CF510078

Overview
NameCF510078
Unique NameCF510078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length564
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5486 contig Csv1_Contig5486:1..542. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF510078 vs. ExPASy Swiss-Prot
Match: RL191_ARATH (60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 9.509e-72
Identity = 134/160 (83.75%), Postives = 143/160 (89.38%), Query Frame = 2 
Query:   83 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 562
            MVSLKLQKRL+ASV+KCG+GKVWLDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRAR+MK AK KGRHSGYGKRKGTREARLPTK+              KYRE+KKIDKHMYHDMYM+VKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE
Sbjct:    1 MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 160
[Close]
BLAST of CF510078 vs. ExPASy Swiss-Prot
Match: RL192_ARATH (60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 2.767e-71
Identity = 133/160 (83.12%), Postives = 141/160 (88.12%), Query Frame = 2 
Query:   83 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 562
            MVSLK+QKRL+ASV+KCG+GKVWLDPNE  +ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRAR + EAKRKGRHSGYGKRKGTREARLPTKI              KYRESKKID+HMYHDMYMKVKGNVFKNKRVLMESIHK KAEKAREKTL+DQFE
Sbjct:    1 MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFE 160
[Close]
BLAST of CF510078 vs. ExPASy Swiss-Prot
Match: RL193_ARATH (60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3)

HSP 1 Score: 264.233 bits (674), Expect = 3.059e-70
Identity = 132/160 (82.50%), Postives = 142/160 (88.75%), Query Frame = 2 
Query:   83 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 562
            MVSLKLQKRL++SVLKCG+ KVWLDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRAR++  AKRKGRHSGYGKRKGTREARLPTK+              KYRE+KKID+HMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE
Sbjct:    1 MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 160
[Close]
BLAST of CF510078 vs. ExPASy Swiss-Prot
Match: RL19_DROME (60S ribosomal protein L19 OS=Drosophila melanogaster GN=RpL19 PE=1 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 1.333e-57
Identity = 107/160 (66.88%), Postives = 125/160 (78.12%), Query Frame = 2 
Query:   83 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 562
            M SLKLQKRL+ASVL+CG+ KVWLDPNE+NEI+  NSRQNIRKL+KDG II+KP  +HSR R R+  EA+RKGRH G+GKRKGT  AR+PTK+              KYR+SKKID+H+YHD+YMK KGNVFKNKRVLME IHK KAEK R K L+DQ E
Sbjct:    1 MSSLKLQKRLAASVLRCGKKKVWLDPNEINEIANTNSRQNIRKLIKDGLIIKKPVVVHSRYRVRKNTEARRKGRHCGFGKRKGTANARMPTKLLWMQRQRVLRRLLKKYRDSKKIDRHLYHDLYMKCKGNVFKNKRVLMEYIHKKKAEKQRSKMLADQAE 160
[Close]
BLAST of CF510078 vs. ExPASy Swiss-Prot
Match: RL19_XENLA (60S ribosomal protein L19 OS=Xenopus laevis GN=rpl19 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.379e-54
Identity = 103/160 (64.38%), Postives = 123/160 (76.88%), Query Frame = 2 
Query:   83 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 562
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKLVKDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+              +YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ E
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKLSWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAE 160
[Close]
BLAST of CF510078 vs. ExPASy Swiss-Prot
Match: RL19_RAT (60S ribosomal protein L19 OS=Rattus norvegicus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.379e-54
Identity = 102/160 (63.75%), Postives = 123/160 (76.88%), Query Frame = 2 
Query:   83 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 562
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+              +YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ E
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAE 160
[Close]
BLAST of CF510078 vs. ExPASy Swiss-Prot
