CF510070

Overview
NameCF510070
Unique NameCF510070
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF510070 vs. ExPASy Swiss-Prot
Match: RPC6_HUMAN (DNA-directed RNA polymerase III subunit RPC6 OS=Homo sapiens GN=POLR3F PE=1 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 5.066e-13
Identity = 29/112 (25.89%), Postives = 56/112 (50.00%), Query Frame = 3 
Query:  351 REVVNIHNKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAVVLDNQI 635
            + V ++    KK  M    +P + ++GGAWYS+   ++EF++V+  QC K +  K + A     +  I+R+ +F                KV+L+ + IE I+  ++ D ++
Sbjct:  137 KAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKV 248

HSP 2 Score: 41.5874 bits (96), Expect = 5.066e-13
Identity = 26/75 (34.67%), Postives = 44/75 (58.67%), Query Frame = 2 
Query:  131 LAKGSGMSKRKRPDSNAPSDSLTDH-ERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIK 352
            L   +G+  R +   NA     +D+ E+L+Y +I  +  + GIW+RD++   K NLP   + K +K+L++K LIK
Sbjct:   66 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIK 137
[Close]
BLAST of CF510070 vs. ExPASy Swiss-Prot
Match: RPC6_MOUSE (DNA-directed RNA polymerase III subunit RPC6 OS=Mus musculus GN=Polr3f PE=1 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 6.580e-13
Identity = 29/112 (25.89%), Postives = 56/112 (50.00%), Query Frame = 3 
Query:  351 REVVNIHNKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAVVLDNQI 635
            + V ++    KK  M    +P + ++GGAWYS+   ++EF++V+  QC K +  K + A     +  I+R+ +F                KV+L+ + IE I+  ++ D ++
Sbjct:  137 KAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPVIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKV 248

HSP 2 Score: 41.5874 bits (96), Expect = 6.580e-13
Identity = 26/75 (34.67%), Postives = 44/75 (58.67%), Query Frame = 2 
Query:  131 LAKGSGMSKRKRPDSNAPSDSLTDH-ERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIK 352
            L   +G+  R +   NA     +D+ E+L+Y +I  +  + GIW+RD++   K NLP   + K +K+L++K LIK
Sbjct:   66 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIK 137
[Close]
BLAST of CF510070 vs. ExPASy Swiss-Prot
Match: RPC6_BOVIN (DNA-directed RNA polymerase III subunit RPC6 OS=Bos taurus GN=POLR3F PE=2 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 6.580e-13
Identity = 29/112 (25.89%), Postives = 56/112 (50.00%), Query Frame = 3 
Query:  351 REVVNIHNKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAVVLDNQI 635
            + V ++    KK  M    +P + ++GGAWYS+   ++EF++V+  QC K +  K + A     +  I+R+ +F                KV+L+ + IE I+  ++ D ++
Sbjct:  137 KAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQNKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKV 248

HSP 2 Score: 41.5874 bits (96), Expect = 6.580e-13
Identity = 26/75 (34.67%), Postives = 44/75 (58.67%), Query Frame = 2 
Query:  131 LAKGSGMSKRKRPDSNAPSDSLTDH-ERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIK 352
            L   +G+  R +   NA     +D+ E+L+Y +I  +  + GIW+RD++   K NLP   + K +K+L++K LIK
Sbjct:   66 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIK 137
The following BLAST results are available for this feature:
BLAST of CF510070 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RPC6_HUMAN5.066e-1325.89DNA-directed RNA polymerase III subunit RPC6 OS=Ho... [more]
RPC6_MOUSE6.580e-1325.89DNA-directed RNA polymerase III subunit RPC6 OS=Mu... [more]
RPC6_BOVIN6.580e-1325.89DNA-directed RNA polymerase III subunit RPC6 OS=Bo... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-585 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510070 ID=CF510070; Name=CF510070; organism=Citrus sinensis; type=EST; length=638bp
CTAGCCACCGCTCCTTTAACAAAACCCTCTCTCGCTTCAGTTACAACTCT
TTGCGTCTGTGAATGGAATTAAGACACTGGTGCTTAGTGGATGAATGAAG
TATTCATTCACAGATCTCTATCTGCTTGGATTGGCCAAAGGATCAGGAAT
GAGTAAGAGGAAGCGGCCAGACTCGAATGCGCCTTCTGACTCGCTTACTG
ATCATGAGCGCCTCATCTATGATGTAATCAGGAGCAACAAACAAGATATG
GGTATATGGACACGAGATATGAAACGTGAATTAAAAGTTAACCTCCCTGA
TAATATTGTTACTAAATCTATCAAGTCACTCCAAAACAAGAGCTTGATCA
AGGGAGGTAGTTAATATCCACAACAAGGGCAAAAAACACTTAATGGCAGT
GGAGTTTGAGCCCTCAAAGGAAATCTCTGGTGGCGCGTGGTACTCTGAGG
GAAGCCTAGATACAGAATTCATAAAAGTTGTGAAATCTCAATGCCTAAAG
CAAATAATTAAGTTGAAGGTTGCTACTTTGGAGGGCATTTCAGATTCCAT
CAAAAGGAGTGGAGCTTTCAAAGTTGACTTGACGAAACAGCAGATTGAAG
AGATTGTGAGGGCTGTGGTTTTGGATAATCAGATTATG
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