CF510039

Overview
NameCF510039
Unique NameCF510039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length345
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig940 contig Csv1_Contig940:1..345. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510039 vs. ExPASy Swiss-Prot
Match: PERA2_ARMRU (Peroxidase A2 OS=Armoracia rusticana GN=HRPA2 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.085e-25
Identity = 53/77 (68.83%), Postives = 61/77 (79.22%), Query Frame = 1
Query:  112 QLSPSFYSSTCPNVLNIIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGF 342
            QL+ +FYS TCPN   I+   +++AF SD RIGASLIRLHFHDCFVDGCDASILLD + +I SEK A PN NSARGF
Sbjct:    1 QLNATFYSGTCPNASAIVRSTIQQAFQSDTRIGASLIRLHFHDCFVDGCDASILLDDSGSIQSEKNAGPNANSARGF 77          
BLAST of CF510039 vs. ExPASy Swiss-Prot
Match: PER53_ARATH (Peroxidase 53 OS=Arabidopsis thaliana GN=PER53 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.085e-25
Identity = 54/80 (67.50%), Postives = 62/80 (77.50%), Query Frame = 1
Query:  103 SQAQLSPSFYSSTCPNVLNIIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGF 342
            S AQL+ +FYS TCPN   I+   +++A  SD RIGASLIRLHFHDCFV+GCDASILLD T +I SEK A PN NSARGF
Sbjct:   28 SSAQLNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGSIQSEKNAGPNVNSARGF 107          
BLAST of CF510039 vs. ExPASy Swiss-Prot
Match: PER32_ARATH (Peroxidase 32 OS=Arabidopsis thaliana GN=PER32 PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 4.454e-24
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 1
Query:   97 SPSQAQLSPSFYSSTCPNVLNIIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGF 342
            S S AQL+P+FY +TCP+V  I+ D +     SD RI AS++RLHFHDCFV+GCDASILLD+T +  +EK AAPN NSARGF
Sbjct:   25 SISSAQLTPTFYDNTCPSVFTIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAAPNANSARGF 106          
BLAST of CF510039 vs. ExPASy Swiss-Prot
Match: PER15_IPOBA (Peroxidase 15 OS=Ipomoea batatas GN=pod PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.818e-24
Identity = 54/84 (64.29%), Postives = 64/84 (76.19%), Query Frame = 1
Query:   97 SPSQAQLSPSFYSSTCPNVLNIIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDST-NTIDSEKFAAPNNNSARGFE 345
            S S AQLS +FYS+TCPNV  I+  V+++A  +D RIG SLIRLHFHDCFVDGCD S+LLD+   TI SEK A PN NS RGF+
Sbjct:   19 SHSNAQLSSTFYSTTCPNVSAIVRTVVQQALQNDARIGGSLIRLHFHDCFVDGCDGSLLLDNNGTTIVSEKDALPNTNSTRGFD 102          
BLAST of CF510039 vs. ExPASy Swiss-Prot
Match: PERX_NICSY (Lignin-forming anionic peroxidase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.693e-23
Identity = 52/78 (66.67%), Postives = 61/78 (78.21%), Query Frame = 1
Query:  109 AQLSPSFYSSTCPNVLNIIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGF 342
            AQLS +FY +TCPN LN I   +++A SS+ R+ ASLIRLHFHDCFV GCDASILLD T +I+SEK A PN  SARGF
Sbjct:   27 AQLSATFYDNTCPNALNTIRTSVRQAISSERRMAASLIRLHFHDCFVQGCDASILLDETPSIESEKTALPNLGSARGF 104          
BLAST of CF510039 vs. ExPASy Swiss-Prot
Match: PERN_ARMRU (Peroxidase N OS=Armoracia rusticana GN=HRPN PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.693e-23
Identity = 52/83 (62.65%), Postives = 63/83 (75.90%), Query Frame = 1
Query:   97 SPSQAQLSPSFYSSTCPNVLNIIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFE 345
            S  +AQLSP  Y+ +CPN+L I+ D +K A  ++IR+ ASLIRLHFHDCFV+GCDAS+LLD TN   SEK A PN NS RGFE
Sbjct:   24 SAVRAQLSPDIYAKSCPNLLQIVRDQVKIALKAEIRMAASLIRLHFHDCFVNGCDASVLLDGTN---SEKLAIPNVNSVRGFE 103          
BLAST of CF510039 vs. ExPASy Swiss-Prot
Match: PER3_ARMRU (Peroxidase C3 OS=Armoracia rusticana GN=PRXC3 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.693e-23
