CF510065 | Citrus Genome Database

Overview


Name	CF510065
Unique Name	CF510065
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	419

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig12573	contig	Csv1_Contig12573:17..434.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of CF510065 vs. ExPASy Swiss-Prot
Match: RAN_VICFA (GTP-binding nuclear protein Ran/TC4 OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 7.349e-65
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1

Query:  130 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 417
            GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct:   25 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

HSP 2 Score: 52.7582 bits (125), Expect = 7.349e-65
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 3

Query:   57 MALPNQQTVDYPSFKLVIVGDGGT 128
            MALPNQQTVDYPSFKLVIVGDGGT
Sbjct:    1 MALPNQQTVDYPSFKLVIVGDGGT 24

BLAST of CF510065 vs. ExPASy Swiss-Prot
Match: RANB1_TOBAC (GTP-binding nuclear protein Ran-B1 OS=Nicotiana tabacum GN=RAN-B1 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 7.349e-65
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1

Query:  130 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 417
            GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct:   25 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

HSP 2 Score: 52.7582 bits (125), Expect = 7.349e-65
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 3

Query:   57 MALPNQQTVDYPSFKLVIVGDGGT 128
            MALPNQQTVDYPSFKLVIVGDGGT
Sbjct:    1 MALPNQQTVDYPSFKLVIVGDGGT 24

BLAST of CF510065 vs. ExPASy Swiss-Prot
Match: RAN3_ARATH (GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 7.349e-65
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1

Query:  130 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 417
            GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct:   25 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

HSP 2 Score: 52.7582 bits (125), Expect = 7.349e-65
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 3

Query:   57 MALPNQQTVDYPSFKLVIVGDGGT 128
            MALPNQQTVDYPSFKLVIVGDGGT
Sbjct:    1 MALPNQQTVDYPSFKLVIVGDGGT 24

BLAST of CF510065 vs. ExPASy Swiss-Prot
Match: RAN2_SOLLC (GTP-binding nuclear protein Ran2 OS=Solanum lycopersicum GN=RAN2 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 7.349e-65
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1

Query:  130 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 417
            GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct:   25 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

HSP 2 Score: 52.7582 bits (125), Expect = 7.349e-65
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 3

Query:   57 MALPNQQTVDYPSFKLVIVGDGGT 128
            MALPNQQTVDYPSFKLVIVGDGGT
Sbjct:    1 MALPNQQTVDYPSFKLVIVGDGGT 24

BLAST of CF510065 vs. ExPASy Swiss-Prot
Match: RAN2_ARATH (GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana GN=RAN2 PE=1 SV=3)

HSP 1 Score: 214.542 bits (545), Expect = 7.349e-65
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1

Query:  130 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 417
            GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct:   25 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

HSP 2 Score: 52.7582 bits (125), Expect = 7.349e-65
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 3

Query:   57 MALPNQQTVDYPSFKLVIVGDGGT 128
            MALPNQQTVDYPSFKLVIVGDGGT
Sbjct:    1 MALPNQQTVDYPSFKLVIVGDGGT 24

BLAST of CF510065 vs. ExPASy Swiss-Prot
Match: RAN1_SOLLC (GTP-binding nuclear protein Ran1 OS=Solanum lycopersicum GN=RAN1 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 7.349e-65
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1

Query:  130 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 417
            GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct:   25 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

HSP 2 Score: 52.7582 bits (125), Expect = 7.349e-65
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 3

Query:   57 MALPNQQTVDYPSFKLVIVGDGGT 128
            MALPNQQTVDYPSFKLVIVGDGGT
Sbjct:    1 MALPNQQTVDYPSFKLVIVGDGGT 24

BLAST of CF510065 vs. ExPASy Swiss-Prot
Match: RAN1_ARATH (GTP-binding nuclear protein Ran-1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 7.349e-65
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1

Query:  130 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 417
            GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct:   25 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

HSP 2 Score: 52.7582 bits (125), Expect = 7.349e-65
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 3

Query:   57 MALPNQQTVDYPSFKLVIVGDGGT 128
            MALPNQQTVDYPSFKLVIVGDGGT
Sbjct:    1 MALPNQQTVDYPSFKLVIVGDGGT 24

BLAST of CF510065 vs. ExPASy Swiss-Prot
Match: RAN1_ORYSJ (GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. japonica GN=RAN1 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.629e-64
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 1

