CF510037

Overview
NameCF510037
Unique NameCF510037
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig219 contig Csv1_Contig219:224..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF510037 vs. ExPASy Swiss-Prot
Match: SSG1_SOLTU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum GN=WAXY PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.512e-33
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 3 
Query:  405 GGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHK 560
            GGLPPALAA GHRVMTI+PRYDQYKDAWDT V +E+KVGD IE VRFFHC+K
Sbjct:  104 GGLPPALAARGHRVMTISPRYDQYKDAWDTSVAVEVKVGDSIEIVRFFHCYK 155

HSP 2 Score: 63.5438 bits (153), Expect = 2.512e-33
Identity = 34/66 (51.52%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:  196 GLRSLNIIDELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTGGLG 393
            GLR++N +D LQ +T      T + A R   + + G S  IVCG G+N++FVGTEV PWSKTGGLG
Sbjct:   38 GLRAVNKLDGLQSRTNTK--VTPKMASRTETK-RPGCSATIVCGKGMNLIFVGTEVGPWSKTGGLG 100
[Close]
BLAST of CF510037 vs. ExPASy Swiss-Prot
Match: SSG1_ANTMA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Antirrhinum majus GN=WAXY PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.271e-33
Identity = 42/52 (80.77%), Postives = 48/52 (92.31%), Query Frame = 3 
Query:  405 GGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHK 560
            GGLPPA+A NGHRVMT++PRYDQYKDAWDT VV+E+KVGD IE VRFFHC+K
Sbjct:  105 GGLPPAMAGNGHRVMTVSPRYDQYKDAWDTSVVVEIKVGDSIETVRFFHCYK 156

HSP 2 Score: 60.8474 bits (146), Expect = 3.271e-33
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:  196 GLRSLNIIDELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTGGLG 393
            GLRS+N++D+LQ++  A +  +  +   NG      P   I+CG G+N++FV  EV PWSKTGGLG
Sbjct:   41 GLRSINMVDKLQMRNNAKQSRSLVKKTDNG-----SPLGKIICGTGMNLVFVLAEVGPWSKTGGLG 101
[Close]
BLAST of CF510037 vs. ExPASy Swiss-Prot
Match: SSG1_SORBI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Sorghum bicolor GN=WAXY PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.380e-31
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 3 
Query:  405 GGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHK 560
            GGLPPA+AANGHRVM ++PRYDQYKDAWDT VV E+K+GD  E VRFFHC+K
Sbjct:  105 GGLPPAMAANGHRVMVVSPRYDQYKDAWDTSVVSEIKMGDGYETVRFFHCYK 156

HSP 2 Score: 58.9214 bits (141), Expect = 8.380e-31
Identity = 27/58 (46.55%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:  220 DELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTGGLG 393
            D L ++T A      + A R G R    PSL++    G+N++FVG E+APWSKTGGLG
Sbjct:   44 DALSMRTSACPAPRQQPAARRGGRGGRFPSLVVCATAGMNVVFVGAEMAPWSKTGGLG 101
[Close]
BLAST of CF510037 vs. ExPASy Swiss-Prot
Match: SSG1_MAIZE (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Zea mays GN=WAXY PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.409e-30
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 3 
Query:  405 GGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHK 560
            GGLPPA+AANGHRVM ++PRYDQYKDAWDT VV E+K+GD  E VRFFHC+K
Sbjct:  100 GGLPPAMAANGHRVMVVSPRYDQYKDAWDTSVVSEIKMGDGYETVRFFHCYK 151

