CF510052

Overview
NameCF510052
Unique NameCF510052
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length179
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9870 contig Csv1_Contig9870:1368..1546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510052 vs. ExPASy Swiss-Prot
Match: SPE1_SOYBN (Arginine decarboxylase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.819e-17
Identity = 38/48 (79.17%), Postives = 44/48 (91.67%), Query Frame = 1
Query:    1 GPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHGS 144
            GPHSFAVTRA+PGPSCGDVLRVMQH+PELMFETLKHRA+EY   ++ +
Sbjct:  601 GPHSFAVTRAVPGPSCGDVLRVMQHQPELMFETLKHRAQEYVSHDNAA 648          
BLAST of CF510052 vs. ExPASy Swiss-Prot
Match: SPE1_PEA (Arginine decarboxylase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.224e-15
Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = 1
Query:    1 GPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQ 132
            GPH FAVTRA+ G SC DVLRVMQHEP+LMFETLKHRA E+CGQ
Sbjct:  614 GPHGFAVTRAVAGSSCADVLRVMQHEPQLMFETLKHRALEFCGQ 657          
BLAST of CF510052 vs. ExPASy Swiss-Prot
Match: SPE2_ARATH (Arginine decarboxylase 2 OS=Arabidopsis thaliana GN=SPE2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.452e-15
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 1
Query:    1 GPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHGSNGGDGDTDD 171
            GPHSFAVTRA+PG S  DVLR MQHEPELMF+TLKHRAEE    + GS G + + ++
Sbjct:  601 GPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHRAEEMMHTKGGSEGENEEEEE 657          
BLAST of CF510052 vs. ExPASy Swiss-Prot
Match: SPE1_DIACA (Arginine decarboxylase OS=Dianthus caryophyllus GN=ADC PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.057e-13
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 1
Query:    1 GPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEE 120
            GP S+AVTRA+PGPS  DVLRVM HEPELMF+TLKHRAEE
Sbjct:  610 GPQSYAVTRAVPGPSSSDVLRVMHHEPELMFQTLKHRAEE 649          
BLAST of CF510052 vs. ExPASy Swiss-Prot
Match: SPE1_BRAJU (Arginine decarboxylase OS=Brassica juncea GN=ADC1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.302e-12
Identity = 33/40 (82.50%), Postives = 34/40 (85.00%), Query Frame = 1
Query:    1 GPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEE 120
            GPH FAVTRAM G S  DVLR MQHEPELMF+TLKHRAEE
Sbjct:  590 GPHGFAVTRAMMGQSSADVLRAMQHEPELMFQTLKHRAEE 629          
BLAST of CF510052 vs. ExPASy Swiss-Prot
Match: SPE1_ARATH (Arginine decarboxylase 1 OS=Arabidopsis thaliana GN=SPE1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.926e-12
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 1
Query:    1 GPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHGSNGGDGD 162
            GPH FAVTRA+ G S  DVLR MQHEPELMF+TLKHRAEE     + + G  G+
Sbjct:  589 GPHGFAVTRAVMGQSSADVLRAMQHEPELMFQTLKHRAEEPRNNNNKACGDKGN 642          
The following BLAST results are available for this feature:
BLAST of CF510052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
SPE1_SOYBN1.819e-1779.17Arginine decarboxylase OS=Glycine max PE=2 SV=1[more]
SPE1_PEA2.224e-1581.82Arginine decarboxylase OS=Pisum sativum PE=2 SV=1[more]
SPE2_ARATH8.452e-1564.91Arginine decarboxylase 2 OS=Arabidopsis thaliana G... [more]
SPE1_DIACA6.057e-1382.50Arginine decarboxylase OS=Dianthus caryophyllus GN... [more]
SPE1_BRAJU2.302e-1282.50Arginine decarboxylase OS=Brassica juncea GN=ADC1 ... [more]
SPE1_ARATH3.926e-1262.96Arginine decarboxylase 1 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-567 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510052 ID=CF510052; Name=CF510052; organism=Citrus sinensis; type=EST; length=179bp
GGTCCGCACAGCTTTGCTGTGACTCGGGCCATGCCTGGGCCGTCTTGTGG
GGATGTCCTCCGGGTGATGCAGCACGAGCCCGAGCTCATGTTTGAGACCC
TCAAACACCGTGCTGAGGAATATTGTGGACAGGAGCATGGTAGTAATGGT
GGGGATGGTGATACTGATGATTACTATCA
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