CF509990

Overview
NameCF509990
Unique NameCF509990
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF509990_ssr305 microsatellite CF509990_ssr305:305..316. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig889 contig Csv1_Contig889:524..1165. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509990 vs. ExPASy Swiss-Prot
Match: METE_ARATH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Arabidopsis thaliana GN=CIMS PE=1 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 2.730e-103
Identity = 193/213 (90.61%), Postives = 201/213 (94.37%), Query Frame = 2
Query:    2 ANDLAASLSVLRGLEGVVGKDKLVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGFFSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSSFAFTAN 640
            AND AASLS L+ LEG+VGKDKLVVSTSCSLLHTAVDL+NE KLDDEIKSWLAFAAQKVVEVNALAKALAGQKDE  FSANAAA ASR+SSPRVTNE VQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQT+ELRRVRREYKAKK+SEE+YV +IKEEI KVV LQEELDIDVLVHGEPERNDMVEYFGEQLS FAFTAN
Sbjct:  300 ANDFAASLSTLQALEGIVGKDKLVVSTSCSLLHTAVDLINETKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEALFSANAAALASRRSSPRVTNEGVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTVELRRVRREYKAKKVSEEDYVKAIKEEIKKVVDLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTAN 512          
BLAST of CF509990 vs. ExPASy Swiss-Prot
Match: METE_CATRO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1)

HSP 1 Score: 372.859 bits (956), Expect = 7.944e-103
Identity = 192/213 (90.14%), Postives = 203/213 (95.31%), Query Frame = 2
Query:    2 ANDLAASLSVLRGLEGVVGKDKLVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGFFSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSSFAFTAN 640
            ANDLAASLS L+ LEG+VGKDKLVVSTSCSLLHTAVDLVNE KLD EIKSWLAFAAQKVVEVNALAKALAG+KDE FFS NAAAQASRKSSPRVTN+ VQKAAAAL+GSDHRRAT VSARLDAQQKKLNLP+LPTTTIGSFPQT+ELRRVRREYKAKKISE++YV +IKEEI+KVVKLQEELDIDVLVHGEPERNDMVEYFGEQLS FAFTAN
Sbjct:  300 ANDLAASLSTLQSLEGIVGKDKLVVSTSCSLLHTAVDLVNEPKLDKEIKSWLAFAAQKVVEVNALAKALAGEKDEAFFSENAAAQASRKSSPRVTNQAVQKAAAALRGSDHRRATTVSARLDAQQKKLNLPVLPTTTIGSFPQTLELRRVRREYKAKKISEDDYVKAIKEEISKVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTAN 512          
BLAST of CF509990 vs. ExPASy Swiss-Prot
Match: METE_MESCR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mesembryanthemum crystallinum GN=METE PE=2 SV=1)

HSP 1 Score: 372.474 bits (955), Expect = 1.037e-102
Identity = 192/213 (90.14%), Postives = 201/213 (94.37%), Query Frame = 2
Query:    2 ANDLAASLSVLRGLEGVVGKDKLVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGFFSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSSFAFTAN 640
            ANDLAASL+ L  LEGVVGKDKLVVSTSCS LHTAVDL+NE KLDDEIKSWLAFAAQKV+EVNALAKAL+GQKDE FFSANAAA ASRKSSPRVTNE VQKAA ALKGSDHRRAT VS+RLDAQQKKLNLPILPTTTIGSFPQT+ELRRVRREYKAKKISEEEYV +IKEEI+KVVKLQEELDIDVLVHGEPERNDMVEYFGEQLS FAF+AN
Sbjct:  300 ANDLAASLATLEALEGVVGKDKLVVSTSCSFLHTAVDLINETKLDDEIKSWLAFAAQKVLEVNALAKALSGQKDEAFFSANAAALASRKSSPRVTNEAVQKAATALKGSDHRRATTVSSRLDAQQKKLNLPILPTTTIGSFPQTVELRRVRREYKAKKISEEEYVKAIKEEISKVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFSAN 512          
BLAST of CF509990 vs. ExPASy Swiss-Prot
Match: METE_SOLSC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Solenostemon scutellarioides GN=MET PE=1 SV=2)

HSP 1 Score: 360.147 bits (923), Expect = 5.328e-99
Identity = 185/213 (86.85%), Postives = 197/213 (92.49%), Query Frame = 2
Query:    2 ANDLAASLSVLRGLEGVVGKDKLVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGFFSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSSFAFTAN 640
            ANDLA+S++ L+ LEG+VGKDKLVVSTS SLLHTAVDLVNE KLD EIKSWLAFAAQK+VEVNALAKAL G KDE FFS NAAAQASRKSSPRV NE VQKAAAAL+GS+HRR TNVSARLDAQQKKLNLPILPTTTIGSFPQT+ELRRVRRE+K  +ISEEEYV +IKEEINKVVKLQEELDIDVLVHGEPERNDMVEYFGEQLS FAFTAN
