CF510060

Overview
NameCF510060
Unique NameCF510060
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7937 contig Csv1_Contig7937:23..485. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF510060 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.032e-12
Identity = 34/98 (34.69%), Postives = 58/98 (59.18%), Query Frame = 3 
Query:  147 FIRTSCNSTLYPEICYSTLSRYASTIQQDPAQLASVAIGVTLSKAKRMANYVSNISRQADYGSDQRAAAALHDCFSNFGDAVEEIYGSLKQMRQIKSA 440
            FI+TSC  T YP +C  +LS YA TIQ +P +LAS A+ V+L++ ++   ++  +++    G   R  AA+HDC     D+++ +  S  +M+ +  A
Sbjct:   28 FIKTSCTLTTYPAVCEQSLSAYAKTIQNNPQELASTALQVSLTRTQQAQTFMKRLNKFK--GLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHA 123
The following BLAST results are available for this feature:
BLAST of CF510060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
21KD_DAUCA1.032e-1234.6921 kDa protein OS=Daucus carota PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-575 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510060 ID=CF510060; Name=CF510060; organism=Citrus sinensis; type=EST; length=463bp
CACAAACCCAAACAACCATGAAATCCCCACGTCCTCTAATTCTTCTCTCA
TTCCTCTTTTCAACTTTCTTCCTCCAGCTTCATGCAATCCCCGCCGCAGC
CCCTGCAAGCTATCCACCTGACACCGGTTCCGGCACCGGCACGGACTTCA
TCCGTACAAGTTGCAACTCAACATTGTACCCCGAAATATGCTACTCCACT
CTATCCCGCTACGCCAGCACCATCCAGCAGGACCCCGCTCAGCTTGCCAG
CGTAGCCATCGGCGTGACGCTATCCAAAGCCAAGCGCATGGCTAATTACG
TGTCCAACATCTCCCGCCAAGCCGACTACGGCTCCGACCAGCGAGCCGCA
GCCGCTTTGCACGACTGTTTCTCCAACTTTGGGGACGCAGTCGAGGAGAT
TTACGGCTCGCTCAAGCAGATGCGCCAGATTAAGTCGGCTGGGACTTCCC
GGGCCAGCTTTAG
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