CF509998

Overview
NameCF509998
Unique NameCF509998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig935 contig Csv1_Contig935:1..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509998 vs. ExPASy Swiss-Prot
Match: MEP1_SOYBN (Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 6.895e-44
Identity = 89/166 (53.61%), Postives = 105/166 (63.25%), Query Frame = 1
Query:    4 MPRWPSNKRDLTYAFLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNNP 501
            MPRW +    LTYAF P+ +L D  K+  A AF +W+   ++ F  T  Y TA+I+I F + +HGD  PFDGP G L HAF+P +GR H D DE WV              DLESVAVHEIGHLLGLGHSS   AIMYPSI   +RKV LA DDI GI+ LYG NP
Sbjct:  140 MPRWQAGTTQLTYAFSPEPRLDDTFKSAIARAFSKWTPVVNIAFQETTSYETANIKILFASKNHGDPYPFDGPGGILGHAFAPTDGRCHFDADEYWVASGDVTKSPVTSAFDLESVAVHEIGHLLGLGHSSDLRAIMYPSIPPRTRKVNLAQDDIDGIRKLYGINP 305          
BLAST of CF509998 vs. ExPASy Swiss-Prot
Match: MMP1_HUMAN (Interstitial collagenase OS=Homo sapiens GN=MMP1 PE=1 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 2.632e-27
Identity = 78/174 (44.83%), Postives = 90/174 (51.72%), Query Frame = 1
Query:    1 GMPRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNNPN 504
            G PRW   +  LTY    + PD    D V +    AF  WS  T LTFT+      ADI I F  GDH D  PFDGP G LAHAF P     G  H D DE W               +L  VA HE+GH LGL HS+   A+MYPS +  S  V+LA DDI GIQA+YG + N
Sbjct:  105 GNPRW--EQTHLTYRIENYTPDLPRAD-VDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWT--------NNFREYNLHRVAAHELGHSLGLSHSTDIGALMYPSYTF-SGDVQLAQDDIDGIQAIYGRSQN 265          
BLAST of CF509998 vs. ExPASy Swiss-Prot
Match: MMP1_RABIT (Interstitial collagenase OS=Oryctolagus cuniculus GN=MMP1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.000e-26
Identity = 77/174 (44.25%), Postives = 89/174 (51.15%), Query Frame = 1
Query:    1 GMPRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNNPN 504
            G PRW   +  LTY    + PD    D V N    AF  WS  T LTFT+      ADI I F  GDH D  PFDGP G LAHAF P     G  H D D+ W               +L  VA HE+GH LGL HS+   A+MYP+    S  V+LA DDI GIQA+YG + N
Sbjct:  104 GNPRW--EQTHLTYRIENYTPDLSRAD-VDNAIEKAFQLWSNVTPLTFTKVSK-GQADIMISFVRGDHRDNSPFDGPEGQLAHAFQPGLGIGGDVHFDEDDRWT--------KDFRNYNLYRVAAHELGHSLGLSHSTDIGALMYPNYMF-SGDVQLAQDDIDGIQAIYGPSQN 264          
BLAST of CF509998 vs. ExPASy Swiss-Prot
Match: HE_PARLI (Hatching enzyme OS=Paracentrotus lividus PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.000e-26
Identity = 72/179 (40.22%), Postives = 93/179 (51.96%), Query Frame = 1
Query:   19 SNKRDLTYAF--LPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNNPNFNGSSAPTDQQRDTS 549
            S  + +TY+F  L  +   ++VK+    AF  W + + L+F      T+ DIRI F + DHGDG  FDG  G LAHAF P NG  H D  E W               +L  VA HE GH LGL HS+V  A+MYP          L NDDI GI++LYG+N   +GS   T  +R T+
Sbjct:  175 SRNQPVTYSFGALTSDLNQNDVKDEIRRAFRVWDDVSGLSFREVPDTTSVDIRIKFGSYDHGDGISFDGRGGVLAHAFLPRNGDAHFDDSETWT-------EGTRSGTNLFQVAAHEFGHSLGLYHSTVRSALMYPYYQGYVPNFRLDNDDIAGIRSLYGSN---SGSGTTTTTRRPTT 343          
BLAST of CF509998 vs. ExPASy Swiss-Prot
Match: MMP20_PIG (Matrix metalloproteinase-20 OS=Sus scrofa GN=MMP20 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.801e-26
