CF510000

Overview
NameCF510000
Unique NameCF510000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3233 contig Csv1_Contig3233:641..1217. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510000 vs. ExPASy Swiss-Prot
Match: DECR2_ARATH (Peroxisomal 2,4-dienoyl-CoA reductase OS=Arabidopsis thaliana GN=At3g12800 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.484e-73
Identity = 122/165 (73.94%), Postives = 134/165 (81.21%), Query Frame = 3
Query:   87 SVAIMGRRKQVLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKK-XXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGP 578
            S+AIMGRRKQVLD AVSALRSLGI+A+G EGDVR+QE A++VVE+TF+HFGKLDILVNAAAGNFL +AEDLSPNGFRTV+DID+VGTF MCH ALKYLKK             I+NISATLHYTASWYQIH           TRNLALEWG DYDIRVNGIAPGP
Sbjct:   38 SIAIMGRRKQVLDDAVSALRSLGIQAIGLEGDVRKQEDARRVVEATFQHFGKLDILVNAAAGNFLAAAEDLSPNGFRTVLDIDAVGTFNMCHAALKYLKKGAPGRDSSSGGGSIINISATLHYTASWYQIHVSAAKAAVDATTRNLALEWGTDYDIRVNGIAPGP 202          

HSP 2 Score: 54.299 bits (129), Expect = 3.484e-73
Identity = 24/28 (85.71%), Postives = 28/28 (100.00%), Query Frame = 2
Query:    2 LKGKVALITGGGSGIGFEISTQFGKHGA 85
            ++G+VALITGGGSGIGFEIS+QFGKHGA
Sbjct:   10 VRGQVALITGGGSGIGFEISSQFGKHGA 37          
BLAST of CF510000 vs. ExPASy Swiss-Prot
Match: DECR2_MOUSE (Peroxisomal 2,4-dienoyl-CoA reductase OS=Mus musculus GN=Decr2 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.095e-25
Identity = 61/161 (37.89%), Postives = 86/161 (53.42%), Query Frame = 3
Query:   96 IMGRRKQ-VLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPG 575
            I+GR  Q V  AA   + + G + +    DVR        V+   + FGK++IL+N AAGNFL  A  LS N F+TV+DID++GTF +   ++ Y K             I+NI+ATL       Q+H          +TR+LA+EWG   +IRVN +APG
Sbjct:   57 IVGRSLQKVTTAAKKLVAATGKRCLPLSMDVRVPPEVMTAVDQALQEFGKINILINCAAGNFLCPASALSFNAFKTVVDIDTIGTFNV--SSVLYKK-----FFRDHGGVIVNITATLSMRGQVLQLHAGAAKAAVDAMTRHLAVEWGPQ-NIRVNSLAPG 209          

HSP 2 Score: 40.0466 bits (92), Expect = 7.095e-25
Identity = 20/36 (55.56%), Postives = 24/36 (66.67%), Query Frame = 2
Query:    2 LKGKVALITGGGSGIGFEISTQFGKHGAFSCNHGTS 109
            L+ KVA ITGGGSGIGF I+  F +HG  +   G S
Sbjct:   26 LQDKVAFITGGGSGIGFRIAEIFMRHGCHTVIVGRS 61          
BLAST of CF510000 vs. ExPASy Swiss-Prot
Match: DECR2_DANRE (Peroxisomal 2,4-dienoyl-CoA reductase OS=Danio rerio GN=decr2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.563e-24
Identity = 59/156 (37.82%), Postives = 82/156 (52.56%), Query Frame = 3
Query:  111 KQVLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGP 578
            +++  AA     + G + +    DVR+ E     V+ T + FG++DIL+N AAGNFL  A  LS N F+TVM+ID++GTF          K             I+NISATL Y     Q+H          +TR+LA+EWG    +RVN +APGP
Sbjct:   70 EKISQAAKKLTSTTGRRCLPIAMDVRQPETILAAVDETLKTFGRVDILINNAAGNFLCPATSLSFNAFKTVMEIDTMGTFNTS-------KVIYDKWFKDHGGSIVNISATLGYRGQALQVHAGSAKAANDAMTRHLAVEWGPS-GVRVNTVAPGP 217          

