CF510030

Overview
NameCF510030
Unique NameCF510030
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length290
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510030 vs. ExPASy Swiss-Prot
Match: REV_ARATH (Homeobox-leucine zipper protein REVOLUTA OS=Arabidopsis thaliana GN=REV PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 1.248e-37
Identity = 76/96 (79.17%), Postives = 88/96 (91.67%), Query Frame = 1
Query:    1 ESSKVVAQRMTIAALRYVRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAF 288
            ESSKVVAQ+MTI+ALRY+RQ+AQE++GEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGF DDGWS M CDGAED+I+A+NSTK L   +N +NSL+F
Sbjct:  350 ESSKVVAQKMTISALRYIRQLAQESNGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFGDDGWSTMHCDGAEDIIVAINSTKHL---NNISNSLSF 442          
BLAST of CF510030 vs. ExPASy Swiss-Prot
Match: HOX10_ORYSJ (Homeobox-leucine zipper protein HOX10 OS=Oryza sativa subsp. japonica GN=HOX10 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.203e-34
Identity = 70/89 (78.65%), Postives = 80/89 (89.89%), Query Frame = 1
Query:    1 ESSKVVAQRMTIAALRYVRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSLMTCDGAEDVIIAVNSTKSLSTASN 267
            ESS+VVAQ+MT AALR++RQIAQETSGEVVY LGRQPAVLRTFSQRLSRGFNDA++GFNDDGWS+M  DG EDV+IA NSTK + + SN
Sbjct:  354 ESSRVVAQKMTTAALRHIRQIAQETSGEVVYALGRQPAVLRTFSQRLSRGFNDAISGFNDDGWSIMGGDGVEDVVIACNSTKKIRSNSN 442          
BLAST of CF510030 vs. ExPASy Swiss-Prot
Match: HOX10_ORYSI (Homeobox-leucine zipper protein HOX10 OS=Oryza sativa subsp. indica GN=HOX10 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 2.203e-34
Identity = 70/89 (78.65%), Postives = 80/89 (89.89%), Query Frame = 1
Query:    1 ESSKVVAQRMTIAALRYVRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSLMTCDGAEDVIIAVNSTKSLSTASN 267
            ESS+VVAQ+MT AALR++RQIAQETSGEVVY LGRQPAVLRTFSQRLSRGFNDA++GFNDDGWS+M  DG EDV+IA NSTK + + SN
Sbjct:  354 ESSRVVAQKMTTAALRHIRQIAQETSGEVVYALGRQPAVLRTFSQRLSRGFNDAISGFNDDGWSIMGGDGVEDVVIACNSTKKIRSNSN 442          
BLAST of CF510030 vs. ExPASy Swiss-Prot
Match: HOX9_ORYSJ (Homeobox-leucine zipper protein HOX9 OS=Oryza sativa subsp. japonica GN=HOX9 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.209e-32
Identity = 68/89 (76.40%), Postives = 80/89 (89.89%), Query Frame = 1
Query:    1 ESSKVVAQRMTIAALRYVRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSLMTCDGAEDVIIAVNSTKSLSTASN 267
            ESS+VVAQ+MT AALR++RQIAQETSGEVVY LGRQPAVLRTFSQRLSRGFNDA++GFNDDGWS+M  DG EDVIIA N+ K  +T+++
Sbjct:  356 ESSRVVAQKMTTAALRHIRQIAQETSGEVVYALGRQPAVLRTFSQRLSRGFNDAISGFNDDGWSVMGGDGIEDVIIACNAKKVRNTSTS 444          
BLAST of CF510030 vs. ExPASy Swiss-Prot
Match: HOX9_ORYSI (Homeobox-leucine zipper protein HOX9 OS=Oryza sativa subsp. indica GN=HOX9 PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 1.209e-32
Identity = 68/89 (76.40%), Postives = 80/89 (89.89%), Query Frame = 1
Query:    1 ESSKVVAQRMTIAALRYVRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSLMTCDGAEDVIIAVNSTKSLSTASN 267
            ESS+VVAQ+MT AALR++RQIAQETSGEVVY LGRQPAVLRTFSQRLSRGFNDA++GFNDDGWS+M  DG EDVIIA N+ K  +T+++
Sbjct:  356 ESSRVVAQKMTTAALRHIRQIAQETSGEVVYALGRQPAVLRTFSQRLSRGFNDAISGFNDDGWSVMGGDGIEDVIIACNAKKVRNTSTS 444          
BLAST of CF510030 vs. ExPASy Swiss-Prot
Match: HOX32_ORYSJ (Homeobox-leucine zipper protein HOX32 OS=Oryza sativa subsp. japonica GN=HOX32 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.888e-31
Identity = 67/96 (69.79%), Postives = 79/96 (82.29%), Query Frame = 1
Query:    1 ESSKVVAQRMTIAALRYVRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAF 288
            ES K++AQ+MTIAALR++RQIA E+SGE+ YG GRQPAVLRTFSQRLSRGFNDAVNGF DDGWSLM+ DGAEDV IA NS+ +    S+  +S  F
Sbjct:  370 ESPKILAQKMTIAALRHIRQIAHESSGEMPYGGGRQPAVLRTFSQRLSRGFNDAVNGFPDDGWSLMSSDGAEDVTIAFNSSPNKLVGSHVNSSQLF 465          
BLAST of CF510030 vs. ExPASy Swiss-Prot
