CF510007

Overview
NameCF510007
Unique NameCF510007
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length445
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF510007 vs. ExPASy Swiss-Prot
Match: PP325_ARATH (Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 1.186e-39
Identity = 80/148 (54.05%), Postives = 108/148 (72.97%), Query Frame = 2 
Query:    2 LLIRLIDGKMPVLYASNPSIRHIEIASQMVDLNVTSEPALGVQIADLLVHVYCTQFKNLGFGYAIDVFSIFSNKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPN 445
            +LIRLI+G +PVL       R + IA  M  L++  +  +  +++DLL+ VYCTQFK  G   A+DVF + +NKG+FPS  TCN LL SLV+ANE QK  E F+ +C+GVSPDV+LF+TAINAFCK G++E+A+ LF+KMEE G+APN
Sbjct:  161 VLIRLINGNVPVLPCGLRDSR-VAIADAMASLSLCFDEEIRRKMSDLLIEVYCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPN 307
The following BLAST results are available for this feature:
BLAST of CF510007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PP325_ARATH1.186e-3954.05Pentatricopeptide repeat-containing protein At4g19... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-522 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510007 ID=CF510007; Name=CF510007; organism=Citrus sinensis; type=EST; length=445bp
GCTTTTGATCCGTTTGATTGATGGGAAGATGCCGGTTTTGTATGCAAGCA
ATCCCAGTATTAGGCACATTGAGATAGCTTCTCAAATGGTTGATTTGAAT
GTTACTTCCGAGCCGGCTCTTGGTGTTCAAATAGCTGATTTGTTAGTACA
TGTTTATTGTACACAGTTCAAGAATTTGGGCTTCGGTTATGCTATTGATG
TGTTTTCCATTTTCTCTAATAAGGGTATTTTCCCCTCATTGAAGACTTGC
AATTTTTTGTTGAATTCTTTAGTGAAAGCTAATGAGGTGCAAAAGGGAAT
TGAAGTTTTTGAGACTATGTGCCGTGGTGTTTCTCCTGATGTTTTCTTGT
TTAGCACTGCGATTAATGCATTTTGTAAGAGAGGAAGGATTGAGGATGCA
ATTGGCTTATTTACCAAAATGGAAGAATTGGGTATTGCTCCTAAT
back to top