HSP 2 Score: 35.4242 bits (80), Expect = 1.563e-24
Identity = 16/27 (59.26%), Postives = 19/27 (70.37%), Query Frame = 2
Query:    2 LKGKVALITGGGSGIGFEISTQFGKHG 82
            L  +VA ITGGGSGIGF I+    +HG
Sbjct:   33 LSDQVAFITGGGSGIGFRIAEVLMRHG 59          
BLAST of CF510000 vs. ExPASy Swiss-Prot
Match: DECR2_HUMAN (Peroxisomal 2,4-dienoyl-CoA reductase OS=Homo sapiens GN=DECR2 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.035e-24
Identity = 60/155 (38.71%), Postives = 81/155 (52.26%), Query Frame = 3
Query:  114 QVLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGP 578
            +VL AA     + G + +    DVR        V+   + FG++DIL+N AAGNFL  A  LS N F+TVMDID+ GTF +    + Y K             I+NI+ATL       Q+H          +TR+LA+EWG   +IRVN +APGP
Sbjct:   64 RVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNV--SRVLYEK-----FFRDHGGVIVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEWGPQ-NIRVNSLAPGP 210          

HSP 2 Score: 39.6614 bits (91), Expect = 2.035e-24
Identity = 18/27 (66.67%), Postives = 21/27 (77.78%), Query Frame = 2
Query:    2 LKGKVALITGGGSGIGFEISTQFGKHG 82
            L+ KVA ITGGGSGIGF I+  F +HG
Sbjct:   26 LRDKVAFITGGGSGIGFRIAEIFMRHG 52          
BLAST of CF510000 vs. ExPASy Swiss-Prot
Match: DECR2_PONAB (Peroxisomal 2,4-dienoyl-CoA reductase OS=Pongo abelii GN=DECR2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.447e-24
Identity = 60/155 (38.71%), Postives = 81/155 (52.26%), Query Frame = 3
Query:  114 QVLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGP 578
            +VL AA     + G + +    DVR        V+   + FG++DIL+N AAGNFL  A  LS N F+TVMDID+ GTF +    + Y K             I+NI+ATL       Q+H          +TR+LA+EWG   +IRVN +APGP
Sbjct:   64 RVLTAARKLAGATGRRCLPLSMDVRAPPAIVAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNV--SRVLYEK-----FFRDHGGVIVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEWGPQ-NIRVNSLAPGP 210          

HSP 2 Score: 39.6614 bits (91), Expect = 3.447e-24
Identity = 18/27 (66.67%), Postives = 21/27 (77.78%), Query Frame = 2
Query:    2 LKGKVALITGGGSGIGFEISTQFGKHG 82
            L+ KVA ITGGGSGIGF I+  F +HG
Sbjct:   26 LRDKVAFITGGGSGIGFRIAEIFMRHG 52          
BLAST of CF510000 vs. ExPASy Swiss-Prot
Match: DECR2_RAT (Peroxisomal 2,4-dienoyl-CoA reductase OS=Rattus norvegicus GN=Decr2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.838e-24
Identity = 58/154 (37.66%), Postives = 82/154 (53.25%), Query Frame = 3
Query:  114 QVLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPG 575
            +V +AA   + + G + +    DVR        V+   + FGK+DIL+N AAGNFL  A  LS N F+TV+DID++GTF +    + Y K             I+NI+ATL       Q+H          +TR+LA+EWG   +IRVN +APG
Sbjct:   64 RVSEAAKKLVAATGKRCLPLSMDVRVPPAVMAAVDQALKEFGKIDILINCAAGNFLCPASALSFNAFKTVVDIDTLGTFNV--SRVLYEK-----FFRDHGGVIVNITATLSMRGQVLQLHAGAAKAAVDAMTRHLAVEWGPQ-NIRVNSLAPG 209          

