CF510080

Overview
NameCF510080
Unique NameCF510080
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12709 contig Csv1_Contig12709:26..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510080 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 8.000e-25
Identity = 60/124 (48.39%), Postives = 79/124 (63.71%), Query Frame = 3
Query:  360 VSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVL---DGLPNGPV-NVTCNSWLHSK----HDNKQKRVFFTNKLYLPSQTPDGLKRYRAEE 707
            VS+ELD KTG +K+T++ YA  +  D    + YE++F+VPSGFG IGAI+V NE  +EM+L+DI L   DG  N  V  + CNSW+  K         KR+FF NK YLP QTP GL+ YR  +
Sbjct:  119 VSSELDAKTGKEKATVRSYAHNVDDDDHSVVTYEADFDVPSGFGPIGAIIVTNELRQEMFLEDINLTASDGAGNSTVLPIRCNSWVQPKSVGDEGTPSKRIFFANKTYLPGQTPAGLRSYRKND 242          
BLAST of CF510080 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.390e-23
Identity = 53/118 (44.92%), Postives = 77/118 (65.25%), Query Frame = 3
Query:  360 VSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDI--VLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEE 707
            VS+ELDPKTG ++  ++ +A     +G     YE++  VP+ FG +GA+LVENEHH+EM++KDI  +  G  +  +     SW+HSK D+ + R FFT K YLPSQTP G++  R +E
Sbjct:  106 VSSELDPKTGRERERVKGFAHMTLKEGT----YEAKMSVPASFGPVGAVLVENEHHREMFIKDIKLITGGDESTAITFDVASWVHSKFDDPEPRAFFTVKSYLPSQTPPGIEALRKKE 219          
BLAST of CF510080 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.668e-22
Identity = 58/124 (46.77%), Postives = 80/124 (64.52%), Query Frame = 3
Query:  360 VSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVL---DGLPNGPV-NVTCNSWLHSKHDNKQ----KRVFFTNKLYLPSQTPDGLKRYRAEE 707
            VS+EL+ KTG  K+T+  YA K+  D  G + YE++F+VP+GFG IGA++V NE  +EM+L+D+ L   DG  N  V  + CNSW+  K    +    KR+FF  K YLP QTP GL+ YR E+
Sbjct:  137 VSSELEAKTGKKKATVHSYAHKVDDDDHGVVTYEADFDVPTGFGPIGAVVVTNELGQEMFLEDLNLTAGDGAGNSTVLPIRCNSWVQPKSSIDEGTPGKRIFFA-KAYLPGQTPAGLRSYREED 259          
BLAST of CF510080 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.179e-22
Identity = 51/120 (42.50%), Postives = 78/120 (65.00%), Query Frame = 3
Query:  360 VSAELDPKTGLDKST----IQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEE 707
            +S +LDPKT L K +    ++D+++K     +  + Y +EF V + FG  GAI V N+H KE +L+ I ++G   GPV+  CNSW+ S+ D+  KR+FFTN+ YLP++TP GL+  R +E
Sbjct:  124 ISTQLDPKTKLPKKSNAAVLKDWSKKSKTKAE-RVHYTAEFTVDAAFGSPGAITVMNKHQKEFFLESITIEGFALGPVHFPCNSWVQSQKDHPDKRIFFTNQPYLPNETPSGLRVLREKE 242          
BLAST of CF510080 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.179e-22
Identity = 50/116 (43.10%), Postives = 79/116 (68.10%), Query Frame = 3
Query:  360 VSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEE 707
            +SA+ D +      T++DYA+++ A+     +YE EFE+P  FG +GAI ++N++H++++LK + L  LP G +  TC SW+  K  +  KR+FF++K YLPSQTP+ LK+YR EE
Sbjct:  111 ISAKTDQRI-----TVEDYAQRVWAEAPDE-KYECEFEMPEDFGPVGAIKIQNQYHRQLFLKGVELK-LPGGSITFTCESWVAPKSVDPTKRIFFSDKSYLPSQTPEPLKKYRKEE 219          
BLAST of CF510080 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.854e-22
Identity = 55/122 (45.08%), Postives = 81/122 (66.39%), Query Frame = 3
Query:  360 VSAELDPKTGLD----KSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDG--LPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEE 707
            +S ++ P+T       + +I+D+ +K GA GD ++ Y +EF V + FGE GAI V N H++E +L+ IV++G  LP GPV+  CNSW+ S  +   KRVFF+NK YLPS+TP GL+  R +E
Sbjct:  118 ISTKIHPRTKKPMQSGRVSIKDWCQKRGAKGD-HVVYTAEFTVDADFGEPGAIAVANRHNREFFLESIVVEGGGLPCGPVHFACNSWVQSTRELPTKRVFFSNKPYLPSETPPGLRELREKE 238          
BLAST of CF510080 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.339e-22
Identity = 50/120 (41.67%), Postives = 77/120 (64.17%), Query Frame = 3