Identity = 52/84 (61.90%), Postives = 62/84 (73.81%), Query Frame = 1
Query:   91 EGSPSQAQLSPSFYSSTCPNVLNIIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGF 342
            + S S AQL P FY  TCP+V NII D++     +D RI ASL+RLHFHDCFV GCDASILLD++ +  +EK AAPN NSARGF
Sbjct:   23 QASNSNAQLRPDFYFRTCPSVFNIIGDIIVDELRTDPRIAASLLRLHFHDCFVRGCDASILLDNSTSFRTEKDAAPNANSARGF 106          
BLAST of CF510039 vs. ExPASy Swiss-Prot
Match: PER38_ARATH (Peroxidase 38 OS=Arabidopsis thaliana GN=PER38 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.925e-23
Identity = 51/83 (61.45%), Postives = 62/83 (74.70%), Query Frame = 1
Query:   97 SPSQAQLSPSFYSSTCPNVLNIIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFE 345
            S S AQLSPSFY  TCP V +I+ + +  A  SD RI AS++RLHFHDCFV+GCDASILLD+T +  +EK A  N NSARGF+
Sbjct:   18 SLSHAQLSPSFYDKTCPQVFDIVTNTIVNALRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFD 100          
BLAST of CF510039 vs. ExPASy Swiss-Prot
Match: PER1A_ARMRU (Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 6.432e-23
Identity = 50/82 (60.98%), Postives = 62/82 (75.61%), Query Frame = 1
Query:   97 SPSQAQLSPSFYSSTCPNVLNIIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGF 342
            S S AQL+P+FY ++CPNV NI+ D +     SD RI AS++RLHFHDCFV+GCDASILLD+T +  +EK A  N NSARGF
Sbjct:   26 SLSDAQLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGF 107          
BLAST of CF510039 vs. ExPASy Swiss-Prot
Match: PER54_ARATH (Peroxidase 54 OS=Arabidopsis thaliana GN=PER54 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.401e-23
Identity = 49/80 (61.25%), Postives = 59/80 (73.75%), Query Frame = 1
Query:  103 SQAQLSPSFYSSTCPNVLNIIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGF 342
            S AQL+ +FYS TCPN   I+   +++A  SD RIG SLIRLHFHDCFV+GCD S+LLD T++I SEK A  N NS RGF
Sbjct:   29 SSAQLNATFYSGTCPNASAIVRSTIQQALQSDARIGGSLIRLHFHDCFVNGCDGSLLLDDTSSIQSEKNAPANANSTRGF 108          
The following BLAST results are available for this feature:
BLAST of CF510039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
PERA2_ARMRU3.085e-2568.83Peroxidase A2 OS=Armoracia rusticana GN=HRPA2 PE=1... [more]
PER53_ARATH3.085e-2567.50Peroxidase 53 OS=Arabidopsis thaliana GN=PER53 PE=... [more]
PER32_ARATH4.454e-2462.20Peroxidase 32 OS=Arabidopsis thaliana GN=PER32 PE=... [more]
PER15_IPOBA5.818e-2464.29Peroxidase 15 OS=Ipomoea batatas GN=pod PE=1 SV=1[more]
PERX_NICSY1.693e-2366.67Lignin-forming anionic peroxidase OS=Nicotiana syl... [more]
PERN_ARMRU1.693e-2362.65Peroxidase N OS=Armoracia rusticana GN=HRPN PE=2 S... [more]
PER3_ARMRU1.693e-2361.90Peroxidase C3 OS=Armoracia rusticana GN=PRXC3 PE=3... [more]
PER38_ARATH4.925e-2361.45Peroxidase 38 OS=Arabidopsis thaliana GN=PER38 PE=... [more]
PER1A_ARMRU6.432e-2360.98Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE... [more]
PER54_ARATH8.401e-2361.25Peroxidase 54 OS=Arabidopsis thaliana GN=PER54 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-554 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510039 ID=CF510039; Name=CF510039; organism=Citrus sinensis; type=EST; length=345bp
ATTCTCTTCATAGAGAAGTAGTAACTCTTAGCCAAAATGGCTTCACTTCG
TTATCTTCTTGCAGCAGCTCTTGTTGTTGCTTTTGTGCTTGAGGGATCAC
CATCTCAAGCTCAACTTTCTCCATCTTTTTATTCTTCCACATGCCCTAAT
GTATTGAACATTATCGAGGATGTGCTTAAGAAAGCGTTCTCGTCCGATAT
CCGGATCGGTGCCAGCCTCATCAGGCTTCATTTCCATGACTGTTTTGTTG
ATGGGTGTGATGCTTCGATTTTGCTGGACAGCACTAACACCATAGACAGC
GAGAAATTTGCTGCGCCAAATAATAATTCGGCGAGGGGTTTTGAA
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