Identity = 70/175 (40.00%), Postives = 83/175 (47.43%), Query Frame = 1
Query:    1 GMPRWPSNKRDLTYAFLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYGNNPNFNG 513
            G P+W  N      +    +    EV      A   WS A  L+F R +    ADI I F TGDHGD  PFDGP GTLAHAF+P     G  H D  E W               +L +VA HE GH LGL HS+   A+MYP+          L  DD++GIQALYG    F G
Sbjct:  113 GEPKWKKNTLTYRISKYTPSMTPAEVDKAMEMALQAWSSAVPLSFVRVNA-GEADIMISFETGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWT--------MGMNGFNLFTVAAHEFGHALGLAHSTDPSALMYPTYKYQNPYGFHLPKDDVKGIQALYGPRKTFTG 278          
BLAST of CF509998 vs. ExPASy Swiss-Prot
Match: MMP18_XENLA (Matrix metalloproteinase-18 OS=Xenopus laevis GN=mmp18 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.964e-26
Identity = 77/180 (42.78%), Postives = 92/180 (51.11%), Query Frame = 1
Query:   25 KRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYT-TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPN---GRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKV-ELANDDIQGIQALYGNNPNFNGSSAPTDQQR 540
            K+DLTY    F PD    D V+     AF  WS+ T LTFTR  +Y   +DI I F  GDH D  PFDG  G LAHAF P N   G  H D DE W               +L  VA HE GH LGL HS+ + A+MYP+ S+   K  +L  DDI  IQ LYG + N    + P+   R
Sbjct:  111 KKDLTYRILNFTPDLPQAD-VETAIQRAFKVWSDVTPLTFTR--IYNEVSDIEISFTAGDHKDNSPFDGSGGILAHAFQPGNGIGGDAHFDEDETWT--------KTSEIYNLFLVAAHEFGHSLGLSHSTDQGALMYPTYSNTDPKTFQLPQDDINAIQYLYGKSSNPVQPTGPSTPSR 279          
BLAST of CF509998 vs. ExPASy Swiss-Prot
Match: MMP20_MOUSE (Matrix metalloproteinase-20 OS=Mus musculus GN=Mmp20 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.467e-26
Identity = 71/175 (40.57%), Postives = 84/175 (48.00%), Query Frame = 1
Query:    1 GMPRWPSNKRDLTYAFLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYGNNPNFNG 513
            G P+W  N      +    +    EV      A   WS A  L F R +    ADI I F TGDHGD  PFDGP GTLAHAF+P     G  H D  E W               +L +VA HE GH LGLGHS+   A+MYP+       +  L  DD++GIQALYG    F G
Sbjct:  112 GEPKWKKNILTYRISKYTPSMSPTEVDKAIQMALHAWSTAVPLNFVRINS-GEADIMISFETGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWT--------MGTNGFNLFTVAAHEFGHALGLGHSTDPSALMYPTYKYQNPYRFHLPKDDVKGIQALYGPRKIFPG 277          
BLAST of CF509998 vs. ExPASy Swiss-Prot
Match: HE_HEMPU (50 kDa hatching enzyme OS=Hemicentrotus pulcherrimus PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.467e-26
Identity = 71/177 (40.11%), Postives = 90/177 (50.85%), Query Frame = 1
Query:   13 WPSNKRDLTYAF--LPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNNPNFNGSSAPTDQQ 537
            WP N   +TY+F  L ++     +KN    AF  W + +SLTF      ++ DIRI F + +HGDG  FDG  G LAHAF P NG  H D  E W               +L  VA HE GH LGL HS V+ A+MYP     +    L  DDI GI +LYG N    GS+  T ++
Sbjct:  177 WPRNVA-VTYSFGTLSNDLSQTAIKNELRRAFQVWDDVSSLTFREVVDSSSVDIRIKFGSYEHGDGISFDGQGGVLAHAFLPRNGDAHFDDSERWT-------IGTNSGTNLFQVAAHEFGHSLGLYHSDVQSALMYPYYRGYNPNFNLDRDDIAGITSLYGRN---TGSTTTTTRR 342          
BLAST of CF509998 vs. ExPASy Swiss-Prot
Match: MMP1_PIG (Interstitial collagenase OS=Sus scrofa GN=MMP1 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.444e-25
Identity = 79/186 (42.47%), Postives = 93/186 (50.00%), Query Frame = 1