Query:  360 VSAELDPKTGLDKST----IQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEE 707
            +S ++DPKT   K +    ++D+++K  +  +  + Y +EF V S FG  GAI V N+H KE +L+ I ++G   GPV+  CNSW+ S+ D+  KR+ FTN+ YLPS+TP GL+  R +E
Sbjct:  130 MSTQVDPKTNEPKKSKAAVLKDWSKKSNSKAE-RVHYTAEFTVDSAFGSPGAITVTNKHQKEFFLESITIEGFACGPVHFPCNSWVQSQKDHPSKRILFTNQPYLPSETPSGLRTLREKE 248          
BLAST of CF510080 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21
Identity = 50/120 (41.67%), Postives = 72/120 (60.00%), Query Frame = 3
Query:  360 VSAELDPKTGLDK----STIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEE 707
            VS E DP+ G  K    S +  +  K     +  + Y +EF V +GFGE GA+ V N H +E Y++ IV++G P GP + TCNSW+     ++ +RVFF+N+ YLPS+TP GL+  R  E
Sbjct:  106 VSTETDPRKGTPKKSKPSALVGWFDKKDVKAE-RVVYTAEFAVDAGFGEPGAVTVLNRHQREFYIESIVVEGFPTGPAHFTCNSWVQPTRVSRDRRVFFSNRPYLPSETPPGLRELRLRE 224          
BLAST of CF510080 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18
Identity = 51/118 (43.22%), Postives = 64/118 (54.24%), Query Frame = 3
Query:  360 VSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVL--DGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEE 707
            VS+ELDP+TG ++  I    +  G   D    YE+ F+VP+ FG IGA+ V N HH EM L DI +   G     V   C SW+   H    KRVFF    YLPSQTP G++  R  E
Sbjct:  120 VSSELDPQTGQEREPISGAVKHSGRVDDEWDMYEATFKVPASFGPIGAVQVTNYHHSEMLLGDIEVFPTGQEESAVTFHCKSWIDPSHCTPDKRVFFPAHSYLPSQTPKGVEGLRKRE 237          
BLAST of CF510080 vs. ExPASy Swiss-Prot
Match: LOX4_SOYBN (Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 3
Query:  438 GDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEE 707
            G G   Y+  FE  S FG  GA  ++N    E YLK ++L+ +PN G ++  CNSW+++  + K  R+FF N  YLPS+TP  L +YR EE
Sbjct:   89 GAGEQAYDVNFEWDSDFGIPGAFYIKNFMQNEFYLKSLILEDIPNHGTIHFVCNSWVYNSKNYKTDRIFFANNTYLPSETPAPLLKYREEE 179          
The following BLAST results are available for this feature:
BLAST of CF510080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
LOXC1_ORYSJ8.000e-2548.39Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOX23_HORVU4.390e-2344.92Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOXC2_ORYSJ1.668e-2246.77Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOX3_ARATH2.179e-2242.50Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX2_ARATH2.179e-2243.10Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOX6_ORYSJ4.854e-2245.08Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]
LOX4_ARATH6.339e-2241.67Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX5_ORYSJ7.008e-2141.67Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX21_HORVU1.119e-1843.22Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX4_SOYBN1.158e-1542.86Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-595 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510080 ID=CF510080; Name=CF510080; organism=Citrus sinensis; type=EST; length=708bp
AAATTCTAAAGCATCTTCTTCTTACTTGAAAAACAATGTTGAAGCCACAG
GTTCATCAACCTCAATCTATCAAACCCCTATTTCCATTATCCAAGCCGTT
TCTCCATGGAAATTACGGCCATGCCTTTCGTCCAGTTCAATCAACTTCTA
CACTTTTTAAAGGAAGTCCCAAACTTCGGATTGGTTCTGTTCCCAGAAAC
ACTATCAAAGCTATAGCAACTTCCACTGAAAAATCAATCAAAGTTAAGGC
TGTTGTTACTGTGAAACCAACTGTGGGAGGCTTCCTCTCAAATATTTCTT
TAGACCAAGGGTTAGATGATCTTGGAGATTTGTTTGGTAAATCACTCCTC
TTGGAGCTTGTCAGTGCTGAGCTTGACCCCAAGACGGGATTGGATAAATC
CACCATCCAAGATTATGCGCGCAAAATTGGTGCGGACGGGGATGGAAACA
TGCAATATGAATCAGAATTCGAAGTCCCATCTGGATTTGGAGAAATTGGC
GCAATATTAGTGGAAAATGAGCACCACAAAGAGATGTATTTGAAAGATAT
TGTTCTTGATGGTTTGCCAAATGGTCCTGTCAACGTAACATGTAATTCAT
GGCTTCACTCAAAGCACGACAATAAACAAAAGAGAGTTTTCTTTACCAAC
AAGTTGTACTTGCCATCACAAACACCAGACGGATTGAAGAGATATAGAGC
TGAGGAGC
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