HSP 2 Score: 39.2762 bits (90), Expect = 5.838e-24
Identity = 18/27 (66.67%), Postives = 21/27 (77.78%), Query Frame = 2
Query:    2 LKGKVALITGGGSGIGFEISTQFGKHG 82
            L+ KVA ITGGGSGIGF I+  F +HG
Sbjct:   26 LQDKVAFITGGGSGIGFRIAEIFMRHG 52          
BLAST of CF510000 vs. ExPASy Swiss-Prot
Match: FADH_BACSU (Probable 2,4-dienoyl-CoA reductase OS=Bacillus subtilis GN=fadH PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.573e-20
Identity = 55/163 (33.74%), Postives = 84/163 (51.53%), Query Frame = 3
Query:   90 VAIMGRRKQVLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGP 578
            V + GR  + L+     +++   +   F+ DVR    A  +++   + FG+LD L+N AAGNF+  AE L+PNG++ V++I   GTF     A ++               ILN++AT  + A    +H          +TR LA+EWG+ Y IR N IAPGP
Sbjct:   30 VMVTGRNHEALEETKKEIQTFEGQVACFQMDVRSDSAASDMIKEAVKAFGRLDALINNAAGNFICPAEKLTPNGWKAVIEIVLNGTFFCSQAAARH------WIDQKQQGVILNMAATYAWGAGAGVVHSAAAKAGVLSLTRTLAVEWGSKYGIRTNAIAPGP 186          

HSP 2 Score: 22.3274 bits (46), Expect = 1.573e-20
Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = 2
Query:    2 LKGKVALITGGGSGIG 49
            ++ K  +ITGG SG+G
Sbjct:    1 MEKKAVIITGGSSGMG 16          
BLAST of CF510000 vs. ExPASy Swiss-Prot
Match: SPS19_YEAST (Peroxisomal 2,4-dienoyl-CoA reductase SPS19 OS=Saccharomyces cerevisiae GN=SPS19 PE=1 SV=4)

HSP 1 Score: 88.5817 bits (218), Expect = 5.080e-18
Identity = 60/166 (36.14%), Postives = 84/166 (50.60%), Query Frame = 3
Query:   93 AIMGRRKQVLDAAVSALRSLG-----IKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPG 575
            AI+GR ++  + A   +  L      + A+    DVR  E  +  V+ T E FGK+D ++  AAGNF+    +LSPN F++V+DID +G+F      LK LKK            IL +SAT HY    +Q H          + +NLA+E G    IR N IAPG
Sbjct:   52 AIVGRDQERTEQAAKGISQLAKDKDAVLAIA-NVDVRNFEQVENAVKKTVEKFGKIDFVIAGAAGNFVCDFANLSPNAFKSVVDIDLLGSFNTAKACLKELKK--------SKGSILFVSATFHYYGVPFQGHVGAAKAGIDALAKNLAVELG-PLGIRSNCIAPG 207          

HSP 2 Score: 22.3274 bits (46), Expect = 5.080e-18
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 2
Query:    5 KGKVALITGGGSGI 46
            KGKVA +TGG   I
Sbjct:   23 KGKVAFVTGGAGTI 36          
BLAST of CF510000 vs. ExPASy Swiss-Prot
Match: YVX3_CAEEL (Uncharacterized oxidoreductase T05C12.3 OS=Caenorhabditis elegans GN=T05C12.3 PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 7.413e-16
Identity = 49/166 (29.52%), Postives = 78/166 (46.99%), Query Frame = 3
Query:   87 SVAIMGRRKQVLD-AAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKL-DILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGP 578
            SVAI  RR + L+  A   +++ G     F  D++         +   + FGK  DILVN AAGNF+++ E LSPN   T++DI   GT  +  E  K                + +I+A    + + + +           +T++LA EW + Y +R N ++PGP
Sbjct:   51 SVAIAARRMEKLEQTAEEIMKTTGGICEPFRMDIKDPGMVSDTFDKIDKKFGKHPDILVNNAAGNFIMATERLSPNAHGTIIDIVLKGTMNVTTELGK------RCIQSKTGASVTSITAAYARSGAPFIVPSAVSKAGVEIMTKSLATEW-SKYGLRFNAVSPGP 209          