HSP 2 Score: 57.3806 bits (137), Expect = 2.409e-30
Identity = 29/66 (43.94%), Postives = 39/66 (59.09%), Query Frame = 1 
Query:  196 GLRSLNIIDELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTGGLG 393
            G R+    D L ++T A      +Q  R G R    PSL++    G+N++FVG E+APWSKTGGLG
Sbjct:   34 GARASAAADTLSMRTSARAAPRHQQQARRGGRF---PSLVVCASAGMNVVFVGAEMAPWSKTGGLG 96
[Close]
BLAST of CF510037 vs. ExPASy Swiss-Prot
Match: SSG1_IPOBA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Ipomoea batatas GN=WAXY PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.174e-29
Identity = 42/52 (80.77%), Postives = 47/52 (90.38%), Query Frame = 3 
Query:  405 GGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHK 560
            GGLPPALAA GHRVMT+ PRYDQYKDAWDT VV+EL+VGD+IE VRFFH +K
Sbjct:  105 GGLPPALAARGHRVMTVCPRYDQYKDAWDTCVVVELQVGDRIEPVRFFHSYK 156

HSP 2 Score: 54.299 bits (129), Expect = 1.174e-29
Identity = 32/68 (47.06%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:  196 GLRSLNIIDELQVKTMASKLATSRQAGRNGFRSQNGPSL-MIVCGV-GLNILFVGTEVAPWSKTGGLG 393
            GLR +N ID LQ++T A K        +NG  ++ G +   IVC   G+N++FVG EV PW KTGGLG
Sbjct:   40 GLRPVNKIDMLQLRTSAKK------PSKNGRENEGGMAAGTIVCKQQGMNLVFVGCEVGPWCKTGGLG 101
[Close]
BLAST of CF510037 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSJ (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=WAXY PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.642e-28
Identity = 41/52 (78.85%), Postives = 47/52 (90.38%), Query Frame = 3 
Query:  405 GGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHK 560
            GGLPPA+AANGHRVM I+PRYDQYKDAWDT VV E+KV D+ E+VRFFHC+K
Sbjct:  106 GGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYK 157

HSP 2 Score: 48.9062 bits (115), Expect = 1.642e-28
Identity = 25/59 (42.37%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:  220 DELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVC-GVGLNILFVGTEVAPWSKTGGLG 393
            D   +    S  AT +Q       S+  PS+++   G G+N++FVG E+APWSKTGGLG
Sbjct:   44 DATSLSVTTSARATPKQQRSVQRGSRRFPSVVVYATGAGMNVVFVGAEMAPWSKTGGLG 102
[Close]
BLAST of CF510037 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=WAXY PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.642e-28
Identity = 41/52 (78.85%), Postives = 47/52 (90.38%), Query Frame = 3 
Query:  405 GGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHK 560
            GGLPPA+AANGHRVM I+PRYDQYKDAWDT VV E+KV D+ E+VRFFHC+K
Sbjct:  106 GGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYK 157

HSP 2 Score: 48.9062 bits (115), Expect = 1.642e-28
Identity = 25/59 (42.37%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:  220 DELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVC-GVGLNILFVGTEVAPWSKTGGLG 393
            D   +    S  AT +Q       S+  PS+++   G G+N++FVG E+APWSKTGGLG
Sbjct:   44 DATSLSVTTSARATPKQQRSVQRGSRRFPSVVVYATGAGMNVVFVGAEMAPWSKTGGLG 102
[Close]
BLAST of CF510037 vs. ExPASy Swiss-Prot
Match: SSG1_ORYGL (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza glaberrima GN=WAXY PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.642e-28
Identity = 41/52 (78.85%), Postives = 47/52 (90.38%), Query Frame = 3 
Query:  405 GGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHK 560
            GGLPPA+AANGHRVM I+PRYDQYKDAWDT VV E+KV D+ E+VRFFHC+K
Sbjct:  106 GGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYK 157

