CF510067

Overview
NameCF510067
Unique NameCF510067
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length405
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF510067 vs. ExPASy Swiss-Prot
Match: RAGP2_ARATH (RAN GTPase-activating protein 2 OS=Arabidopsis thaliana GN=RANGAP2 PE=1 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 1.361e-52
Identity = 101/135 (74.81%), Postives = 118/135 (87.41%), Query Frame = 1 
Query:    1 EKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVIS 405
            E LRVL FHNNMTGDEGA AI++VVK SPLLE+FRCSSTR+GS+GG ALSEALE CTH++KLDLRDNMFG EAGV+LSK LS++  +TE+YLSYLNLED+G +AI NALK SA  +EVLE+AGNDITVEAA  I+
Sbjct:  270 ENLRVLHFHNNMTGDEGALAIAEVVKRSPLLENFRCSSTRVGSKGGIALSEALEHCTHMEKLDLRDNMFGTEAGVSLSKTLSSFKHMTELYLSYLNLEDEGAIAIVNALKESASPIEVLEMAGNDITVEAASAIA 404
[Close]
BLAST of CF510067 vs. ExPASy Swiss-Prot
Match: RAGP1_ARATH (RAN GTPase-activating protein 1 OS=Arabidopsis thaliana GN=RANGAP1 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 3.708e-50
Identity = 96/130 (73.85%), Postives = 113/130 (86.92%), Query Frame = 1 
Query:    1 EKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEA 390
            +K+RVLQFHNNMTGDEGA AI+++V+  P LEDFRCSSTRIGSEGG AL+EALE C+HLKKLDLRDNMFGVE G+AL+K LS    LTE+Y+SYLNLED+GT A++ AL  SAP LEVLELAGNDITV++
Sbjct:  265 DKIRVLQFHNNMTGDEGATAIAEIVRECPSLEDFRCSSTRIGSEGGVALAEALEHCSHLKKLDLRDNMFGVEGGIALAKTLSVLTHLTEIYMSYLNLEDEGTEALSEALLKSAPSLEVLELAGNDITVKS 394
The following BLAST results are available for this feature:
BLAST of CF510067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RAGP2_ARATH1.361e-5274.81RAN GTPase-activating protein 2 OS=Arabidopsis tha... [more]
RAGP1_ARATH3.708e-5073.85RAN GTPase-activating protein 1 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-582 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510067 ID=CF510067; Name=CF510067; organism=Citrus sinensis; type=EST; length=405bp
GAGAAGCTCAGAGTCCTTCAGTTTCATAATAACATGACTGGAGATGAAGG
GGCACAAGCTATCTCTGACGTTGTGAAGCACTCTCCTTTGTTGGAGGATT
TTCGGTGCTCGTCTACTAGGATAGGATCGGAAGGAGGAACTGCATTATCA
GAAGCACTTGAGTCTTGTACTCATTTGAAAAAGCTTGACCTGCGGGACAA
CATGTTTGGCGTAGAAGCTGGAGTTGCTCTGAGCAAAGCTCTTTCTAATT
ATGCAGATCTCACTGAGGTTTACCTCAGCTATCTCAACTTGGAAGATGAC
GGTACTGTTGCTATAACTAACGCTCTGAAGGGATCTGCTCCTTTACTTGA
AGTTCTGGAGCTGGCTGGAAATGACATTACTGTTGAAGCTGCTCCTGTTA
TATCT
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