HSP 2 Score: 40.0466 bits (92), Expect = 7.413e-16
Identity = 19/28 (67.86%), Postives = 22/28 (78.57%), Query Frame = 2
Query:    2 LKGKVALITGGGSGIGFEISTQFGKHGA 85
            LKGKVAL+TGGG+GIG  I+T F   GA
Sbjct:   23 LKGKVALVTGGGTGIGKAIATTFAHLGA 50          
BLAST of CF510000 vs. ExPASy Swiss-Prot
Match: PECR_MOUSE (Peroxisomal trans-2-enoyl-CoA reductase OS=Mus musculus GN=Pecr PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.721e-14
Identity = 49/171 (28.65%), Postives = 80/171 (46.78%), Query Frame = 3
Query:   87 SVAIMGRRKQVLDAAVSALR-----SLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHY---TASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPG 575
            +V I  R+   L AAV  LR     S   +    + ++R++E    +V+ST   +GK++ LVN   G F+   ED++  G+  V++ +  GTF MC E      +            I+NI   L+    TA+    H          +T+++AL W A   +R+N +APG
Sbjct:   44 NVVIASRKLDRLTAAVDELRASLPPSSSAEVSAIQCNIRKEEEVSNLVKSTLAKYGKINFLVNNGGGQFMAPVEDITAKGWHAVIETNLTGTFYMCKEVYNSWMR-------EHGGSIVNIIVLLNNGFPTAA----HTGAAREGVYNLTKSMALAW-ASSGVRINCVAPG 202          

HSP 2 Score: 30.0314 bits (66), Expect = 1.721e-14
Identity = 12/22 (54.55%), Postives = 18/22 (81.82%), Query Frame = 2
Query:    2 LKGKVALITGGGSGIGFEISTQ 67
            LK +VA++TGGG+GIG  +S +
Sbjct:   16 LKNQVAVVTGGGTGIGKAVSRE 37          
The following BLAST results are available for this feature:
BLAST of CF510000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
DECR2_ARATH3.484e-7373.94Peroxisomal 2,4-dienoyl-CoA reductase OS=Arabidops... [more]
DECR2_MOUSE7.095e-2537.89Peroxisomal 2,4-dienoyl-CoA reductase OS=Mus muscu... [more]
DECR2_DANRE1.563e-2437.82Peroxisomal 2,4-dienoyl-CoA reductase OS=Danio rer... [more]
DECR2_HUMAN2.035e-2438.71Peroxisomal 2,4-dienoyl-CoA reductase OS=Homo sapi... [more]
DECR2_PONAB3.447e-2438.71Peroxisomal 2,4-dienoyl-CoA reductase OS=Pongo abe... [more]
DECR2_RAT5.838e-2437.66Peroxisomal 2,4-dienoyl-CoA reductase OS=Rattus no... [more]
FADH_BACSU1.573e-2033.74Probable 2,4-dienoyl-CoA reductase OS=Bacillus sub... [more]
SPS19_YEAST5.080e-1836.14Peroxisomal 2,4-dienoyl-CoA reductase SPS19 OS=Sac... [more]
YVX3_CAEEL7.413e-1629.52Uncharacterized oxidoreductase T05C12.3 OS=Caenorh... [more]
PECR_MOUSE1.721e-1428.65Peroxisomal trans-2-enoyl-CoA reductase OS=Mus mus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-515 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510000 ID=CF510000; Name=CF510000; organism=Citrus sinensis; type=EST; length=578bp
ATTGAAAGGCAAAGTCGCTTTGATCACAGGAGGTGGTTCGGGAATTGGGT
TTGAGATATCAACCCAATTCGGTAAACATGGAGCCTTCAGTTGCAATCAT
GGGACGTCGCAAGCAAGTCCTTGATGCTGCTGTTTCTGCTCTTCGGTCTC
TTGGAATCAAGGCTGTTGGCTTTGAAGGAGATGTTCGTAGGCAGGAACAT
GCGAAAAAAGTTGTGGAATCAACTTTTGAGCATTTTGGGAAGCTTGACAT
TCTTGTGAATGCTGCGGCCGGCAACTTTCTTGTATCAGCTGAGGATTTGT
CCCCTAATGGGTTTCGAACAGTTATGGATATTGATTCTGTCGGCACATTC
ACAATGTGCCATGAAGCACTTAAATATCTTAAAAAAGGTGGACCTGGGAG
AAGCTCAGCTGGTGGTGGATCCATTTTGAACATTAGTGCTACTTTACATT
ATACAGCTTCTTGGTACCAAATACATGTAGCTGCAGCCAAGGCAGCTGTT
GATGCCATTACCAGAAACTTGGCACTGGAATGGGGAGCTGACTATGATAT
TCGAGTCAATGGAATTGCCCCAGGCCCC
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