Query:  130 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 417
            GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT+RLTYKNVPTWHRDLCRVCENIPI
Sbjct:   25 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDLCRVCENIPI 120

HSP 2 Score: 52.7582 bits (125), Expect = 1.629e-64
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 3

Query:   57 MALPNQQTVDYPSFKLVIVGDGGT 128
            MALPNQQTVDYPSFKLVIVGDGGT
Sbjct:    1 MALPNQQTVDYPSFKLVIVGDGGT 24

BLAST of CF510065 vs. ExPASy Swiss-Prot
Match: RAN1_ORYSI (GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. indica GN=RAN1 PE=2 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.629e-64
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 1

Query:  130 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 417
            GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT+RLTYKNVPTWHRDLCRVCENIPI
Sbjct:   25 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDLCRVCENIPI 120

HSP 2 Score: 52.7582 bits (125), Expect = 1.629e-64
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 3

Query:   57 MALPNQQTVDYPSFKLVIVGDGGT 128
            MALPNQQTVDYPSFKLVIVGDGGT
Sbjct:    1 MALPNQQTVDYPSFKLVIVGDGGT 24

BLAST of CF510065 vs. ExPASy Swiss-Prot
Match: RANA1_TOBAC (GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum GN=RAN-A1 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 1.362e-63
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1

Query:  130 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 417
            GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct:   25 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

HSP 2 Score: 48.521 bits (114), Expect = 1.362e-63
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 3

Query:   57 MALPNQQTVDYPSFKLVIVGDGGT 128
            MALP QQ VDYPSFKLVIVGDGGT
Sbjct:    1 MALPGQQAVDYPSFKLVIVGDGGT 24

The following BLAST results are available for this feature:

BLAST of CF510065 vs. ExPASy Swiss-Prot

BLAST of CF510065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58


Match Name	E-value	Identity	Description
RAN_VICFA	7.349e-65	100.00	GTP-binding nuclear protein Ran/TC4 OS=Vicia faba ...	[more]
RANB1_TOBAC	7.349e-65	100.00	GTP-binding nuclear protein Ran-B1 OS=Nicotiana ta...	[more]
RAN3_ARATH	7.349e-65	100.00	GTP-binding nuclear protein Ran-3 OS=Arabidopsis t...	[more]
RAN2_SOLLC	7.349e-65	100.00	GTP-binding nuclear protein Ran2 OS=Solanum lycope...	[more]
RAN2_ARATH	7.349e-65	100.00	GTP-binding nuclear protein Ran-2 OS=Arabidopsis t...	[more]
RAN1_SOLLC	7.349e-65	100.00	GTP-binding nuclear protein Ran1 OS=Solanum lycope...	[more]
RAN1_ARATH	7.349e-65	100.00	GTP-binding nuclear protein Ran-1 OS=Arabidopsis t...	[more]
RAN1_ORYSJ	1.629e-64	98.96	GTP-binding nuclear protein Ran-1 OS=Oryza sativa ...	[more]
RAN1_ORYSI	1.629e-64	98.96	GTP-binding nuclear protein Ran-1 OS=Oryza sativa ...	[more]
RANA1_TOBAC	1.362e-63	100.00	GTP-binding nuclear protein Ran-A1 OS=Nicotiana ta...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_125000-580 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_F09 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF510065 ID=CF510065; Name=CF510065; organism=Citrus sinensis; type=EST; length=419bp
CCGACACTGAGCGCTCTCTCGCTTAAATTCAAAATCCAAACGCAACAAAT
CAACTCATGGCTCTGCCGAATCAGCAAACTGTTGATTATCCAAGCTTCAA
ACTTGTAATTGTCGGCGATGGTGGCACCTGGGAAGACTACCTTTGTGAAG
AGGCATCTTACTGGTGAATTCGAGAAGAAATATGAACCGACCATTGGTGT
GGAAGTTCATCCATTGGACTTCTTTACCAACTGTGGAAAAATACGATTCT
ATTGCTGGGACACTGCCGGACAAGAGAAGTTTGGTGGTCTTAGAGATGGA
TACTACATCCATGGGCAATGTGCTATCATCATGTTTGATGTTACTGCCCG
CTTGACGTATAAGAATGTTCCGACGTGGCACCGTGATCTCTGCAGGGTGT
GTGAAAACATCCCAATTGT