CF509996

Overview
NameCF509996
Unique NameCF509996
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7368 contig Csv1_Contig7368:677..1224. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF509996 vs. ExPASy Swiss-Prot
Match: FLA15_ARATH (Fasciclin-like arabinogalactan protein 15 OS=Arabidopsis thaliana GN=FLA15 PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 3.610e-73
Identity = 132/141 (93.62%), Postives = 136/141 (96.45%), Query Frame = 3 
Query:  126 HFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHIIPEYQTEESMYNSVRRFGKVKYDTLRLPHKVTAQEADGSVKFGTSDGSAYLFDPDIYTDGR 548
            HFNGE QVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQI+YYHIIPEYQTEESMYNSVRRFGK++YD+LR PHKV AQEADGSVKFG  DGSAYLFDPDIYTDGR
Sbjct:  242 HFNGEAQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNSVRRFGKIRYDSLRFPHKVEAQEADGSVKFGHGDGSAYLFDPDIYTDGR 382
[Close]
BLAST of CF509996 vs. ExPASy Swiss-Prot
Match: FLA16_ARATH (Fasciclin-like arabinogalactan protein 16 OS=Arabidopsis thaliana GN=FLA16 PE=2 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 6.157e-73
Identity = 132/141 (93.62%), Postives = 136/141 (96.45%), Query Frame = 3 
Query:  126 HFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHIIPEYQTEESMYNSVRRFGKVKYDTLRLPHKVTAQEADGSVKFGTSDGSAYLFDPDIYTDGR 548
            HFNG+ QVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQI+YYHIIPEYQTEESMYN+VRRFGKVKYD+LR PHKV AQEADGSVKFG  DGSAYLFDPDIYTDGR
Sbjct:  250 HFNGDAQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKVKYDSLRFPHKVLAQEADGSVKFGHGDGSAYLFDPDIYTDGR 390
[Close]
BLAST of CF509996 vs. ExPASy Swiss-Prot
Match: FLA18_ARATH (Fasciclin-like arabinogalactan protein 18 OS=Arabidopsis thaliana GN=FLA18 PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 8.042e-73
Identity = 131/143 (91.61%), Postives = 137/143 (95.80%), Query Frame = 3 
Query:  120 HRHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHIIPEYQTEESMYNSVRRFGKVKYDTLRLPHKVTAQEADGSVKFGTSDGSAYLFDPDIYTDGR 548
            H+HFNG+ QVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAM KLTTDQLSEPGAPEQI+YYHIIPEYQTEESMYNSVRRFGKVKY+TLR PHKV A+EADGSVKFG+ D SAYLFDPDIYTDGR
Sbjct:  262 HKHFNGDAQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMGKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNSVRRFGKVKYETLRFPHKVGAKEADGSVKFGSGDRSAYLFDPDIYTDGR 404
[Close]
BLAST of CF509996 vs. ExPASy Swiss-Prot
Match: FLA17_ARATH (Fasciclin-like arabinogalactan protein 17 OS=Arabidopsis thaliana GN=FLA17 PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.161e-71
Identity = 130/141 (92.20%), Postives = 135/141 (95.74%), Query Frame = 3 
Query:  126 HFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHIIPEYQTEESMYNSVRRFGKVKYDTLRLPHKVTAQEADGSVKFGTSDGSAYLFDPDIYTDGR 548
            HF+GE QVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQI+YYHIIPEYQTEESMYNSVRRFGKVK+DTLR PHKV A+EADGSVKFG  + SAYLFDPDIYTDGR
Sbjct:  261 HFDGEAQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIVYYHIIPEYQTEESMYNSVRRFGKVKFDTLRFPHKVAAKEADGSVKFGDGEKSAYLFDPDIYTDGR 401
The following BLAST results are available for this feature:
BLAST of CF509996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
FLA15_ARATH3.610e-7393.62Fasciclin-like arabinogalactan protein 15 OS=Arabi... [more]
FLA16_ARATH6.157e-7393.62Fasciclin-like arabinogalactan protein 16 OS=Arabi... [more]
FLA18_ARATH8.042e-7391.61Fasciclin-like arabinogalactan protein 18 OS=Arabi... [more]
FLA17_ARATH1.161e-7192.20Fasciclin-like arabinogalactan protein 17 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-510 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509996 ID=CF509996; Name=CF509996; organism=Citrus sinensis; type=EST; length=548bp
GTTTAAAGAAACCGGCCGCTCCGGTTCCCGCTGGTGCCCCTCCGATTCTT
CCTATATACGACGCGATGGCTCCCGGTCCCTCGCTAGCACCGGCTCCGGC
TCCAGGACCCGGCGGAGCGCACCGTCATTTCAACGGCGAGAGGCAGGTGA
AGGATTTCATTCACACGCTGTTGCATTACGGAGGGTACAACGAAATGGCG
GATATTCTGGTGAACTTGACGTCGTTAGCGACGGAAATGGGCCGTTTGGT
GTCCGAGGGATACGTCCTGACGGTGCTGGCCCCGAACGACGAGGCGATGG
CGAAGCTGACGACGGATCAATTGAGCGAACCGGGGGCGCCGGAACAGATT
ATTTATTACCACATTATCCCGGAGTATCAAACGGAGGAGAGCATGTACAA
CTCCGTTAGGAGATTTGGGAAAGTGAAGTACGATACGTTAAGGTTGCCGC
ATAAAGTAACGGCGCAAGAGGCTGATGGGTCGGTGAAATTCGGGACGAGT
GACGGGTCAGCTTATTTGTTTGACCCGGATATTTATACTGATGGCAGG
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