CF509994

Overview
NameCF509994
Unique NameCF509994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF509994_ssr78 microsatellite CF509994_ssr78:78..89. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF509994 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.853e-30
Identity = 70/145 (48.28%), Postives = 94/145 (64.83%), Query Frame = 3
Query:  120 TIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD--QPFRLNWATFSTGDKRSDNGPDLSIFVGDLAADVTDSLLHETFASRYPSVKAAKVVFDANTGRSKGYGFVRF 545
            ++W+GDL  +MDEN++   FA+ GE + S+K+IRN+ TG+  GY FVEF   ATAEK L       +P     + F+LN+AT+    K+ DN P+ S+FVGDL  DV D +L+E F   YPS +  KVV D  TG SKGYGFV+F
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKF 144          
BLAST of CF509994 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.853e-30
Identity = 70/145 (48.28%), Postives = 94/145 (64.83%), Query Frame = 3
Query:  120 TIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD--QPFRLNWATFSTGDKRSDNGPDLSIFVGDLAADVTDSLLHETFASRYPSVKAAKVVFDANTGRSKGYGFVRF 545
            ++W+GDL  +MDEN++   FA+ GE + S+K+IRN+ TG+  GY FVEF   ATAEK L       +P     + F+LN+AT+    K+ DN P+ S+FVGDL  DV D +L+E F   YPS +  KVV D  TG SKGYGFV+F
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKF 144          
BLAST of CF509994 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.853e-30
Identity = 70/145 (48.28%), Postives = 94/145 (64.83%), Query Frame = 3
Query:  120 TIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD--QPFRLNWATFSTGDKRSDNGPDLSIFVGDLAADVTDSLLHETFASRYPSVKAAKVVFDANTGRSKGYGFVRF 545
            ++W+GDL  +MDEN++   FA+ GE + S+K+IRN+ TG+  GY FVEF   ATAEK L       +P     + F+LN+AT+    K+ DN P+ S+FVGDL  DV D +L+E F   YPS +  KVV D  TG SKGYGFV+F
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKF 144          
BLAST of CF509994 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 3.727e-30
Identity = 70/145 (48.28%), Postives = 94/145 (64.83%), Query Frame = 3
Query:  120 TIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD--QPFRLNWATFSTGDKRSDNGPDLSIFVGDLAADVTDSLLHETFASRYPSVKAAKVVFDANTGRSKGYGFVRF 545
            ++W+GDL  +MDEN++   FA+ GE + S+K+IRN+ TG+  GY FVEF   ATAEK L       +P     + F+LN+AT+    K+ DN P+ S+FVGDL  DV D +L+E F   YPS +  KVV D  TG SKGYGFV+F
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDP-TGVSKGYGFVKF 144          
BLAST of CF509994 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 8.302e-30
Identity = 69/145 (47.59%), Postives = 93/145 (64.14%), Query Frame = 3
Query:  120 TIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD--QPFRLNWATFSTGDKRSDNGPDLSIFVGDLAADVTDSLLHETFASRYPSVKAAKVVFDANTGRSKGYGFVRF 545
            ++W+GDL  +MDEN++   FA+ GE + S+K+IRN+ TG+  GY FVEF   ATAEK L       +P     + F+LN+ T+    K+ DN P+ S+FVGDL  DV D +L+E F   YPS +  KVV D  TG SKGYGFV+F
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKF 144          
BLAST of CF509994 vs. ExPASy Swiss-Prot
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.953e-27
Identity = 63/145 (43.45%), Postives = 95/145 (65.52%), Query Frame = 3
Query:  120 TIWVGDLHHWMDENYLHSCFASTGEIA-SIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQP--FRLNWATFSTGDKRSDNGPDLSIFVGDLAADVTDSLLHETFASRYPSVKAAKVVFDANTGRSKGYGFVRF 545
            ++W+GDL  +MDEN++   F++ GE A  +K+I ++ TG S GY FVE    A+ ++ +Q     L+P ++ P  F+LN+AT+    KR + GP+ S+FVGDL ++V D  LH+ F  ++PS K AKVV D   G S+GYGFV+F
Sbjct:    7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATYG---KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTDP-YGNSRGYGFVKF 147          
BLAST of CF509994 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.116e-25
Identity = 64/156 (41.03%), Postives = 89/156 (57.05%), Query Frame = 3
Query:   96 GSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSE--GYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWATFSTGDKRSDN----GPDLSIFVGDLAADVTDSLLHETFASRYPSVKAAKVVFDANTGRSKGYGFVRF 545
