CF509992

Overview
NameCF509992
Unique NameCF509992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length432
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6239 contig Csv1_Contig6239:159..590. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF509992 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 9.335e-47
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 1 
Query:  163 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSI 423
            MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKL+LQF+EDYPNKPPTVRFVSRMFHPNIYADGSI
Sbjct:    1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSI 87
[Close]
BLAST of CF509992 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 9.335e-47
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 1 
Query:  163 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSI 423
            MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKL+LQF+EDYPNKPPTVRFVSRMFHPNIYADGSI
Sbjct:    1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSI 87
[Close]
BLAST of CF509992 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 2.080e-46
Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 1 
Query:  163 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSI 423
            MSTPARKRLMRDFKRLQQDPPAGISGAP DNNI LWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSI
Sbjct:    1 MSTPARKRLMRDFKRLQQDPPAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSI 87
[Close]
BLAST of CF509992 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 3.547e-46
Identity = 84/87 (96.55%), Postives = 86/87 (98.85%), Query Frame = 1 
Query:  163 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSI 423
            MSTPARKRLMRDFKRLQ DPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKL+LQF+EDYPNKPPTVRFVSRMFHPNIYADGSI
Sbjct:    1 MSTPARKRLMRDFKRLQHDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSI 87
[Close]
BLAST of CF509992 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 3.108e-42
Identity = 77/87 (88.51%), Postives = 82/87 (94.25%), Query Frame = 1 
Query:  163 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSI 423
            M+TPA+KRLM DFKRLQ+DPP GISGAPQDNNIM WNA+IFGP+DTPWDGGTFKLTL FTEDYPNKPP VRFVSRMFHPNIYADGSI
Sbjct:    1 MTTPAKKRLMWDFKRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPNIYADGSI 87
[Close]
BLAST of CF509992 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.909e-40
Identity = 71/87 (81.61%), Postives = 84/87 (96.55%), Query Frame = 1 
Query:  163 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSI 423
            MSTPAR+RLMRDFKRLQ+DPPAG+SGAP +NNIM+WNAVIFGP+ TP++ GTFKLT++FTE+YPNKPPTVRFVS+MFHPN+YADGSI
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSI 87
[Close]
BLAST of CF509992 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 2.909e-40
Identity = 71/87 (81.61%), Postives = 84/87 (96.55%), Query Frame = 1 
Query:  163 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSI 423
            MSTPAR+RLMRDFKRLQ+DPPAG+SGAP +NNIM+WNAVIFGP+ TP++ GTFKLT++FTE+YPNKPPTVRFVS+MFHPN+YADGSI
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSI 87
[Close]
BLAST of CF509992 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 8.463e-40
Identity = 70/87 (80.46%), Postives = 82/87 (94.25%), Query Frame = 1 
Query:  163 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSI 423
            MSTPAR+RLMRDFKRLQ+DPP G+SGAP DNNIM+WNAVIFGP DTP++ GTFKLT++FTE+YPNKPPTVRFVS++FHPN+YADG I
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGI 87
[Close]
BLAST of CF509992 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.644e-38
Identity = 67/87 (77.01%), Postives = 81/87 (93.10%), Query Frame = 1 
Query:  163 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSI 423
            MSTPAR+RLMRDFKRLQ+DPP G+SGAP +NNIM WNAVIFGP+ TP++ GTFKL ++F+E+YPNKPPTVRF+S+MFHPN+YADGSI
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSI 87
[Close]
BLAST of CF509992 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.644e-38
Identity = 67/87 (77.01%), Postives = 81/87 (93.10%), Query Frame = 1 
Query:  163 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSI 423
            MSTPAR+RLMRDFKRLQ+DPP G+SGAP +NNIM WNAVIFGP+ TP++ GTFKL ++F+E+YPNKPPTVRF+S+MFHPN+YADGSI
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSI 87
The following BLAST results are available for this feature:
BLAST of CF509992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
UBC2_ARATH9.335e-4797.70Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBC1_ARATH9.335e-4797.70Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBC2_WHEAT2.080e-4697.70Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBC2_MEDSA3.547e-4696.55Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC3_ARATH3.108e-4288.51Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UBE2A_MOUSE2.909e-4081.61Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN2.909e-4081.61Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBCD6_DROME8.463e-4080.46Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBE2B_RAT4.644e-3877.01Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]
UBE2B_RABIT4.644e-3877.01Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-506 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509992 ID=CF509992; Name=CF509992; organism=Citrus sinensis; type=EST; length=432bp
TTCTCCACTCGTACTCTCCGTTTTAATCCACTTAGTCTTTTTCTTCTTTT
CTTTCGTTGTATAAATTCAATCAATTCCAACGCTGAAACTTGAAGCCGCT
TAGCTTTCCCTCTTGTTTACCAGTTTCTCGTACCGTCTCCTTTCAGTTTG
TAGGTGGTGACGATGTCGACACCTGCAAGGAAGAGGCTGATGAGAGATTT
TAAAAGGTTGCAGCAAGACCCGCCTGCAGGCATCAGTGGGGCTCCCCAAG
ACAACAATATTATGCTCTGGAATGCCGTGATATTTGGTCCTGATGATACT
CCATGGGATGGAGGTACGTTCAAGTTGACCCTTCAGTTTACGGAGGATTA
TCCAAACAAACCGCCAACTGTACGATTTGTTTCTAGGATGTTTCATCCAA
ATATATATGCCGATGGAAGTATTTTGTCTGGA
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