Match: RL19_PONAB (60S ribosomal protein L19 OS=Pongo abelii GN=RPL19 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.379e-54
Identity = 102/160 (63.75%), Postives = 123/160 (76.88%), Query Frame = 2 
Query:   83 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 562
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+              +YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ E
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAE 160
[Close]
BLAST of CF510078 vs. ExPASy Swiss-Prot
Match: RL19_MOUSE (60S ribosomal protein L19 OS=Mus musculus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.379e-54
Identity = 102/160 (63.75%), Postives = 123/160 (76.88%), Query Frame = 2 
Query:   83 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 562
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+              +YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ E
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAE 160
[Close]
BLAST of CF510078 vs. ExPASy Swiss-Prot
Match: RL19_MACFA (60S ribosomal protein L19 OS=Macaca fascicularis GN=RPL19 PE=2 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 1.379e-54
Identity = 102/160 (63.75%), Postives = 123/160 (76.88%), Query Frame = 2 
Query:   83 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 562
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+              +YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ E
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAE 160
[Close]
BLAST of CF510078 vs. ExPASy Swiss-Prot
Match: RL19_HUMAN (60S ribosomal protein L19 OS=Homo sapiens GN=RPL19 PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.379e-54
Identity = 102/160 (63.75%), Postives = 123/160 (76.88%), Query Frame = 2 
Query:   83 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 562
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+              +YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ E
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAE 160
The following BLAST results are available for this feature:
BLAST of CF510078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL191_ARATH9.509e-7283.7560S ribosomal protein L19-1 OS=Arabidopsis thalian... [more]
RL192_ARATH2.767e-7183.1360S ribosomal protein L19-2 OS=Arabidopsis thalian... [more]
RL193_ARATH3.059e-7082.5060S ribosomal protein L19-3 OS=Arabidopsis thalian... [more]
RL19_DROME1.333e-5766.8860S ribosomal protein L19 OS=Drosophila melanogast... [more]
RL19_XENLA1.379e-5464.3860S ribosomal protein L19 OS=Xenopus laevis GN=rpl... [more]
RL19_RAT1.379e-5463.7560S ribosomal protein L19 OS=Rattus norvegicus GN=... [more]
RL19_PONAB1.379e-5463.7560S ribosomal protein L19 OS=Pongo abelii GN=RPL19... [more]
RL19_MOUSE1.379e-5463.7560S ribosomal protein L19 OS=Mus musculus GN=Rpl19... [more]
RL19_MACFA1.379e-5463.7560S ribosomal protein L19 OS=Macaca fascicularis G... [more]
RL19_HUMAN1.379e-5463.7560S ribosomal protein L19 OS=Homo sapiens GN=RPL19... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-593 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510078 ID=CF510078; Name=CF510078; organism=Citrus sinensis; type=EST; length=564bp
CCGCCTCCACTCTAAACAGCAAAAACCCTTGTTGGTTGGCCACTGATCGC
GAGAGACAGAGGGGGAGAGAAGAGAAGGGAAAATGGTGTCGTTGAAGTTA
CAGAAGCGGCTCTCCGCTAGCGTCCTCAAGTGCGGACGTGGCAAGGTCTG
GCTTGACCCTAATGAGGTCAACGAAATCTCCATGGCCAACTCCAGGCAGA
ACATTAGGAAATTGGTGAAGGATGGTTTCATCATCAGGAAGCCAACAAAG
ATCCACTCCCGTTCTCGCGCTCGCAGAATGAAGGAAGCCAAGAGGAAGGG
CCGTCACTCTGGATATGGTAAGAGAAAGGGTACTAGGGAGGCGAGGCTTC
CCACCAAAATCCTCTGGATGAGAAGGATGCGTGTGCTCAGGCGGTTGCTC
CGCAAATACCGTGAGTCGAAGAAAATTGACAAGCACATGTACCATGACAT
GTACATGAAGGTCAAGGGTAATGTATTTAAGAACAAGCGTGTCCTCATGG
AGAGTATCCACAAGTCAAAGGCTGAAAAGGCAAGAGAGAAGACTCTTTCT
GACCAGTTTGAGGC
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