPEEIPW +TGAE+VVESTGVFT
Sbjct:    2 GGKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDSKTLLFGEKPVTVFGVRNPEEIPWGETGAEFVVESTGVFT 107          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3PC_ARATH (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Arabidopsis thaliana GN=GAPC PE=2 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 6.676e-52
Identity = 94/105 (89.52%), Postives = 101/105 (96.19%), Query Frame = 3
Query:   57 DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            DKKI+IGINGFGRIGRLVARV LQRDDVELVAVNDPFI+T+YMTYMFKYDSVHGQWKHNELK+KDEKTLLFGEKPV VFG RNPE+IPWA+ GA+YVVESTGVFT
Sbjct:    3 DKKIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHNELKIKDEKTLLFGEKPVTVFGIRNPEDIPWAEAGADYVVESTGVFT 107          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3PC_SINAL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Sinapis alba GN=GAPC PE=2 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 9.641e-51
Identity = 93/105 (88.57%), Postives = 100/105 (95.24%), Query Frame = 3
Query:   57 DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            DKKIKIGINGFGRIGRLVARV LQR+DVELVAVNDPFI+T+YMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPV VFG RNPE+IPW + GA++VVESTGVFT
Sbjct:    3 DKKIKIGINGFGRIGRLVARVILQRNDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFT 107          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3PC_RANAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ranunculus acris GN=GAPC PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.644e-50
Identity = 94/103 (91.26%), Postives = 99/103 (96.12%), Query Frame = 3
Query:   63 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            KIKIGINGFGRIGRLVARVAL RDDVELVAVNDPFI+TDYMTYMFKYD+VHGQWKH+ELKVKDEKTLLFGEKPV VFG RNPEEIPW +TGAE+VVESTGVFT
Sbjct:    4 KIKIGINGFGRIGRLVARVALARDDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHHELKVKDEKTLLFGEKPVTVFGCRNPEEIPWGETGAEFVVESTGVFT 106          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3PC_PETHY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 8.161e-50
Identity = 92/103 (89.32%), Postives = 97/103 (94.17%), Query Frame = 3
Query:   63 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIS +YMTYMFKYDSVHGQWKH+ELK KD+KTLLFGEKPV VFG RNPEEIPW + GA+YVVESTGVFT
Sbjct:    3 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISVEYMTYMFKYDSVHGQWKHHELKAKDDKTLLFGEKPVTVFGIRNPEEIPWGEAGADYVVESTGVFT 105          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3PC_ANTMA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Antirrhinum majus GN=GAPC PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.392e-49
Identity = 95/102 (93.14%), Postives = 97/102 (95.10%), Query Frame = 3
Query:   66 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHG WKH+ELKVKDEKTLLFGEKPV VFG RNPEEIP A TGAEY+VESTGVFT
Sbjct:    4 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGAWKHHELKVKDEKTLLFGEKPVVVFGRRNPEEIPRASTGAEYIVESTGVFT 105          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 2.375e-49
Identity = 92/103 (89.32%), Postives = 99/103 (96.12%), Query Frame = 3
Query:   63 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            K+KIGINGFGRIGRLVARVAL RDDVELVAVNDPFI+ DYM YMFKYD+VHGQ+KH+ELKVKDEKTLLFG+KPVAVFG RNPEEIPWA+TGAEYVVESTGVFT
Sbjct:    3 KVKIGINGFGRIGRLVARVALVRDDVELVAVNDPFITVDYMAYMFKYDTVHGQYKHHELKVKDEKTLLFGDKPVAVFGLRNPEEIPWAETGAEYVVESTGVFT 105          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3PE_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 OS=Zea mays GN=GAPC3 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 3.101e-49
Identity = 93/103 (90.29%), Postives = 96/103 (93.20%), Query Frame = 3
Query:   63 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            KIKIGINGFGRIGRLVARVALQ DDVELVAVNDPFISTDYMTYMFKYD+VHGQWKH+E+KVKD KTLLFGEK VAVFG RNPEEIPW   GAEYVVESTGVFT
Sbjct:    3 KIKIGINGFGRIGRLVARVALQSDDVELVAVNDPFISTDYMTYMFKYDTVHGQWKHHEVKVKDSKTLLFGEKEVAVFGCRNPEEIPWGSVGAEYVVESTGVFT 105          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P_ATRNU (Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 4.050e-49
Identity = 90/103 (87.38%), Postives = 97/103 (94.17%), Query Frame = 3
Query:   63 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            K+KIGINGFGRIGRLVARV LQ DD ELVA+NDPFI+TDYMTYMFKYDSVHGQWKH+ELKVKDEKTLLFGE+PV VFG RNPEEIPW +TGA+YVVESTGVFT
Sbjct:    3 KVKIGINGFGRIGRLVARVILQSDDCELVAINDPFITTDYMTYMFKYDSVHGQWKHHELKVKDEKTLLFGERPVTVFGNRNPEEIPWGQTGADYVVESTGVFT 105          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSJ (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. japonica GN=GAPC PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 2.625e-48
Identity = 88/103 (85.44%), Postives = 97/103 (94.17%), Query Frame = 3
Query:   63 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            KIKIGINGFGRIGRLVARVALQ +DVELVAVNDPFI+TDYMTYMFKYD+VHGQWKH+++K+KD KTLL GEKPV VFG RNP+EIPWA+ GAEYVVESTGVFT
Sbjct:    3 KIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFT 105          
The following BLAST results are available for this feature:
BLAST of CF509988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 234
Match NameE-valueIdentityDescription
G3PC_MAGLI2.997e-5291.51Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ARATH6.676e-5289.52Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_SINAL9.641e-5188.57Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_RANAC1.644e-5091.26Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETHY8.161e-5089.32Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ANTMA1.392e-4993.14Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_CRAPL2.375e-4989.32Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PE_MAIZE3.101e-4990.29Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ATRNU4.050e-4987.38Glyceraldehyde-3-phosphate dehydrogenase OS=Atripl... [more]
G3PC_ORYSJ2.625e-4885.44Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-502 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509988 ID=CF509988; Name=CF509988; organism=Citrus sinensis; type=EST; length=416bp
GCAGCGTTAAACAAACCTTCACTACTTTCTCATTTTCGATAATATCAATG
GCCGGAGACAAGAAGATCAAGATCGGAATCAACGGTTTCGGAAGGATCGG
CCGTTTGGTTGCGAGAGTCGCACTCCAGAGGGATGATGTGGAGCTGGTGG
CTGTCAACGATCCTTTCATCTCCACTGATTACATGACATACATGTTTAAG
TACGATAGTGTTCACGGTCAGTGGAAGCACAACGAGTTGAAGGTCAAGGA
CGAGAAGACCCTCCTCTTCGGTGAGAAGCCAGTCGCTGTTTTCGGATTCA
GGAACCCAGAGGAGATCCCATGGGCAAAGACTGGAGCCGAGTATGTTGTG
GAATCAACTGGAGTGTTCACTGACAAGGACAAGGCTGCTGCTCACTTGAA
GGGTGGTGCCAAGAAG
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