CF510068

Overview
NameCF510068
Unique NameCF510068
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length536
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4673 contig Csv1_Contig4673:71..592. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510068 vs. ExPASy Swiss-Prot
Match: XAF1_HUMAN (XIAP-associated factor 1 OS=Homo sapiens GN=XAF1 PE=1 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.540e-12
Identity = 25/74 (33.78%), Postives = 38/74 (51.35%), Query Frame = 2
Query:    2 RNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGEKCPQRIVTCDFCEFPLPAVDLAEHQ 223
            R L  C  C + VP++  EEH    H  V C+ C ++M++  L  HK  +C +R V C FC+  +    L  H+
Sbjct:   29 RFLVLCPECEEPVPKETMEEHCKLEHQQVGCTMCQQSMQKSSLEFHKANECQERPVECKFCKLDMQLSKLELHE 102          

HSP 2 Score: 34.2686 bits (77), Expect = 1.540e-12
Identity = 18/63 (28.57%), Postives = 28/63 (44.44%), Query Frame = 3
Query:  324 CGNRTELCHLCNRYIRLRERYNHESRCTGVPENTVGSSRNVRAAESDQGAHRRPAPPPPNEFY 512
            CG+RTELC  C ++I  R    H   C    +  +G    + A E +   H      P N+++
Sbjct:  105 CGSRTELCQGCGQFIMHRMLAQHRDVCRS-EQAQLGKGERISAPEREIYCHYCNQMIPENKYF 166          
BLAST of CF510068 vs. ExPASy Swiss-Prot
Match: TRAD1_RAT (TRAF-type zinc finger domain-containing protein 1 OS=Rattus norvegicus GN=Trafd1 PE=2 SV=2)

HSP 1 Score: 53.5286 bits (127), Expect = 4.500e-11
Identity = 24/74 (32.43%), Postives = 37/74 (50.00%), Query Frame = 2
Query:    2 RNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGEKCPQRIVTCDFCEFPLPAVDLAEHQ 223
            RN+  C VC +  P+   + H    H  V C +C++ +E+  L  H   +CP R+  C  C+  L  V L EH+
Sbjct:   34 RNIGVCPVCKEPFPKSDMDIHVATEHCQVTC-KCNKKLEKRQLKQHVETECPLRLAVCQHCDLELSVVKLKEHE 106          

HSP 2 Score: 33.113 bits (74), Expect = 4.500e-11
Identity = 14/34 (41.18%), Postives = 19/34 (55.88%), Query Frame = 3
Query:  318 EVCGNRTELCHLCNRYIRLRERYNHESRCTGVPE 419
            + CG RTELC  C R + ++E   H + C  V E
Sbjct:  107 DYCGARTELCGSCGRNVLVKELQTHPAVCGRVEE 140          
BLAST of CF510068 vs. ExPASy Swiss-Prot
Match: TRAD1_MACFA (TRAF-type zinc finger domain-containing protein 1 OS=Macaca fascicularis GN=TRAFD1 PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 5.840e-11
Identity = 23/74 (31.08%), Postives = 39/74 (52.70%), Query Frame = 2
Query:    2 RNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGEKCPQRIVTCDFCEFPLPAVDLAEHQ 223
            RN+  C +C +  P+   E H    H  V C +C++ +E+ +L  H+  +CP R+  C  C+  L  + L EH+
Sbjct:   34 RNIGMCPICKEPFPKSDMETHMAAEHCQVTC-KCNKKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHE 106          

HSP 2 Score: 29.261 bits (64), Expect = 5.840e-11
Identity = 11/29 (37.93%), Postives = 16/29 (55.17%), Query Frame = 3
Query:  318 EVCGNRTELCHLCNRYIRLRERYNHESRC 404
            + CG RTELC  C R + +++   H   C
Sbjct:  107 DYCGARTELCGNCGRNVLVKDLKTHPEVC 135          
BLAST of CF510068 vs. ExPASy Swiss-Prot
Match: TRAD1_MOUSE (TRAF-type zinc finger domain-containing protein 1 OS=Mus musculus GN=Trafd1 PE=1 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 7.580e-11
Identity = 24/74 (32.43%), Postives = 37/74 (50.00%), Query Frame = 2
Query:    2 RNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGEKCPQRIVTCDFCEFPLPAVDLAEHQ 223
            RN+  C VC +  P+   + H    H  V C +C++ +E+  L  H   +CP R+  C  C+  L  V L EH+
Sbjct:   34 RNIGVCPVCKEPFPKSDMDIHMAAEHCQVTC-KCNKKLEKRQLKQHAETECPLRLAVCQHCDLELSVVKLKEHE 106          

HSP 2 Score: 32.3426 bits (72), Expect = 7.580e-11
Identity = 14/34 (41.18%), Postives = 18/34 (52.94%), Query Frame = 3
Query:  318 EVCGNRTELCHLCNRYIRLRERYNHESRCTGVPE 419
            + CG RTELC  C R + ++E   H   C  V E
Sbjct:  107 DYCGARTELCGSCGRNVLVKELKTHPEVCGRVEE 140          
The following BLAST results are available for this feature:
BLAST of CF510068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
XAF1_HUMAN1.540e-1233.78XIAP-associated factor 1 OS=Homo sapiens GN=XAF1 P... [more]
TRAD1_RAT4.500e-1132.43TRAF-type zinc finger domain-containing protein 1 ... [more]
TRAD1_MACFA5.840e-1131.08TRAF-type zinc finger domain-containing protein 1 ... [more]
TRAD1_MOUSE7.580e-1132.43TRAF-type zinc finger domain-containing protein 1 ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-583 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510068 ID=CF510068; Name=CF510068; organism=Citrus sinensis; type=EST; length=536bp
GCGGAATCTGGAACGATGTAAAGTATGTGGTGACATGGTTCCAAGGAAAT
ATGCTGAGGAGCACTTCTTAAATACCCATGCCCCGGTGGCCTGTTCACAG
TGCAGCGAGACAATGGAGCGTGAAATTTTAGCCATCCATAAAGGTGAAAA
GTGCCCGCAAAGGATTGTCACTTGCGACTTTTGTGAGTTTCCACTGCCTG
CAGTTGATCTGGCCGAGCATCAGGTGGCAATCGTCAATAATTTTGAAAAT
GGAAAGACAATAGCTGATGCCATATCTTCTTACTTGGGTGTGATGCTTTG
TTGCTTTGTTATTGTAGGAAGTCTGTGGGAATCGCACAGAACTTTGTCAT
CTGTGTAACAGATATATTAGGTTGCGAGAAAGATATAACCATGAAAGTAG
GTGCACAGGTGTCCCAGAAAACACTGTTGGATCTTCCAGGAATGTAAGGG
CAGCTGAAAGTGACCAAGGGGCTCACAGAAGGCCGGCACCCCCGCCGCCA
AACGAGTTTTATCGGAAACGATTTCTACTTACCATA
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