CF510081

Overview
NameCF510081
Unique NameCF510081
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12534 contig Csv1_Contig12534:706..1201. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510081 vs. ExPASy Swiss-Prot
Match: SH3Y1_PONAB (SH3 domain-containing YSC84-like protein 1 OS=Pongo abelii GN=SH3YL1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.787e-12
Identity = 37/80 (46.25%), Postives = 54/80 (67.50%), Query Frame = 2
Query:  257 LNLPVGLSMEYEIYKASNTLRSYCQVAESN-PERSIPLAVLNGAKGLAILTVAKAGVLVSYKLGTGLVVARRSDGSWSAP 493
            +N P+  +++ E  KA+  LR + ++   N P++ IP  V+  AKGLAIL+V KAG LV+ + G+G+VVAR  DG WSAP
Sbjct:    1 MNNPIPSNLKSEAKKAAKILREFTEITSRNGPDKIIPAHVIAKAKGLAILSVIKAGFLVTARGGSGIVVARLPDGKWSAP 80          
BLAST of CF510081 vs. ExPASy Swiss-Prot
Match: SH3Y1_HUMAN (SH3 domain-containing YSC84-like protein 1 OS=Homo sapiens GN=SH3YL1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.787e-12
Identity = 37/80 (46.25%), Postives = 54/80 (67.50%), Query Frame = 2
Query:  257 LNLPVGLSMEYEIYKASNTLRSYCQVAESN-PERSIPLAVLNGAKGLAILTVAKAGVLVSYKLGTGLVVARRSDGSWSAP 493
            +N P+  +++ E  KA+  LR + ++   N P++ IP  V+  AKGLAIL+V KAG LV+ + G+G+VVAR  DG WSAP
Sbjct:    1 MNNPIPSNLKSEAKKAAKILREFTEITSRNGPDKIIPAHVIAKAKGLAILSVIKAGFLVTARGGSGIVVARLPDGKWSAP 80          
BLAST of CF510081 vs. ExPASy Swiss-Prot
Match: SH3Y1_BOVIN (SH3 domain-containing YSC84-like protein 1 OS=Bos taurus GN=SH3YL1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.208e-12
Identity = 36/80 (45.00%), Postives = 54/80 (67.50%), Query Frame = 2
Query:  257 LNLPVGLSMEYEIYKASNTLRSYCQVAESN-PERSIPLAVLNGAKGLAILTVAKAGVLVSYKLGTGLVVARRSDGSWSAP 493
            +N P+  +++ E  KA+  LR + ++   N P++ IP  V+  AKGLAIL+V KAG LV+ + G+G+V+AR  DG WSAP
Sbjct:    1 MNNPIPSNLKSEAKKAAKILREFTEITSRNGPDKIIPAHVIAKAKGLAILSVIKAGFLVTARGGSGIVLARLPDGKWSAP 80          
BLAST of CF510081 vs. ExPASy Swiss-Prot
Match: SH3Y1_RAT (SH3 domain-containing YSC84-like protein 1 OS=Rattus norvegicus GN=Sh3yl1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.108e-12
Identity = 35/80 (43.75%), Postives = 54/80 (67.50%), Query Frame = 2
Query:  257 LNLPVGLSMEYEIYKASNTLRSYCQVAESN-PERSIPLAVLNGAKGLAILTVAKAGVLVSYKLGTGLVVARRSDGSWSAP 493
            +N P+  +++ E  KA+  LR + ++   N P++ IP  V+  AKGLA+L+V KAG LV+ + G+G+V+AR  DG WSAP
Sbjct:    1 MNNPIPSNLKSEAKKAAKILREFTEITSRNGPDKIIPAHVIAKAKGLAVLSVIKAGFLVTARGGSGIVLARLPDGKWSAP 80          
BLAST of CF510081 vs. ExPASy Swiss-Prot
Match: SH3Y1_MOUSE (SH3 domain-containing YSC84-like protein 1 OS=Mus musculus GN=Sh3yl1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.108e-12
Identity = 35/80 (43.75%), Postives = 54/80 (67.50%), Query Frame = 2
Query:  257 LNLPVGLSMEYEIYKASNTLRSYCQVAESN-PERSIPLAVLNGAKGLAILTVAKAGVLVSYKLGTGLVVARRSDGSWSAP 493
            +N P+  +++ E  KA+  LR + ++   N P++ IP  V+  AKGLA+L+V KAG LV+ + G+G+V+AR  DG WSAP
Sbjct:    1 MNNPIPSNLKSEAKKAAKILREFTEITSRNGPDKIIPAHVIAKAKGLAVLSVIKAGFLVTARGGSGIVLARLPDGKWSAP 80          
BLAST of CF510081 vs. ExPASy Swiss-Prot
Match: YSC84_YEAST (Protein YSC84 OS=Saccharomyces cerevisiae GN=YSC84 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.024e-11
Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 2
Query:  257 LNLPVGLSMEYEIYKASNTLRSYCQVAES-NPERSIPLAVLNGAKGLAILTVAKAGVLVSYKLGTGLVVARRSDGSWSAP 493
            +N P+  S++ E  KA+  LRS+ +  +    ++ IP  VL  AKGLAI+TV KAG L S + G+G++VAR  DG+WSAP
Sbjct:    3 INNPIPRSLKSETKKAAKVLRSFVKPNQVFGADQVIPPYVLKRAKGLAIITVLKAGFLFSGRAGSGVIVARLKDGTWSAP 82          
The following BLAST results are available for this feature:
BLAST of CF510081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
SH3Y1_PONAB2.787e-1246.25SH3 domain-containing YSC84-like protein 1 OS=Pong... [more]
SH3Y1_HUMAN2.787e-1246.25SH3 domain-containing YSC84-like protein 1 OS=Homo... [more]
SH3Y1_BOVIN6.208e-1245.00SH3 domain-containing YSC84-like protein 1 OS=Bos ... [more]
SH3Y1_RAT8.108e-1243.75SH3 domain-containing YSC84-like protein 1 OS=Ratt... [more]
SH3Y1_MOUSE8.108e-1243.75SH3 domain-containing YSC84-like protein 1 OS=Mus ... [more]
YSC84_YEAST4.024e-1146.25Protein YSC84 OS=Saccharomyces cerevisiae GN=YSC84... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-596 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510081 ID=CF510081; Name=CF510081; organism=Citrus sinensis; type=EST; length=495bp
GCAGTGCACTGCTCCTTTTACTGCGCTTACTCGTGGTAGACATCACTGTC
GGTTTTGTGGAGGGGTTTTCTGTAGAATTTGTACTAAGGGAAGGTGTCTG
TTGCCTGTGAGGTTTAGAGAGCGGAATCCACAAAGGGTGTGTGATGCTTG
TTATGATAGACTTGATCCTTTACAAGGTGTTCTTATTAATACAATTAGCA
ATGCTGTGCAAGCGGCAAAACATGATGTGGTGGATTGGACATGTACAAGG
GGATGGCTGAACCTTCCAGTTGGTTTGTCAATGGAATATGAGATATATAA
GGCCTCTAATACATTGAGAAGCTACTGCCAGGTTGCGGAGTCAAATCCTG
AGAGATCAATACCCTTAGCGGTTCTGAACGGGGCCAAGGGTCTGGCAATT
CTAACAGTTGCTAAAGCTGGTGTACTAGTTTCTTACAAACTTGGCACTGG
TTTGGTTGTTGCTAGAAGGTCAGATGGTTCCTGGTCTGCTCCATC
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