HSP 2 Score: 48.9062 bits (115), Expect = 1.642e-28
Identity = 25/59 (42.37%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:  220 DELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVC-GVGLNILFVGTEVAPWSKTGGLG 393
            D   +    S  AT +Q       S+  PS+++   G G+N++FVG E+APWSKTGGLG
Sbjct:   44 DATSLSVTTSARATPKQQRSVQRGSRRFPSVVVYATGAGMNVVFVGAEMAPWSKTGGLG 102
[Close]
BLAST of CF510037 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa GN=WAXY PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.138e-28
Identity = 41/52 (78.85%), Postives = 47/52 (90.38%), Query Frame = 3 
Query:  405 GGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHK 560
            GGLPPA+AANGHRVM I+PRYDQYKDAWDT VV E+KV D+ E+VRFFHC+K
Sbjct:  106 GGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYK 157

HSP 2 Score: 48.521 bits (114), Expect = 2.138e-28
Identity = 25/59 (42.37%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:  220 DELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVC-GVGLNILFVGTEVAPWSKTGGLG 393
            D   +    S  AT +Q       S+  PS+++   G G+N++FVG E+APWSKTGGLG
Sbjct:   44 DASSLSVTTSARATPKQQRSVQRGSRRFPSVVVYATGAGMNVVFVGAEMAPWSKTGGLG 102
[Close]
BLAST of CF510037 vs. ExPASy Swiss-Prot
Match: SSG1_PEA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.784e-28
Identity = 42/52 (80.77%), Postives = 49/52 (94.23%), Query Frame = 3 
Query:  405 GGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHK 560
            GGLPP LA NGHRVMT++PRYDQYKDAWDT+V++E+KVGDKIE VRFFHC+K
Sbjct:  100 GGLPPVLAGNGHRVMTVSPRYDQYKDAWDTNVLVEVKVGDKIETVRFFHCYK 151

HSP 2 Score: 44.2838 bits (103), Expect = 2.784e-28
Identity = 29/67 (43.28%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:  193 VGLRSLNIIDELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTGGLG 393
            +GLRSLN   +L V+T  +   +S  + ++  +        IVCG+ L  +FVG EV PWSKTGGLG
Sbjct:   43 LGLRSLN---KLHVRTARATSGSSDTSEKSLGK--------IVCGMSL--VFVGAEVGPWSKTGGLG 96
The following BLAST results are available for this feature:
BLAST of CF510037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
SSG1_SOLTU2.512e-3382.69Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ANTMA3.271e-3380.77Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_SORBI8.380e-3176.92Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_MAIZE2.409e-3076.92Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_IPOBA1.174e-2980.77Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYSJ1.642e-2878.85Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYSI1.642e-2878.85Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYGL1.642e-2878.85Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYSA2.138e-2878.85Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_PEA2.784e-2880.77Granule-bound starch synthase 1, chloroplastic/amy... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-552 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510037 ID=CF510037; Name=CF510037; organism=Citrus sinensis; type=EST; length=560bp
CGCTTGAGCACCAGATTTCATCAGGAAACTAAGAGGGAAACAAATCTTCA
GCAGAGACTACAAACATAATAATATCAGCTATGGCTACCGCTGTAGCCGC
TTCAAGCTTCGTCTCAAGGAGTTATGGACATGAGGTAGCTTCAGGATTGA
ATAGTAAGGCATCACAGATGAAATTTAGGTGTATGAAGCACAGTGGGCCT
GAGAAGTTTAAATATCATAGACGAACTCCAAGTGAAAACAATGGCATCAA
AACTAGCCACCAGCAGGCAAGCTGGGAGGAATGGATTTAGAAGCCAGAAC
GGGCCATCCTTAATGATTGTTTGTGGGGTTGGCCTGAATATCCTCTTTGT
TGGAACAGAGGTTGCTCCTTGGAGTAAAACTGGGGGACTTGGGTGATGTT
CTTTGGAGGTCTGCCACCAGCACTGGCCGCCAATGGGCACCGTGTCATGA
CGATTGCACCCCGATATGACCAGTACAAAGATGCTTGGGATACTGATGTT
GTAATTGAGCTGAAAGTTGGAGACAAAATTGAAAAAGTTCGCTTCTTTCA
TTGCCACAAG
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