Sbjct:  299 ANDLASSITTLQALEGIVGKDKLVVSTSSSLLHTAVDLVNEPKLDQEIKSWLAFAAQKIVEVNALAKALTGHKDEAFFSPNAAAQASRKSSPRVNNEAVQKAAAALRGSEHRRVTNVSARLDAQQKKLNLPILPTTTIGSFPQTVELRRVRREFKPTRISEEEYVKAIKEEINKVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTAN 511          
BLAST of CF509990 vs. ExPASy Swiss-Prot
Match: METE_BURA4 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia ambifaria (strain MC40-6) GN=metE PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 8.626e-49
Identity = 107/211 (50.71%), Postives = 142/211 (67.30%), Query Frame = 2
Query:    8 DLAASLSVLRGLEGVVGKDKLVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDE--GFFSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSSFAFT 634
            DL A+L  L  L   +G ++L ++ SCSLLH  VDL +E KLD EI+SWLAFA QK+ E+N LA AL   +D+     +ANAAA  SR+ SPRV N  V+ A A +      RA+  + R   Q  +LNLP  PTTTIGSFPQT ++R+ RR++K+  + E  Y A+++ EI + V+ QE L++DVLVHGE ERNDMVEYFGEQL  +AF+
Sbjct:  304 DLNATLDWLEPLAKQLG-ERLWIAPSCSLLHVPVDLASEQKLDPEIRSWLAFALQKLDELNVLATALNEGRDKVADALAANAAAIDSRRRSPRVNNPAVKAALARIDAQLGNRASPYTQRAPKQSARLNLPAFPTTTIGSFPQTADIRQARRQFKSGALDEAGYRAAMQAEIERSVREQESLELDVLVHGEAERNDMVEYFGEQLDGYAFS 513          
BLAST of CF509990 vs. ExPASy Swiss-Prot
Match: METE_RALSO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Ralstonia solanacearum GN=metE PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.510e-48
Identity = 106/213 (49.77%), Postives = 142/213 (66.67%), Query Frame = 2
Query:    8 DLAASLSVLRGLEGVVGKDKLVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGF--FSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSSFAFTAN 640
            DL  +L+ +  L   +G ++L ++ SCSLLH  VDL  E +LDDE+K WLAFA QK+ E+  L +A+   +D      + +AAA ASR +S RV N+ V+K AAA++  D  RA     R  AQQ +LNLP+LPTTTIGSFPQT E+R+ R +YK  ++    Y+  ++ EI  VV+ QE L +D+LVHGE ERNDMVEYFGE L  +AFTAN
Sbjct:  296 DLEQALARVAPLAQTLG-ERLWLAPSCSLLHVPVDLAAETRLDDELKGWLAFARQKLDELAVLKRAVIDGRDAAHAALAGSAAAIASRAASRRVHNDSVKKRAAAIRAQDAERAAPYPVRAAAQQARLNLPLLPTTTIGSFPQTAEIRQARAQYKRGELQALTYLERMRAEIADVVQRQEALGLDMLVHGEAERNDMVEYFGELLWGYAFTAN 507          
BLAST of CF509990 vs. ExPASy Swiss-Prot
Match: METE_BORA1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bordetella avium (strain 197N) GN=metE PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.591e-48
Identity = 105/208 (50.48%), Postives = 143/208 (68.75%), Query Frame = 2
Query:   32 LRGLEGVVGK--DKLVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGF---FSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSSFAFTAN 640
            LR LE V  +  D+L ++ SCSLLH  VDL+ E +LD E+KSWL+FA+QK+ E++ L +AL G   +      +A  AA A+R+SSPR+ N  V +  AA +     RA   + R+  QQ +LNLP  PTTTIGSFPQT E+R +RR++K+  +S+  Y A I++EI  V++ QE++ +DVLVHGEPERNDMVEYFGE L+ FAFT N
Sbjct:  311 LRKLEPVARQLGDRLWLAPSCSLLHVPVDLLAETELDAELKSWLSFASQKLDELSLLGRALDGDSSQAVQEGLAAQRAALAARRSSPRIHNPAVGRRMAASEQVSRDRAP-FAERIRQQQARLNLPPFPTTTIGSFPQTAEIRGLRRDWKSGALSDSTYEALIRKEIEAVIRFQEKVGLDVLVHGEPERNDMVEYFGELLAGFAFTKN 517          
BLAST of CF509990 vs. ExPASy Swiss-Prot
Match: METE_RALPJ (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Ralstonia pickettii (strain 12J) GN=metE PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.302e-48
Identity = 109/213 (51.17%), Postives = 138/213 (64.79%), Query Frame = 2
Query:    8 DLAASLSVLRGLEGVVGKDKLVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKD--EGFFSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSSFAFTAN 640
            DL   L+ L  L   +G D+L ++ SCSLLH  VDL  E KLDDE+K WLAFA QK+ E+  + +AL       +G    N  A ASR  S RV N  V+K  AA++ +D  RA    AR DAQQ +LNLP+LPTTTIGSFPQT E+RR R ++K   +   +Y+  ++ EI  VV+ QE L +D+LVHGE ERNDMVEYFGE L  +AFTAN