Query:    1 GMPRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPS-ISSGSRKVELANDDIQGIQALYGNNPNFNGSSAPTDQQ 537
            G PRW +    LTY    + PD    D V      AF  WS  + LTFT+      ADI I F  GDH D  PFDGP G LAHAF P     G  H D DE W               +L  VA HE+GH LGL HS+   A+MYP+ I +G   V+L+ DDI GIQA+YG + N    S P   Q
Sbjct:  105 GNPRWENTH--LTYRIENYTPDLSRED-VDRAIEKAFQLWSNVSPLTFTKVSE-GQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWT--------KNFRDYNLYRVAAHELGHSLGLSHSTDIGALMYPNYIYTGD--VQLSQDDIDGIQAIYGPSENPVQPSGPQTPQ 276          
BLAST of CF509998 vs. ExPASy Swiss-Prot
Match: MMP3_CANFA (Stromelysin-1 OS=Canis familiaris GN=MMP3 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.886e-25
Identity = 75/187 (40.11%), Postives = 96/187 (51.34%), Query Frame = 1
Query:    1 GMPRWPSNKRDLTYAFL---PDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGRF---HLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYP--SISSGSRKVELANDDIQGIQALYGNNP--NFNGSSAPTD 531
            GMP+W   K  LTY  +   PD    D V +    A + W E T LTF+RTD    ADI+I F   DHGD  PFDGP   L HA+ P  G +   H D DE W               +L  VA HE+GH LGL HS+   A+MYP  ++ +   +  L+ DD+ GIQ+LYG  P  + N    PT+
Sbjct:  105 GMPKW--RKTHLTYRIMNYTPDLP-RDAVDSAIEKALNVWKEVTPLTFSRTDE-GEADIKISFAVRDHGDFNPFDGPGNVLGHAYPPGPGIYGDAHFDDDEQWT--------SDTSGTNLFLVAAHELGHSLGLFHSADPSALMYPVYNVLADLARFHLSQDDVNGIQSLYGGPPSDSSNDPVVPTE 279          
The following BLAST results are available for this feature:
BLAST of CF509998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
MEP1_SOYBN6.895e-4453.61Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2[more]
MMP1_HUMAN2.632e-2744.83Interstitial collagenase OS=Homo sapiens GN=MMP1 P... [more]
MMP1_RABIT1.000e-2644.25Interstitial collagenase OS=Oryctolagus cuniculus ... [more]
HE_PARLI1.000e-2640.22Hatching enzyme OS=Paracentrotus lividus PE=1 SV=1[more]
MMP20_PIG3.801e-2640.00Matrix metalloproteinase-20 OS=Sus scrofa GN=MMP20... [more]
MMP18_XENLA4.964e-2642.78Matrix metalloproteinase-18 OS=Xenopus laevis GN=m... [more]
MMP20_MOUSE8.467e-2640.57Matrix metalloproteinase-20 OS=Mus musculus GN=Mmp... [more]
HE_HEMPU8.467e-2640.1150 kDa hatching enzyme OS=Hemicentrotus pulcherrim... [more]
MMP1_PIG1.444e-2542.47Interstitial collagenase OS=Sus scrofa GN=MMP1 PE=... [more]
MMP3_CANFA1.886e-2540.11Stromelysin-1 OS=Canis familiaris GN=MMP3 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-513 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509998 ID=CF509998; Name=CF509998; organism=Citrus sinensis; type=EST; length=582bp
GGCATGCCACGTTGGCCTTCGAATAAGCGCGATCTGACGTACGCGTTCTT
GCCCGATAACCAATTGACTGACGAAGTCAAGAACGTATTTGCGACAGCCT
TTGACCGCTGGTCGGAAGCGACGTCGTTGACTTTCACTCGGACGGACGTT
TACACGACCGCCGATATCAGGATCGGGTTCTTTACTGGCGATCACGGTGA
CGGCGAGCCGTTTGATGGGCCTATGGGCACGCTGGCGCACGCCTTCTCGC
CACCAAATGGACGGTTCCATTTAGACGGCGACGAGAACTGGGTAATCACG
AGTGGTACTACAACGTCGATATCGATGTCGGCGATTGATCTTGAGTCAGT
TGCTGTTCATGAGATTGGCCACTTGTTAGGGTTGGGGCATTCATCTGTTG
AAGATGCGATAATGTACCCTTCAATTTCTTCTGGATCCAGGAAAGTTGAA
TTGGCCAACGATGATATACAGGGGATCCAGGCCCTGTACGGTAATAATCC
AAATTTTAACGGCTCATCTGCGCCGACCGATCAACAGAGGGACACCAGCG
ATGCCCATGGGGGCTTATTTTTTGGGCTCTTG
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