CF510050

Overview
NameCF510050
Unique NameCF510050
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length359
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF510050_ssr14 microsatellite CF510050_ssr14:14..28. BLAST: Citrus ESTs to Prunus persica proteins V1
CF510050_ssr97 microsatellite CF510050_ssr97:97..111. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF510050 vs. ExPASy Swiss-Prot
Match: PRF1_SOLLC (36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.946e-16
Identity = 43/73 (58.90%), Postives = 52/73 (71.23%), Query Frame = 2 
Query:  140 QQTCPINALKLGACXXXXXXXXXXXXXXXAKEKCCPLLYGLVDLDAAICLCTAIKIKGLSLIDILVPISLQVL 358
            Q TCPI+ALKLGAC               AK+ CCPLL GLVDLDAAICLCT I++K L+ I+I++PI+LQVL
Sbjct:  258 QPTCPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLN-INIILPIALQVL 329
The following BLAST results are available for this feature:
BLAST of CF510050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PRF1_SOLLC5.946e-1658.9036.4 kDa proline-rich protein OS=Solanum lycopersi... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-565 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510050 ID=CF510050; Name=CF510050; organism=Citrus sinensis; type=EST; length=359bp
GCCAAAGGTGAAACCTCCTCCTCCTCCTCCAGTTGTAAAATCACCGCCGC
CACCACCGCCAAAGGTGAAACCTCCTCCTCCCTCTCCAGTTGTAAAACCA
CCACCACCACCAAATGTGGGATACCCACTGCTACGAACACAACAAACTTG
TCCAATTAATGCTCTCAAGCTTGGTGCATGCGTCGATGTTCTCGGTGGTT
TAATTCACATTGGTCTTGGCGACGGTGCTAAGGAGAAATGCTGCCCATTG
CTTTATGGACTAGTTGACTTGGATGCTGCAATATGTCTTTGCACTGCCAT
TAAAATTAAGGGTCTGAGTCTCATCGATATTCTCGTACCCATCTCTTTGC
AAGTACTTG
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