Sbjct:  299 DLTRVLAHLTPLAQALG-DRLWIAPSCSLLHVPVDLSAETKLDDELKGWLAFARQKLDELAVIKRALVEGPAAVQGELDDNRIAIASRTQSRRVHNAGVKKRVAAIRAADAVRAAPYPARADAQQARLNLPLLPTTTIGSFPQTPEIRRARAQHKRGDLPALDYLQRMRTEIADVVRRQEALGLDMLVHGEAERNDMVEYFGELLWGYAFTAN 510          
BLAST of CF509990 vs. ExPASy Swiss-Prot
Match: METE_CANAL (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Candida albicans GN=MET6 PE=1 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 9.537e-48
Identity = 103/211 (48.82%), Postives = 137/211 (64.93%), Query Frame = 2
Query:    8 DLAASLSVLRGLEGVVGKDKLVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGFFSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSSFAFTAN 640
            D A + +V++     VGKDK+VV+TS SLLHT VDL +E KLD  IK W +FA QK+ EV  +AK ++G+       ANAA+  +R  S    + +VQ+    +  +   R      RL  Q+ K NLP+ PTTTIGSFPQT ++R  R ++   +I+ EEY A I +EI  VV+ QEE+ +DVLVHGEPERNDMV+YFGEQL+ FAFT N
Sbjct:  311 DFAKASAVVQKAIEKVGKDKVVVATSSSLLHTPVDLESETKLDAVIKDWFSFATQKLDEVVVIAKNVSGEDVSKQLEANAASIKARSESSITNDPKVQERLTTINEALATRKAAFPERLTEQKAKYNLPLFPTTTIGSFPQTKDIRINRNKFAKGQITAEEYEAFINKEIETVVRFQEEIGLDVLVHGEPERNDMVQYFGEQLNGFAFTTN 521          
BLAST of CF509990 vs. ExPASy Swiss-Prot
Match: METE_BURCJ (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=metE PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 9.537e-48
Identity = 108/211 (51.18%), Postives = 137/211 (64.93%), Query Frame = 2
Query:    8 DLAASLSVLRGLEGVVGKDKLVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDE--GFFSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSSFAFT 634
            DL A+L  L  L   +G D+L ++ SCSLLH  VDL NE KLD EI+SWLAFA QK+ E+  LA AL   +D      +ANAAA  SR+ SPRV N  V+ A A +      RA+  + R   Q  +LNLP  PTTTIGSFPQT E+R+ R  +KA  + E  Y  +++ EI + V+ QE L++DVLVHGE ERNDMVEYFGEQL  +AF+
Sbjct:  304 DLNATLDWLEPLAKQLG-DRLWLAPSCSLLHVPVDLANEAKLDAEIRSWLAFALQKLDELKVLATALNEGRDTVADALAANAAAIESRRRSPRVNNPAVKAAIARIDARLGNRASPYAQRASKQSARLNLPAFPTTTIGSFPQTAEIRQARSRFKAGTLDEAGYRTAMQAEIERSVREQESLELDVLVHGEAERNDMVEYFGEQLDGYAFS 513          
The following BLAST results are available for this feature:
BLAST of CF509990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 269
Match NameE-valueIdentityDescription
METE_ARATH2.730e-10390.615-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CATRO7.944e-10390.145-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MESCR1.037e-10290.145-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SOLSC5.328e-9986.855-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURA48.626e-4950.715-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RALSO2.510e-4849.775-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BORA15.591e-4850.485-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RALPJ7.302e-4851.175-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CANAL9.537e-4848.825-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURCJ9.537e-4851.185-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-504 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509990 ID=CF509990; Name=CF509990; organism=Citrus sinensis; type=EST; length=642bp
GGCCAATGATCTTGCTGCTTCTCTTAGTGTTCTCCGGGGGCTTGAGGGTG
TTGTTGGCAAAGACAAGCTTGTGGTCTCCACCTCCTGCTCACTTCTTCAC
ACTGCTGTTGATCTTGTTAATGAGAACAAACTCGACGATGAAATCAAGTC
ATGGCTGGCATTTGCTGCCCAGAAAGTTGTTGAAGTGAATGCATTGGCCA
AGGCTTTGGCTGGCCAAAAGGATGAGGGATTCTTCTCTGCCAATGCTGCA
GCTCAGGCTTCAAGAAAGTCCTCCCCGAGAGTGACCAATGAGAGAGTTCA
AAAGGCTGCTGCTGCTTTGAAGGGATCAGACCACAGACGTGCTACAAACG
TTAGTGCTAGATTGGATGCTCAACAGAAGAAGCTCAATCTTCCAATCCTC
CCAACCACCACAATTGGATCCTTCCCACAAACCATTGAACTTAGGAGAGT
CCGCCGTGAATACAAGGCTAAGAAGATTTCTGAGGAAGAATATGTTGCTT
CCATCAAGGAGGAAATCAACAAGGTTGTCAAACTCCAAGAAGAGCTTGAT
ATTGATGTCCTTGTCCATGGAGAGCCTGAGAGGAACGACATGGTTGAGTA
CTTTGGAGAGCAATTATCAAGTTTCGCCTTCACTGCCAATGG
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