CF509994
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF509994 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 2.853e-30 Identity = 70/145 (48.28%), Postives = 94/145 (64.83%), Query Frame = 3 Query: 120 TIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD--QPFRLNWATFSTGDKRSDNGPDLSIFVGDLAADVTDSLLHETFASRYPSVKAAKVVFDANTGRSKGYGFVRF 545 ++W+GDL +MDEN++ FA+ GE + S+K+IRN+ TG+ GY FVEF ATAEK L +P + F+LN+AT+ K+ DN P+ S+FVGDL DV D +L+E F YPS + KVV D TG SKGYGFV+F Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKF 144
BLAST of CF509994 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 2.853e-30 Identity = 70/145 (48.28%), Postives = 94/145 (64.83%), Query Frame = 3 Query: 120 TIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD--QPFRLNWATFSTGDKRSDNGPDLSIFVGDLAADVTDSLLHETFASRYPSVKAAKVVFDANTGRSKGYGFVRF 545 ++W+GDL +MDEN++ FA+ GE + S+K+IRN+ TG+ GY FVEF ATAEK L +P + F+LN+AT+ K+ DN P+ S+FVGDL DV D +L+E F YPS + KVV D TG SKGYGFV+F Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKF 144
BLAST of CF509994 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 2.853e-30 Identity = 70/145 (48.28%), Postives = 94/145 (64.83%), Query Frame = 3 Query: 120 TIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD--QPFRLNWATFSTGDKRSDNGPDLSIFVGDLAADVTDSLLHETFASRYPSVKAAKVVFDANTGRSKGYGFVRF 545 ++W+GDL +MDEN++ FA+ GE + S+K+IRN+ TG+ GY FVEF ATAEK L +P + F+LN+AT+ K+ DN P+ S+FVGDL DV D +L+E F YPS + KVV D TG SKGYGFV+F Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKF 144
BLAST of CF509994 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2) HSP 1 Score: 130.954 bits (328), Expect = 3.727e-30 Identity = 70/145 (48.28%), Postives = 94/145 (64.83%), Query Frame = 3 Query: 120 TIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD--QPFRLNWATFSTGDKRSDNGPDLSIFVGDLAADVTDSLLHETFASRYPSVKAAKVVFDANTGRSKGYGFVRF 545 ++W+GDL +MDEN++ FA+ GE + S+K+IRN+ TG+ GY FVEF ATAEK L +P + F+LN+AT+ K+ DN P+ S+FVGDL DV D +L+E F YPS + KVV D TG SKGYGFV+F Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDP-TGVSKGYGFVKF 144
BLAST of CF509994 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 8.302e-30 Identity = 69/145 (47.59%), Postives = 93/145 (64.14%), Query Frame = 3 Query: 120 TIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD--QPFRLNWATFSTGDKRSDNGPDLSIFVGDLAADVTDSLLHETFASRYPSVKAAKVVFDANTGRSKGYGFVRF 545 ++W+GDL +MDEN++ FA+ GE + S+K+IRN+ TG+ GY FVEF ATAEK L +P + F+LN+ T+ K+ DN P+ S+FVGDL DV D +L+E F YPS + KVV D TG SKGYGFV+F Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKF 144
BLAST of CF509994 vs. ExPASy Swiss-Prot
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 2.953e-27 Identity = 63/145 (43.45%), Postives = 95/145 (65.52%), Query Frame = 3 Query: 120 TIWVGDLHHWMDENYLHSCFASTGEIA-SIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQP--FRLNWATFSTGDKRSDNGPDLSIFVGDLAADVTDSLLHETFASRYPSVKAAKVVFDANTGRSKGYGFVRF 545 ++W+GDL +MDEN++ F++ GE A +K+I ++ TG S GY FVE A+ ++ +Q L+P ++ P F+LN+AT+ KR + GP+ S+FVGDL ++V D LH+ F ++PS K AKVV D G S+GYGFV+F Sbjct: 7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATYG---KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTDP-YGNSRGYGFVKF 147
BLAST of CF509994 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 2.116e-25 Identity = 64/156 (41.03%), Postives = 89/156 (57.05%), Query Frame = 3 Query: 96 GSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSE--GYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWATFSTGDKRSDN----GPDLSIFVGDLAADVTDSLLHETFASRYPSVKAAKVVFDANTGRSKGYGFVRF 545 G G + T+W+GDL WMD ++ +AS E ++KV+R+K + Y FV+F + A AE+ L Y + ++P F+LNWAT G + +N P+ SIFVGDL DS L TF S YPS +AK++ D TG S+ YGFVRF Sbjct: 78 GVGSKMSDTLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWAT--GGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRF 231
BLAST of CF509994 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2) HSP 1 Score: 110.153 bits (274), Expect = 6.807e-24 Identity = 60/155 (38.71%), Postives = 92/155 (59.35%), Query Frame = 3 Query: 96 GSGGGEN----KTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWATFS-TGDKRSDNGPDLSIFVGDLAADVTDSLLHETFASRYPSVKAAKVVFDANTGRSKGYGFVRF 545 GS EN T+W+G+L W+ E ++ + + G+ +K+IRN+ TG++ GY FVEF + A + S + +P T+ F+LNWA+ +K + SIFVGDL+ +V + ++ FASRY S K+AK++ D T S+GYGFVRF Sbjct: 82 GSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRF 235
BLAST of CF509994 vs. ExPASy Swiss-Prot
Match: TSAP1_DANRE (tRNA selenocysteine 1-associated protein 1 OS=Danio rerio GN=trnau1ap PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 5.582e-18 Identity = 52/143 (36.36%), Postives = 77/143 (53.85%), Query Frame = 3 Query: 120 TIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWATFSTGDKRSDNGPDLSIFVGDLAADVTDSLLHETFASRYPSVKAAKVVFDANTGRSKGYGFVRF 545 ++W+G+L +MDE+++ FA GE + I++IR+K TG + GYGFVE E+ L+ +P P R + + G + S+FV DL DV D +L+E F + S + K+V DAN G SK GFV F Sbjct: 3 SLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLSRSNYG--KQGESSTFSLFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLDAN-GHSKCCGFVSF 142
BLAST of CF509994 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 3.618e-17 Identity = 59/164 (35.98%), Postives = 88/164 (53.66%), Query Frame = 3 Query: 105 GGENKTIWVGDLHHWMDENYLHSCFASTGEI-ASIKVIRNKQTGL----------SEGYGFVEFFTHATAEKVLQSYTSILMPN-TDQPFRLNWATFSTGDKRSD-----NGPDLSIFVGDLAADVTDSLLHETFASRYPSVKAAKVVFDANTGRSKGYGFVRF 545 G +++GDL D+N + +AS GE +++++ N ++GY FV+F + A L +L+PN ++ +LNWAT S + + +G + SIFVGDLA +VT+S L E F +RY S AK+V D TG SKGYGFV+F Sbjct: 50 GTTGNQLYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKF 212 The following BLAST results are available for this feature:
BLAST of CF509994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >CF509994 ID=CF509994; Name=CF509994; organism=Citrus sinensis; type=EST; length=545bpback to top |