            G G   + T+W+GDL  WMD  ++   +AS  E  ++KV+R+K +       Y FV+F + A AE+ L  Y + ++P     F+LNWAT   G  + +N     P+ SIFVGDL     DS L  TF S YPS  +AK++ D  TG S+ YGFVRF
Sbjct:   78 GVGSKMSDTLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWAT--GGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRF 231          
BLAST of CF509994 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 6.807e-24
Identity = 60/155 (38.71%), Postives = 92/155 (59.35%), Query Frame = 3
Query:   96 GSGGGEN----KTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWATFS-TGDKRSDNGPDLSIFVGDLAADVTDSLLHETFASRYPSVKAAKVVFDANTGRSKGYGFVRF 545
            GS   EN     T+W+G+L  W+ E ++   + + G+   +K+IRN+ TG++ GY FVEF +   A   + S  +  +P T+  F+LNWA+     +K      + SIFVGDL+ +V +  ++  FASRY S K+AK++ D  T  S+GYGFVRF
Sbjct:   82 GSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRF 235          
BLAST of CF509994 vs. ExPASy Swiss-Prot
Match: TSAP1_DANRE (tRNA selenocysteine 1-associated protein 1 OS=Danio rerio GN=trnau1ap PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.582e-18
Identity = 52/143 (36.36%), Postives = 77/143 (53.85%), Query Frame = 3
Query:  120 TIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWATFSTGDKRSDNGPDLSIFVGDLAADVTDSLLHETFASRYPSVKAAKVVFDANTGRSKGYGFVRF 545
            ++W+G+L  +MDE+++   FA  GE +  I++IR+K TG + GYGFVE       E+ L+      +P    P R   +  + G  +       S+FV DL  DV D +L+E F   + S  + K+V DAN G SK  GFV F
Sbjct:    3 SLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLSRSNYG--KQGESSTFSLFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLDAN-GHSKCCGFVSF 142          
BLAST of CF509994 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 3.618e-17
Identity = 59/164 (35.98%), Postives = 88/164 (53.66%), Query Frame = 3
Query:  105 GGENKTIWVGDLHHWMDENYLHSCFASTGEI-ASIKVIRNKQTGL----------SEGYGFVEFFTHATAEKVLQSYTSILMPN-TDQPFRLNWATFSTGDKRSD-----NGPDLSIFVGDLAADVTDSLLHETFASRYPSVKAAKVVFDANTGRSKGYGFVRF 545
            G     +++GDL    D+N +   +AS GE   +++++ N               ++GY FV+F +   A   L     +L+PN  ++  +LNWAT S  +  +      +G + SIFVGDLA +VT+S L E F +RY S   AK+V D  TG SKGYGFV+F
Sbjct:   50 GTTGNQLYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKF 212          
The following BLAST results are available for this feature:
BLAST of CF509994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
TSAP1_RAT2.853e-3048.28tRNA selenocysteine 1-associated protein 1 OS=Ratt... [more]
TSAP1_HUMAN2.853e-3048.28tRNA selenocysteine 1-associated protein 1 OS=Homo... [more]
TSAP1_BOVIN2.853e-3048.28tRNA selenocysteine 1-associated protein 1 OS=Bos ... [more]
TSAP1_MOUSE3.727e-3048.28tRNA selenocysteine 1-associated protein 1 OS=Mus ... [more]
TSAP1_PONAB8.302e-3047.59tRNA selenocysteine 1-associated protein 1 OS=Pong... [more]
TSP1L_DANRE2.953e-2743.45tRNA selenocysteine 1-associated protein 1-like OS... [more]
CSX1_SCHPO2.116e-2541.03RNA-binding post-transcriptional regulator csx1 OS... [more]
YG41_SCHPO6.807e-2438.71Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
TSAP1_DANRE5.582e-1836.36tRNA selenocysteine 1-associated protein 1 OS=Dani... [more]
NAM8_YEAST3.618e-1735.98Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-508 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509994 ID=CF509994; Name=CF509994; organism=Citrus sinensis; type=EST; length=545bp
ATTATCCGATACCGCCACCTCCCTATATGCCGTATCACCAATACCAGCAT
CACCACCAGCCGCATCTACAGCACCAACAGCAGCAGCAGCATCAAGGATC
TGGCGGTGGTGAGAATAAGACTATCTGGGTCGGTGATTTGCATCATTGGA
TGGACGAGAACTACCTTCATAGCTGTTTTGCTTCCACTGGAGAGATTGCC
TCCATTAAGGTTATTCGCAATAAGCAGACAGGATTGTCAGAAGGTTATGG
ATTTGTGGAATTTTTTACCCATGCAACAGCTGAGAAAGTTCTGCAGAGCT
ATACTAGCATTCTGATGCCCAACACAGATCAGCCTTTCCGCCTGAACTGG
GCAACATTTAGTACGGGTGACAAGCGCTCAGATAATGGTCCTGATCTTTC
TATTTTTGTAGGAGATTTAGCTGCCGATGTTACTGATAGCTTATTGCATG
AAACTTTTGCTAGTAGATATCCTTCTGTTAAAGCAGCAAAAGTTGTCTTT
GATGCCAATACTGGTCGATCAAAAGGTTATGGTTTTGTAAGGTTT
back to top