Match: HOX32_ORYSI (Homeobox-leucine zipper protein HOX32 OS=Oryza sativa subsp. indica GN=HOX32 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.888e-31
Identity = 67/96 (69.79%), Postives = 79/96 (82.29%), Query Frame = 1
Query:    1 ESSKVVAQRMTIAALRYVRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAF 288
            ES K++AQ+MTIAALR++RQIA E+SGE+ YG GRQPAVLRTFSQRLSRGFNDAVNGF DDGWSLM+ DGAEDV IA NS+ +    S+  +S  F
Sbjct:  370 ESPKILAQKMTIAALRHIRQIAHESSGEMPYGGGRQPAVLRTFSQRLSRGFNDAVNGFPDDGWSLMSSDGAEDVTIAFNSSPNKLVGSHVNSSQLF 465          
BLAST of CF510030 vs. ExPASy Swiss-Prot
Match: ATB14_ARATH (Homeobox-leucine zipper protein ATHB-14 OS=Arabidopsis thaliana GN=ATHB-14 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.578e-30
Identity = 66/93 (70.97%), Postives = 74/93 (79.57%), Query Frame = 1
Query:    1 ESSKVVAQRMTIAALRYVRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNS 279
            ESSK++AQ+MT+AALR+VRQIAQETSGEV YG GRQPAVLRTFSQRL RGFNDAVNGF DDGWS M  DGAEDV + +N +      S   NS
Sbjct:  363 ESSKILAQKMTVAALRHVRQIAQETSGEVQYGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSPMGSDGAEDVTVMINLSPGKFGGSQYGNS 455          
BLAST of CF510030 vs. ExPASy Swiss-Prot
Match: ATBH9_ARATH (Homeobox-leucine zipper protein ATHB-9 OS=Arabidopsis thaliana GN=ATHB-9 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.634e-29
Identity = 62/83 (74.70%), Postives = 72/83 (86.75%), Query Frame = 1
Query:    1 ESSKVVAQRMTIAALRYVRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSLMTCDGAEDVIIAVNSTKS 249
            ESSK++AQ+MT+AALR+VRQIAQETSGEV Y  GRQPAVLRTFSQRL RGFNDAVNGF DDGWS M+ DG ED+ I +NS+ +
Sbjct:  359 ESSKILAQKMTVAALRHVRQIAQETSGEVQYSGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSPMSSDGGEDITIMINSSSA 441          
BLAST of CF510030 vs. ExPASy Swiss-Prot
Match: HOX33_ORYSJ (Homeobox-leucine zipper protein HOX33 OS=Oryza sativa subsp. japonica GN=HOX33 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.134e-29
Identity = 60/89 (67.42%), Postives = 76/89 (85.39%), Query Frame = 1
Query:    1 ESSKVVAQRMTIAALRYVRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSLMTCDGAEDVIIAVNSTKSLSTASN 267
            ES K++AQ+MTIAALR++RQIA E+SGE+ YG GRQPAV RTFSQRLSRGFNDAV+GF DDGWSL++ DG+ED+ I+VNS+ +    S+
Sbjct:  367 ESPKILAQKMTIAALRHIRQIAHESSGEIPYGAGRQPAVFRTFSQRLSRGFNDAVSGFPDDGWSLLSSDGSEDITISVNSSPNKLVGSH 455          
The following BLAST results are available for this feature:
BLAST of CF510030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
REV_ARATH1.248e-3779.17Homeobox-leucine zipper protein REVOLUTA OS=Arabid... [more]
HOX10_ORYSJ2.203e-3478.65Homeobox-leucine zipper protein HOX10 OS=Oryza sat... [more]
HOX10_ORYSI2.203e-3478.65Homeobox-leucine zipper protein HOX10 OS=Oryza sat... [more]
HOX9_ORYSJ1.209e-3276.40Homeobox-leucine zipper protein HOX9 OS=Oryza sati... [more]
HOX9_ORYSI1.209e-3276.40Homeobox-leucine zipper protein HOX9 OS=Oryza sati... [more]
HOX32_ORYSJ3.888e-3169.79Homeobox-leucine zipper protein HOX32 OS=Oryza sat... [more]
HOX32_ORYSI3.888e-3169.79Homeobox-leucine zipper protein HOX32 OS=Oryza sat... [more]
ATB14_ARATH9.578e-3070.97Homeobox-leucine zipper protein ATHB-14 OS=Arabido... [more]
ATBH9_ARATH1.634e-2974.70Homeobox-leucine zipper protein ATHB-9 OS=Arabidop... [more]
HOX33_ORYSJ2.134e-2967.42Homeobox-leucine zipper protein HOX33 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-545 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_C07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510030 ID=CF510030; Name=CF510030; organism=Citrus sinensis; type=EST; length=290bp
GAATCATCAAAAGTAGTGGCTCAGAGAATGACTATTGCGGCGCTGCGTTA
TGTAAGGCAAATAGCTCAGGAGACAAGTGGCGAGGTAGTATATGGGCTGG
GCAGGCAGCCGGCTGTTCTCAGAACTTTTAGCCAAAGACTAAGCAGAGGC
TTCAATGATGCTGTCAATGGGTTTAATGATGATGGTTGGTCGTTGATGAC
CTGTGATGGTGCTGAAGATGTGATAATTGCAGTTAATTCAACTAAGAGTT
TGAGCACTGCCTCTAATCCTACTAATTCCCTTGCATTCCT
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